Wall clock time and date at job start Tue Mar 31 2020 00:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35027 * 119.56286 * 2 1 4 4 C 1.40914 * 119.81486 * 179.97438 * 3 2 1 5 5 O 1.35445 * 120.51451 * 179.97438 * 4 3 2 6 6 C 1.42898 * 117.00000 * 174.47476 * 5 4 3 7 7 C 1.53515 * 114.16773 * 201.93778 * 6 5 4 8 8 N 1.47483 * 87.93025 * 220.32956 * 7 6 5 9 9 C 1.46900 * 110.99825 * 138.70605 * 8 7 6 10 10 C 1.50696 * 109.47211 * 170.00155 * 9 8 7 11 11 H 1.08005 * 120.00292 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99931 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46895 * 269.99807 * 14 12 10 16 16 H 1.48495 * 109.47495 * 29.99611 * 14 12 10 17 17 H 1.48498 * 109.47470 * 149.99892 * 14 12 10 18 18 C 1.47474 * 87.83793 * 27.01265 * 8 7 6 19 19 C 1.38264 * 118.97299 * 0.27592 * 4 3 2 20 20 C 1.39973 * 119.12200 * 359.43973 * 19 4 3 21 21 O 1.22123 * 119.92616 * 180.31746 * 20 19 4 22 22 N 1.34592 * 120.14456 * 0.56476 * 20 19 4 23 23 C 1.46500 * 119.46856 * 179.74936 * 22 20 19 24 24 H 1.09000 * 109.47175 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47109 * 120.00067 * 1 2 3 26 26 H 1.09006 * 109.47043 * 240.00186 * 1 2 3 27 27 H 1.08005 * 120.09002 * 0.02562 * 3 2 1 28 28 H 1.09002 * 113.38486 * 335.01887 * 6 5 4 29 29 H 1.08998 * 113.47573 * 105.56939 * 7 6 5 30 30 H 1.09001 * 113.48084 * 335.09614 * 7 6 5 31 31 H 1.08999 * 109.47134 * 49.99770 * 9 8 7 32 32 H 1.08998 * 109.47358 * 289.99903 * 9 8 7 33 33 H 0.97006 * 120.00235 * 180.02562 * 13 12 10 34 34 H 1.09002 * 113.47889 * 87.75006 * 18 8 7 35 35 H 1.08993 * 113.47996 * 218.22378 * 18 8 7 36 36 H 1.07994 * 120.43511 * 179.70294 * 19 4 3 37 37 H 1.08993 * 109.47066 * 269.98039 * 23 22 20 38 38 H 1.09004 * 109.46904 * 29.98401 * 23 22 20 39 39 H 1.09003 * 109.47104 * 149.97771 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1745 0.0000 4 6 3.5823 1.1807 0.0005 5 8 4.2649 2.3506 0.0000 6 6 5.6864 2.2723 0.1232 7 6 6.3442 3.5593 0.6406 8 7 7.4253 3.3363 -0.3375 9 6 7.8229 4.5966 -0.9790 10 6 9.0798 4.3775 -1.7809 11 1 9.5379 3.3998 -1.8106 12 6 9.6452 5.4250 -2.4766 13 7 10.7424 5.2339 -3.1759 14 14 8.8535 7.1161 -2.4246 15 1 7.8711 7.2369 -3.5316 16 1 8.1591 7.2979 -1.1246 17 1 9.9008 8.1579 -2.5763 18 6 6.4485 2.6063 -1.1669 19 6 4.2573 -0.0259 -0.0047 20 6 3.5228 -1.2175 0.0015 21 8 4.1041 -2.2915 0.0028 22 7 2.1774 -1.1821 0.0010 23 6 1.4234 -2.4382 0.0019 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3633 -0.5138 0.8901 27 1 1.6275 2.1065 0.0004 28 1 6.0282 1.3650 0.6213 29 1 6.6755 3.4913 1.6768 30 1 5.7578 4.4566 0.4428 31 1 8.0066 5.3514 -0.2144 32 1 7.0250 4.9356 -1.6398 33 1 11.1405 5.9710 -3.6651 34 1 5.8898 3.2493 -1.8471 35 1 6.8679 1.7308 -1.6624 36 1 5.3370 -0.0487 -0.0093 37 1 1.2365 -2.7505 -1.0254 38 1 1.9995 -3.2073 0.5165 39 1 0.4733 -2.2913 0.5157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225534733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:32 Heat of formation + Delta-G solvation = 8.826083 kcal Electronic energy + Delta-G solvation = -21164.220522 eV Core-core repulsion = 17881.558997 eV Total energy + Delta-G solvation = -3282.661525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63906 -40.17135 -38.00649 -37.12989 -33.66023 -32.78158 -31.89976 -29.96124 -27.83659 -27.53945 -25.70383 -25.46871 -22.99522 -22.60049 -21.08596 -19.83805 -18.14248 -17.61834 -17.23960 -16.80590 -16.46867 -15.71801 -15.43569 -15.12229 -14.63489 -14.09105 -13.90003 -13.87955 -13.61585 -13.47703 -13.24576 -13.06185 -12.84848 -12.60371 -12.37212 -12.29042 -11.94926 -11.46260 -11.35173 -11.07424 -10.72605 -10.36865 -10.10102 -10.07608 -9.82863 -9.40893 -9.10780 -8.61935 -8.19963 -8.09033 -6.08165 -4.06480 0.67881 1.75021 2.44082 2.93240 3.24822 3.32869 3.33367 3.51511 4.02328 4.37985 4.41397 4.48656 4.60273 4.64844 4.78793 4.82941 4.97615 4.98460 5.08283 5.18335 5.21884 5.23243 5.30494 5.35778 5.63128 5.74711 5.82145 5.90362 5.99125 6.10222 6.14706 6.26469 6.32245 6.62819 6.94232 7.20201 7.22698 7.58240 7.71909 7.99513 8.57283 9.02151 9.52002 11.05085 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.003332 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.648488 B = 8402.592807 C = 8823.844868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.182 3.818 3 C -0.235 4.235 4 C 0.233 3.767 5 O -0.291 6.291 6 C 0.039 3.961 7 C 0.001 3.999 8 N -0.447 5.447 9 C 0.131 3.869 10 C -0.509 4.509 11 H 0.081 0.919 12 C 0.068 3.932 13 N -0.898 5.898 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.267 1.267 17 H -0.284 1.284 18 C -0.003 4.003 19 C -0.365 4.365 20 C 0.534 3.466 21 O -0.559 6.559 22 N -0.508 5.508 23 C 0.057 3.943 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.031 0.969 32 H -0.001 1.001 33 H 0.264 0.736 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.155 0.845 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.339 -9.308 7.926 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 C -0.259 4.259 4 C 0.181 3.819 5 O -0.200 6.200 6 C -0.017 4.017 7 C -0.128 4.128 8 N -0.171 5.171 9 C 0.004 3.996 10 C -0.548 4.548 11 H 0.099 0.901 12 C -0.134 4.134 13 N -0.537 5.537 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.192 1.192 17 H -0.210 1.210 18 C -0.132 4.132 19 C -0.387 4.387 20 C 0.339 3.661 21 O -0.443 6.443 22 N -0.222 5.222 23 C -0.084 4.084 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.173 0.827 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.218 -9.987 7.979 27.384 hybrid contribution -0.766 1.461 -0.446 1.709 sum -24.984 -8.525 7.533 27.452 Atomic orbital electron populations 1.21087 0.87735 1.05428 1.03732 1.20222 0.94907 0.84826 0.92744 1.19867 0.91128 0.97798 1.17132 1.19609 0.91360 0.85422 0.85507 1.86057 1.21718 1.27793 1.84430 1.24706 0.75522 1.01176 1.00268 1.24116 0.92942 0.95494 1.00237 1.69003 1.21082 1.19164 1.07866 1.20754 0.97163 0.87376 0.94346 1.20936 1.07496 0.98714 1.27628 0.90051 1.24917 0.94819 0.98644 0.94971 1.69892 1.19913 1.32282 1.31587 0.86862 0.79394 0.84646 0.78873 1.20219 1.19214 1.20985 1.24316 0.92955 1.00795 0.95181 1.22230 1.01928 0.90364 1.24179 1.16511 0.79912 0.90930 0.78737 1.90955 1.67699 1.31363 1.54240 1.45428 1.08419 1.06915 1.61407 1.22120 0.96822 0.85743 1.03763 0.88829 0.89589 0.89627 0.82926 0.86538 0.89144 0.90826 0.95104 0.98302 0.92562 0.90542 0.89281 0.82717 0.90750 0.88812 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 8.71 36.00 0.31 -0.10 16 2 C 0.18 1.47 6.65 -81.93 -0.54 0.92 16 3 C -0.24 -2.29 9.57 -39.71 -0.38 -2.67 16 4 C 0.23 3.03 6.74 -38.56 -0.26 2.77 16 5 O -0.29 -4.15 10.19 -18.03 -0.18 -4.33 16 6 C 0.04 0.60 4.03 -26.20 -0.11 0.49 16 7 C 0.00 0.02 7.52 -7.54 -0.06 -0.04 16 8 N -0.45 -9.36 6.32 -246.11 -1.55 -10.92 16 9 C 0.13 3.16 3.64 -4.98 -0.02 3.14 16 10 C -0.51 -14.74 9.94 -34.44 -0.34 -15.08 16 11 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 14 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.00 -0.06 7.55 -7.54 -0.06 -0.12 16 19 C -0.36 -5.29 9.00 -38.92 -0.35 -5.64 16 20 C 0.53 7.88 7.39 -15.69 -0.12 7.77 16 21 O -0.56 -10.12 16.62 4.81 0.08 -10.04 16 22 N -0.51 -5.27 2.99 -122.79 -0.37 -5.64 16 23 C 0.06 0.39 9.89 59.85 0.59 0.99 16 24 H 0.09 0.20 7.81 -51.93 -0.41 -0.21 16 25 H 0.09 0.20 8.09 -51.93 -0.42 -0.22 16 26 H 0.09 0.17 7.36 -51.93 -0.38 -0.21 16 27 H 0.15 1.14 7.88 -52.48 -0.41 0.72 16 28 H 0.12 1.68 6.01 -51.93 -0.31 1.37 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 31 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 32 H 0.00 -0.02 6.73 -51.93 -0.35 -0.37 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.16 2.35 5.98 -52.49 -0.31 2.03 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.78 7.37 -51.93 -0.38 0.40 16 39 H 0.08 0.28 6.36 -51.93 -0.33 -0.05 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -35.53 321.24 -7.84 -43.37 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.33 Total: -1.34 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.42 Total: -5.66 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -1.15 Total: -43.56 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.10 Total: -14.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.53 -7.84 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225534733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.191 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds