Wall clock time and date at job start Tue Mar 31 2020 00:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35027 * 119.56286 * 2 1 4 4 C 1.40914 * 119.81486 * 179.97438 * 3 2 1 5 5 O 1.35445 * 120.51451 * 179.97438 * 4 3 2 6 6 C 1.42898 * 117.00000 * 174.47476 * 5 4 3 7 7 C 1.53515 * 114.16773 * 201.93778 * 6 5 4 8 8 N 1.47483 * 87.93025 * 220.32956 * 7 6 5 9 9 C 1.46900 * 110.99825 * 138.70605 * 8 7 6 10 10 C 1.50696 * 109.47211 * 170.00155 * 9 8 7 11 11 H 1.08005 * 120.00292 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00126 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99931 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46895 * 269.99807 * 14 12 10 16 16 H 1.48495 * 109.47495 * 29.99611 * 14 12 10 17 17 H 1.48498 * 109.47470 * 149.99892 * 14 12 10 18 18 C 1.47474 * 87.83793 * 27.01265 * 8 7 6 19 19 C 1.38264 * 118.97299 * 0.27592 * 4 3 2 20 20 C 1.39973 * 119.12200 * 359.43973 * 19 4 3 21 21 O 1.22123 * 119.92616 * 180.31746 * 20 19 4 22 22 N 1.34592 * 120.14456 * 0.56476 * 20 19 4 23 23 C 1.46500 * 119.46856 * 179.74936 * 22 20 19 24 24 H 1.09000 * 109.47175 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47109 * 120.00067 * 1 2 3 26 26 H 1.09006 * 109.47043 * 240.00186 * 1 2 3 27 27 H 1.08005 * 120.09002 * 0.02562 * 3 2 1 28 28 H 1.09002 * 113.38486 * 335.01887 * 6 5 4 29 29 H 1.08998 * 113.47573 * 105.56939 * 7 6 5 30 30 H 1.09001 * 113.48084 * 335.09614 * 7 6 5 31 31 H 1.08999 * 109.47134 * 49.99770 * 9 8 7 32 32 H 1.08998 * 109.47358 * 289.99903 * 9 8 7 33 33 H 0.97006 * 120.00235 * 180.02562 * 13 12 10 34 34 H 1.09002 * 113.47889 * 87.75006 * 18 8 7 35 35 H 1.08993 * 113.47996 * 218.22378 * 18 8 7 36 36 H 1.07994 * 120.43511 * 179.70294 * 19 4 3 37 37 H 1.08993 * 109.47066 * 269.98039 * 23 22 20 38 38 H 1.09004 * 109.46904 * 29.98401 * 23 22 20 39 39 H 1.09003 * 109.47104 * 149.97771 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1745 0.0000 4 6 3.5823 1.1807 0.0005 5 8 4.2649 2.3506 0.0000 6 6 5.6864 2.2723 0.1232 7 6 6.3442 3.5593 0.6406 8 7 7.4253 3.3363 -0.3375 9 6 7.8229 4.5966 -0.9790 10 6 9.0798 4.3775 -1.7809 11 1 9.5379 3.3998 -1.8106 12 6 9.6452 5.4250 -2.4766 13 7 10.7424 5.2339 -3.1759 14 14 8.8535 7.1161 -2.4246 15 1 7.8711 7.2369 -3.5316 16 1 8.1591 7.2979 -1.1246 17 1 9.9008 8.1579 -2.5763 18 6 6.4485 2.6063 -1.1669 19 6 4.2573 -0.0259 -0.0047 20 6 3.5228 -1.2175 0.0015 21 8 4.1041 -2.2915 0.0028 22 7 2.1774 -1.1821 0.0010 23 6 1.4234 -2.4382 0.0019 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3633 -0.5138 0.8901 27 1 1.6275 2.1065 0.0004 28 1 6.0282 1.3650 0.6213 29 1 6.6755 3.4913 1.6768 30 1 5.7578 4.4566 0.4428 31 1 8.0066 5.3514 -0.2144 32 1 7.0250 4.9356 -1.6398 33 1 11.1405 5.9710 -3.6651 34 1 5.8898 3.2493 -1.8471 35 1 6.8679 1.7308 -1.6624 36 1 5.3370 -0.0487 -0.0093 37 1 1.2365 -2.7505 -1.0254 38 1 1.9995 -3.2073 0.5165 39 1 0.4733 -2.2913 0.5157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225534733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:31 Heat of formation + Delta-G solvation = -19.040639 kcal Electronic energy + Delta-G solvation = -21165.428914 eV Core-core repulsion = 17881.558997 eV Total energy + Delta-G solvation = -3283.869917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.58617 -41.47790 -39.27568 -38.14097 -35.06149 -34.43771 -32.62306 -31.78920 -28.66483 -28.34417 -27.22647 -26.94299 -23.99214 -23.81392 -22.54038 -21.22048 -19.28410 -18.99843 -18.52127 -18.08576 -17.35005 -16.91957 -16.76441 -16.45430 -16.23630 -15.59009 -14.94022 -14.82932 -14.72353 -14.53438 -14.22254 -14.10905 -13.89343 -13.74890 -13.54115 -13.45983 -13.02685 -12.88147 -12.57524 -12.35284 -12.15676 -11.81637 -11.73196 -11.62364 -11.45139 -11.22342 -10.83000 -10.13322 -9.83837 -9.04990 -8.32370 -6.38070 -0.19086 0.80666 1.33030 1.35810 1.46571 1.65793 1.81307 2.31778 2.52693 2.99173 3.12281 3.22420 3.47474 3.63984 3.80217 3.89106 4.04554 4.13142 4.29635 4.31699 4.40372 4.45725 4.49925 4.54078 4.66875 4.73823 4.75596 4.77154 4.77695 4.85554 5.02457 5.12737 5.16388 5.38387 5.49054 5.60077 5.85720 6.04725 6.10226 6.45815 6.68223 6.96166 7.25313 8.84950 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.003332 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.648488 B = 8402.592807 C = 8823.844868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.205 3.795 3 C -0.253 4.253 4 C 0.237 3.763 5 O -0.289 6.289 6 C 0.063 3.937 7 C 0.008 3.992 8 N -0.479 5.479 9 C 0.141 3.859 10 C -0.525 4.525 11 H 0.029 0.971 12 C 0.005 3.995 13 N -0.949 5.949 14 Si 0.954 3.046 15 H -0.264 1.264 16 H -0.244 1.244 17 H -0.280 1.280 18 C -0.010 4.010 19 C -0.402 4.402 20 C 0.522 3.478 21 O -0.611 6.611 22 N -0.505 5.505 23 C 0.049 3.951 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.183 0.817 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.009 0.991 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.106 -7.670 9.009 32.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.095 3.905 3 C -0.276 4.276 4 C 0.186 3.814 5 O -0.198 6.198 6 C 0.006 3.994 7 C -0.121 4.121 8 N -0.203 5.203 9 C 0.014 3.986 10 C -0.563 4.563 11 H 0.047 0.953 12 C -0.193 4.193 13 N -0.590 5.590 14 Si 0.776 3.224 15 H -0.189 1.189 16 H -0.167 1.167 17 H -0.205 1.205 18 C -0.139 4.139 19 C -0.424 4.424 20 C 0.328 3.672 21 O -0.500 6.500 22 N -0.216 5.216 23 C -0.091 4.091 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.200 0.800 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.040 -8.357 9.079 31.553 hybrid contribution 0.624 0.812 -0.797 1.298 sum -28.416 -7.545 8.282 30.545 Atomic orbital electron populations 1.21350 0.83217 1.07616 1.05646 1.21095 0.97350 0.83226 0.88814 1.20265 0.89366 0.99848 1.18094 1.19968 0.92739 0.84193 0.84547 1.86034 1.20726 1.28420 1.84636 1.24296 0.76310 1.00990 0.97764 1.24158 0.91494 0.96340 1.00104 1.68865 1.23902 1.18085 1.09466 1.20519 0.95029 0.89073 0.94015 1.21202 1.09479 0.96777 1.28839 0.95268 1.25973 0.95276 1.03841 0.94163 1.70067 1.21935 1.34089 1.32872 0.85616 0.78598 0.77921 0.80242 1.18915 1.16697 1.20521 1.24346 0.93046 1.00075 0.96476 1.22088 1.01345 0.91532 1.27468 1.16575 0.81611 0.90120 0.78888 1.90909 1.69199 1.32738 1.57125 1.45503 1.07367 1.09178 1.59558 1.22442 0.97801 0.83775 1.05041 0.86729 0.87621 0.87199 0.79982 0.86150 0.87133 0.89505 0.94452 0.97365 0.92256 0.90519 0.90716 0.84842 0.89513 0.90818 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.09 8.71 71.23 0.62 0.53 16 2 C 0.20 2.55 6.65 41.19 0.27 2.83 16 3 C -0.25 -4.13 9.57 22.19 0.21 -3.92 16 4 C 0.24 5.96 6.74 22.93 0.15 6.11 16 5 O -0.29 -7.85 10.19 -87.42 -0.89 -8.74 16 6 C 0.06 1.91 4.03 30.94 0.12 2.03 16 7 C 0.01 0.24 7.52 83.58 0.63 0.87 16 8 N -0.48 -20.28 6.32 -932.93 -5.89 -26.18 16 9 C 0.14 6.80 3.64 85.56 0.31 7.11 16 10 C -0.52 -31.46 9.94 25.60 0.25 -31.20 16 11 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 12 C 0.00 0.28 5.47 84.65 0.46 0.74 16 13 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 14 Si 0.95 43.82 27.47 68.60 1.88 45.71 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 C -0.01 -0.38 7.55 83.58 0.63 0.25 16 19 C -0.40 -12.15 9.00 22.70 0.20 -11.95 16 20 C 0.52 15.84 7.39 84.69 0.63 16.47 16 21 O -0.61 -23.55 16.62 -5.72 -0.09 -23.64 16 22 N -0.50 -9.58 2.99 -660.54 -1.97 -11.55 16 23 C 0.05 0.56 9.89 127.77 1.26 1.82 16 24 H 0.11 -0.26 7.81 -2.39 -0.02 -0.27 16 25 H 0.11 -0.18 8.09 -2.39 -0.02 -0.19 16 26 H 0.11 -0.30 7.36 -2.38 -0.02 -0.32 16 27 H 0.18 1.87 7.88 -2.91 -0.02 1.85 16 28 H 0.12 3.60 6.01 -2.39 -0.01 3.58 16 29 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.09 2.54 7.91 -2.39 -0.02 2.52 16 31 H 0.04 1.74 7.14 -2.39 -0.02 1.73 16 32 H 0.01 0.40 6.73 -2.39 -0.02 0.38 16 33 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 34 H 0.08 2.84 7.42 -2.39 -0.02 2.82 16 35 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.13 4.45 5.98 -2.91 -0.02 4.44 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.19 7.37 -2.38 -0.02 1.17 16 39 H 0.13 0.24 6.36 -2.39 -0.02 0.22 16 Total: -1.00 -83.80 321.24 0.10 -83.70 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.00 Total: 9.42 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.77 Total: -8.31 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -7.57 Total: -98.14 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.99 Total: -32.38 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -83.80 0.10 -83.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225534733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.659 kcal (2) G-P(sol) polarization free energy of solvation -83.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds