Wall clock time and date at job start Tue Mar 31 2020 00:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35030 * 119.55509 * 2 1 4 4 C 1.40919 * 119.80681 * 180.27766 * 3 2 1 5 5 O 1.35441 * 120.51063 * 179.71275 * 4 3 2 6 6 C 1.42900 * 117.00267 * 185.18273 * 5 4 3 7 7 H 1.08998 * 110.88373 * 32.29400 * 6 5 4 8 8 C 1.55160 * 111.00789 * 156.17747 * 6 5 4 9 9 C 1.54325 * 102.94494 * 153.61682 * 8 6 5 10 10 N 1.47023 * 107.26884 * 337.80606 * 9 8 6 11 11 C 1.36939 * 125.64837 * 178.89438 * 10 9 8 12 12 H 1.07997 * 120.00022 * 180.02562 * 11 10 9 13 13 C 1.38816 * 119.99583 * 0.02562 * 11 10 9 14 14 N 1.31612 * 120.00015 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99510 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46742 * 90.00255 * 15 13 11 17 17 H 1.48500 * 109.47030 * 209.99873 * 15 13 11 18 18 H 1.48500 * 109.47354 * 330.00366 * 15 13 11 19 19 C 1.47428 * 108.70461 * 358.94199 * 10 9 8 20 20 C 1.38260 * 118.97493 * 359.45050 * 4 3 2 21 21 C 1.39966 * 119.12250 * 0.26956 * 20 4 3 22 22 O 1.22131 * 119.92545 * 179.97438 * 21 20 4 23 23 N 1.34594 * 120.14710 * 0.02562 * 21 20 4 24 24 C 1.46497 * 119.46695 * 179.97438 * 23 21 20 25 25 H 1.09006 * 109.47029 * 270.28071 * 1 2 3 26 26 H 1.08993 * 109.47699 * 30.28158 * 1 2 3 27 27 H 1.09005 * 109.46739 * 150.28567 * 1 2 3 28 28 H 1.08005 * 120.09309 * 0.02562 * 3 2 1 29 29 H 1.09007 * 110.71596 * 271.97887 * 8 6 5 30 30 H 1.08997 * 110.72150 * 35.24751 * 8 6 5 31 31 H 1.09000 * 109.87843 * 97.22209 * 9 8 6 32 32 H 1.08990 * 109.88169 * 218.23547 * 9 8 6 33 33 H 0.97006 * 120.00023 * 179.97438 * 14 13 11 34 34 H 1.08996 * 110.36872 * 265.28980 * 19 10 9 35 35 H 1.09001 * 110.36896 * 142.96644 * 19 10 9 36 36 H 1.08005 * 120.43260 * 180.24799 * 20 4 3 37 37 H 1.08994 * 109.47549 * 359.97438 * 24 23 21 38 38 H 1.09005 * 109.47402 * 119.99693 * 24 23 21 39 39 H 1.09006 * 109.46978 * 239.99711 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1746 0.0000 4 6 3.5822 1.1808 -0.0059 5 8 4.2647 2.3507 -0.0119 6 6 5.6864 2.2718 -0.1326 7 1 5.9778 1.4150 -0.7400 8 6 6.2693 3.5881 -0.7116 9 6 7.7068 3.6058 -0.1504 10 7 7.7204 2.7463 1.0423 11 6 8.8148 2.4784 1.8205 12 1 8.7210 1.8307 2.6797 13 6 10.0448 3.0393 1.5051 14 7 10.1591 3.8282 0.4578 15 14 11.5375 2.6744 2.5672 16 1 12.2327 1.4698 2.0467 17 1 12.4644 3.8341 2.5335 18 1 11.1021 2.4292 3.9656 19 6 6.3609 2.2196 1.2610 20 6 4.2573 -0.0258 -0.0001 21 6 3.5229 -1.2172 0.0058 22 8 4.1043 -2.2913 0.0106 23 7 2.1774 -1.1820 0.0052 24 6 1.4236 -2.4381 0.0109 25 1 -0.3633 0.0050 1.0277 26 1 -0.3634 0.8874 -0.5181 27 1 -0.3633 -0.8926 -0.5094 28 1 1.6273 2.1066 0.0004 29 1 6.2810 3.5582 -1.8012 30 1 5.7052 4.4496 -0.3545 31 1 8.4005 3.2167 -0.8958 32 1 7.9865 4.6239 0.1203 33 1 11.0186 4.2204 0.2376 34 1 5.8197 2.8482 1.9681 35 1 6.4056 1.1923 1.6225 36 1 5.3372 -0.0485 -0.0004 37 1 2.1177 -3.2784 0.0146 38 1 0.7958 -2.4811 0.9009 39 1 0.7963 -2.4893 -0.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225532454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:37 Heat of formation + Delta-G solvation = -31.983805 kcal Electronic energy + Delta-G solvation = -21663.467400 eV Core-core repulsion = 18379.036225 eV Total energy + Delta-G solvation = -3284.431174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.54865 -40.72701 -38.50847 -38.00436 -34.81458 -34.04598 -32.59530 -31.24979 -29.54416 -28.33423 -28.01342 -26.50761 -23.86995 -23.47200 -22.10998 -21.84245 -19.23587 -19.13494 -18.36275 -18.03047 -17.28386 -16.90450 -16.70834 -16.30668 -15.72188 -15.58983 -14.88570 -14.77798 -14.53633 -14.22741 -14.13358 -13.98283 -13.79488 -13.56409 -13.51408 -12.97331 -12.97201 -12.76739 -12.47135 -12.27379 -12.17038 -12.06636 -11.89004 -11.69944 -11.55855 -11.21233 -10.77075 -10.12319 -9.03628 -9.00665 -7.91804 -5.29401 -0.17199 0.81609 1.43696 1.46266 1.54756 1.66886 1.84533 2.46037 2.54539 3.27128 3.47765 3.53903 3.59209 3.74176 3.84530 3.93616 3.99884 4.12962 4.22646 4.42146 4.46911 4.52144 4.59630 4.73891 4.74922 4.80466 4.83683 4.90095 4.93810 5.04663 5.13503 5.20552 5.36860 5.51982 5.54807 5.66087 6.05486 6.07851 6.16686 6.96949 7.02477 7.66074 8.29365 9.18517 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.003936 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.126437 B = 7112.574423 C = 7748.836633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.207 3.793 3 C -0.252 4.252 4 C 0.238 3.762 5 O -0.288 6.288 6 C 0.080 3.920 7 H 0.083 0.917 8 C -0.119 4.119 9 C 0.184 3.816 10 N -0.624 5.624 11 C -0.253 4.253 12 H 0.079 0.921 13 C -0.059 4.059 14 N -0.947 5.947 15 Si 0.982 3.018 16 H -0.286 1.286 17 H -0.288 1.288 18 H -0.270 1.270 19 C 0.120 3.880 20 C -0.406 4.406 21 C 0.523 3.477 22 O -0.613 6.613 23 N -0.504 5.504 24 C 0.046 3.954 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.186 0.814 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.251 0.749 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.077 -5.452 -3.118 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 C -0.275 4.275 4 C 0.186 3.814 5 O -0.197 6.197 6 C 0.023 3.977 7 H 0.101 0.899 8 C -0.157 4.157 9 C 0.060 3.940 10 N -0.352 5.352 11 C -0.381 4.381 12 H 0.097 0.903 13 C -0.253 4.253 14 N -0.595 5.595 15 Si 0.809 3.191 16 H -0.213 1.213 17 H -0.214 1.214 18 H -0.195 1.195 19 C -0.006 4.006 20 C -0.428 4.428 21 C 0.330 3.670 22 O -0.502 6.502 23 N -0.215 5.215 24 C -0.094 4.094 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.203 0.797 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.587 -5.878 -3.091 26.434 hybrid contribution 2.024 -0.254 0.511 2.103 sum -23.563 -6.132 -2.580 24.484 Atomic orbital electron populations 1.21366 0.82961 1.07146 1.06308 1.21110 0.97404 0.83102 0.88670 1.20227 0.88998 1.00036 1.18221 1.20029 0.92893 0.84098 0.84374 1.85961 1.20595 1.28300 1.84833 1.23622 0.76309 1.00395 0.97380 0.89923 1.22889 0.95658 0.95709 1.01399 1.20985 0.91613 0.93837 0.87610 1.44604 1.04371 1.55428 1.30764 1.19430 0.87184 1.24864 1.06651 0.90300 1.25668 1.00391 0.99520 0.99678 1.70141 1.24192 1.36237 1.28978 0.85039 0.78752 0.76906 0.78366 1.21259 1.21400 1.19464 1.21963 0.86323 0.97109 0.95188 1.22053 1.00984 0.91930 1.27867 1.16513 0.81780 0.89941 0.78788 1.90893 1.69198 1.32681 1.57407 1.45473 1.07208 1.09286 1.59581 1.22459 0.97068 0.83942 1.05954 0.86839 0.86519 0.88036 0.79713 0.88493 0.89265 0.96088 0.95957 0.94003 0.94809 0.94467 0.85877 0.90596 0.87217 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 9.46 71.24 0.67 0.37 16 2 C 0.21 3.07 6.65 41.19 0.27 3.35 16 3 C -0.25 -4.83 9.57 22.19 0.21 -4.62 16 4 C 0.24 7.01 6.74 22.93 0.15 7.17 16 5 O -0.29 -9.28 9.95 -87.38 -0.87 -10.15 16 6 C 0.08 3.02 2.81 31.99 0.09 3.11 16 7 H 0.08 3.24 6.25 -2.39 -0.01 3.23 16 8 C -0.12 -4.44 6.69 31.78 0.21 -4.22 16 9 C 0.18 9.29 5.37 86.73 0.47 9.75 16 10 N -0.62 -33.86 3.39 -691.99 -2.35 -36.21 16 11 C -0.25 -14.87 10.28 84.03 0.86 -14.01 16 12 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 13 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 14 N -0.95 -57.60 10.31 21.65 0.22 -57.37 16 15 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.12 5.41 6.88 86.86 0.60 6.01 16 20 C -0.41 -14.38 8.93 22.69 0.20 -14.18 16 21 C 0.52 17.86 7.39 84.69 0.63 18.49 16 22 O -0.61 -25.90 16.36 -5.74 -0.09 -25.99 16 23 N -0.50 -10.92 2.99 -660.53 -1.97 -12.89 16 24 C 0.05 0.61 9.33 127.77 1.19 1.80 16 25 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 26 H 0.12 -0.09 8.07 -2.39 -0.02 -0.11 16 27 H 0.10 -0.07 6.45 -2.38 -0.02 -0.09 16 28 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 32 H 0.02 1.23 7.51 -2.39 -0.02 1.21 16 33 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 34 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.72 7.84 -2.39 -0.02 1.70 16 36 H 0.12 5.06 5.77 -2.91 -0.02 5.04 16 37 H 0.08 1.49 6.84 -2.39 -0.02 1.48 16 38 H 0.11 0.74 8.06 -2.38 -0.02 0.72 16 39 H 0.11 0.70 7.34 -2.38 -0.02 0.68 16 Total: -1.00 -81.64 317.72 4.05 -77.59 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.05 Total: 5.95 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.03 Total: 10.03 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.10 Total: -106.47 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.96 Total: -36.15 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -81.64 4.05 -77.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225532454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.608 kcal (2) G-P(sol) polarization free energy of solvation -81.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds