Wall clock time and date at job start Tue Mar 31 2020 01:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35435 * 119.69939 * 2 1 4 4 O 1.36099 * 120.40843 * 359.97438 * 3 2 1 5 5 C 1.42902 * 117.00162 * 269.71939 * 4 3 2 6 6 C 1.53507 * 114.17020 * 210.00743 * 5 4 3 7 7 N 1.47489 * 87.92897 * 220.32989 * 6 5 4 8 8 C 1.46904 * 110.99948 * 138.70309 * 7 6 5 9 9 C 1.50696 * 109.46794 * 169.99650 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.47481 * 87.83412 * 27.01215 * 7 6 5 18 18 C 1.41793 * 119.17153 * 179.72397 * 3 2 1 19 19 O 1.22288 * 120.67671 * 180.23100 * 18 3 2 20 20 C 1.41277 * 118.64045 * 0.24518 * 18 3 2 21 21 C 1.35191 * 119.32528 * 0.02562 * 20 18 3 22 22 N 1.35459 * 120.79159 * 359.97438 * 21 20 18 23 23 C 1.46497 * 119.26693 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.46704 * 90.00350 * 1 2 3 25 25 H 1.08995 * 109.47460 * 210.00013 * 1 2 3 26 26 H 1.09002 * 109.47316 * 330.00642 * 1 2 3 27 27 H 1.09001 * 113.25573 * 342.95789 * 5 4 3 28 28 H 1.08997 * 113.47543 * 105.56799 * 6 5 4 29 29 H 1.08999 * 113.53382 * 335.09910 * 6 5 4 30 30 H 1.09005 * 109.47078 * 49.99935 * 8 7 6 31 31 H 1.09002 * 109.47005 * 290.00151 * 8 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 33 33 H 1.08990 * 113.47671 * 87.75950 * 17 7 6 34 34 H 1.09001 * 113.47203 * 218.22506 * 17 7 6 35 35 H 1.08002 * 120.33978 * 180.02562 * 20 18 3 36 36 H 1.08006 * 119.60307 * 179.97438 * 21 20 18 37 37 H 1.08997 * 109.47224 * 89.99650 * 23 22 21 38 38 H 1.08999 * 109.47009 * 209.99855 * 23 22 21 39 39 H 1.08998 * 109.47093 * 329.99809 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1780 1.1764 0.0000 4 8 1.4997 2.3564 -0.0005 5 6 1.1823 2.9217 -1.2740 6 6 1.1088 4.4550 -1.2803 7 7 -0.0671 4.3416 -2.1634 8 6 -1.1078 5.3052 -1.7806 9 6 -2.1795 5.3342 -2.8396 10 1 -2.0961 4.7000 -3.7098 11 6 -3.2670 6.1697 -2.6971 12 7 -4.2026 6.1947 -3.6211 13 14 -3.4115 7.2661 -1.1916 14 1 -4.1413 6.5420 -0.1200 15 1 -2.0540 7.6265 -0.7096 16 1 -4.1543 8.5015 -1.5486 17 6 -0.3227 3.0202 -1.5603 18 6 3.5959 1.1634 0.0060 19 8 4.2294 2.2093 0.0104 20 6 4.2616 -0.0827 0.0064 21 6 3.5340 -1.2221 0.0007 22 7 2.1800 -1.1803 -0.0050 23 6 1.4247 -2.4355 -0.0117 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.7683 2.4996 -2.0904 28 1 1.9664 4.9288 -1.7580 29 1 0.8794 4.8837 -0.3048 30 1 -0.6664 6.2971 -1.6830 31 1 -1.5461 5.0073 -0.8280 32 1 -4.9679 6.7822 -3.5206 33 1 -0.9341 3.0651 -0.6592 34 1 -0.6781 2.2782 -2.2752 35 1 5.3408 -0.1247 0.0113 36 1 4.0383 -2.1772 0.0006 37 1 1.2331 -2.7497 1.0142 38 1 0.4770 -2.2865 -0.5291 39 1 2.0021 -3.2042 -0.5252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228435054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:16 Heat of formation + Delta-G solvation = 16.068701 kcal Electronic energy + Delta-G solvation = -21663.390272 eV Core-core repulsion = 18381.042810 eV Total energy + Delta-G solvation = -3282.347461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.44706 -39.62222 -38.10720 -36.79716 -33.08236 -32.80140 -32.13822 -29.72160 -27.99922 -26.99052 -25.47411 -25.27314 -23.41765 -21.78106 -21.22937 -19.53562 -18.29651 -18.01193 -16.86795 -16.70613 -16.28504 -15.77411 -15.32453 -14.55953 -14.31942 -14.11509 -14.04975 -13.74136 -13.70207 -13.39857 -13.13048 -12.90949 -12.74033 -12.34688 -12.14496 -12.04402 -12.04031 -11.83940 -11.49448 -10.97311 -10.61457 -9.99849 -9.75103 -9.73503 -9.45922 -9.32663 -8.93849 -8.56715 -8.08404 -7.84126 -6.04227 -4.01463 1.00088 1.12398 2.17167 3.29132 3.37051 3.40559 3.43924 3.94088 4.00538 4.27582 4.43220 4.43939 4.60440 4.70688 4.80889 4.86441 4.88628 5.04804 5.16993 5.26754 5.28593 5.34767 5.39131 5.72777 5.75092 5.85865 5.97651 6.15274 6.18337 6.23105 6.33795 6.43876 6.45715 6.65893 6.75960 7.34252 7.60952 7.70314 7.84128 8.20011 8.64112 9.05700 9.57250 11.09073 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028760 B = 0.003947 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.355200 B = 7091.517965 C = 7648.524000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.136 3.864 3 C -0.062 4.062 4 O -0.294 6.294 5 C 0.059 3.941 6 C -0.003 4.003 7 N -0.451 5.451 8 C 0.130 3.870 9 C -0.506 4.506 10 H 0.080 0.920 11 C 0.068 3.932 12 N -0.901 5.901 13 Si 0.874 3.126 14 H -0.277 1.277 15 H -0.267 1.267 16 H -0.285 1.285 17 C -0.004 4.004 18 C 0.376 3.624 19 O -0.511 6.511 20 C -0.288 4.288 21 C 0.136 3.864 22 N -0.473 5.473 23 C 0.056 3.944 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.030 0.970 31 H -0.002 1.002 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.880 -22.262 9.381 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.028 3.972 3 C -0.112 4.112 4 O -0.208 6.208 5 C 0.002 3.998 6 C -0.132 4.132 7 N -0.174 5.174 8 C 0.003 3.997 9 C -0.544 4.544 10 H 0.098 0.902 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.701 3.299 14 H -0.203 1.203 15 H -0.191 1.191 16 H -0.210 1.210 17 C -0.133 4.133 18 C 0.267 3.733 19 O -0.397 6.397 20 C -0.313 4.313 21 C 0.009 3.991 22 N -0.163 5.163 23 C -0.086 4.086 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.016 0.984 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.881 -21.558 8.758 26.127 hybrid contribution -0.349 0.427 1.463 1.564 sum 11.532 -21.132 10.221 26.154 Atomic orbital electron populations 1.21092 0.87607 1.05068 1.04561 1.20777 0.95308 0.84922 0.96156 1.19578 0.92309 0.85590 1.13746 1.86221 1.72924 1.32791 1.28896 1.24292 0.96084 0.94696 0.84686 1.24103 0.97336 0.94196 0.97581 1.68930 1.04934 1.02543 1.41039 1.20739 0.91121 0.92075 0.95782 1.20959 1.02861 1.24038 1.06551 0.90179 1.24910 0.95548 0.96691 0.96208 1.69896 1.10789 1.39217 1.34088 0.86873 0.78639 0.80741 0.83622 1.20259 1.19127 1.21043 1.24340 0.94876 0.95410 0.98707 1.17703 0.88436 0.89908 0.77247 1.90829 1.69303 1.34903 1.44657 1.22355 1.01682 0.92776 1.14528 1.21773 0.81826 1.00669 0.94830 1.42862 1.05432 1.06476 1.61552 1.22402 0.98330 0.83807 1.04049 0.89086 0.90481 0.88103 0.88850 0.89721 0.91150 0.95250 0.98421 0.92662 0.90988 0.90209 0.83303 0.81855 0.90378 0.88828 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 8.80 36.00 0.32 -0.74 16 2 C 0.14 1.41 6.66 -81.81 -0.55 0.86 16 3 C -0.06 -0.91 5.60 -39.22 -0.22 -1.13 16 4 O -0.29 -5.08 8.90 -35.63 -0.32 -5.40 16 5 C 0.06 1.03 4.72 -26.20 -0.12 0.91 16 6 C 0.00 -0.06 7.52 -7.54 -0.06 -0.12 16 7 N -0.45 -10.07 6.32 -246.10 -1.55 -11.63 16 8 C 0.13 3.29 3.64 -4.98 -0.02 3.27 16 9 C -0.51 -14.86 9.94 -34.44 -0.34 -15.20 16 10 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 13 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 C 0.00 -0.07 7.55 -7.54 -0.06 -0.13 16 18 C 0.38 6.00 6.77 -37.07 -0.25 5.75 16 19 O -0.51 -10.46 17.72 -10.92 -0.19 -10.66 16 20 C -0.29 -3.12 10.00 -39.51 -0.39 -3.52 16 21 C 0.14 0.91 10.25 -17.04 -0.17 0.74 16 22 N -0.47 -3.29 3.01 -120.03 -0.36 -3.65 16 23 C 0.06 0.13 9.72 59.85 0.58 0.71 16 24 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.08 0.40 6.59 -51.93 -0.34 0.06 16 26 H 0.10 1.04 7.46 -51.93 -0.39 0.66 16 27 H 0.09 1.61 7.96 -51.93 -0.41 1.20 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 29 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 30 H 0.03 0.76 7.14 -51.93 -0.37 0.39 16 31 H 0.00 -0.05 6.73 -51.93 -0.35 -0.40 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.16 0.35 8.02 -52.48 -0.42 -0.07 16 37 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.09 0.18 6.48 -51.93 -0.34 -0.15 16 39 H 0.09 0.02 7.99 -51.93 -0.41 -0.40 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -38.13 325.46 -8.33 -46.46 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.53 Total: -3.38 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.38 Total: -6.68 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -1.14 Total: -42.49 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.51 Total: -16.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -38.13 -8.33 -46.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228435054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.528 kcal (2) G-P(sol) polarization free energy of solvation -38.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds