Wall clock time and date at job start Tue Mar 31 2020 01:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35435 * 119.69939 * 2 1 4 4 O 1.36099 * 120.40843 * 359.97438 * 3 2 1 5 5 C 1.42902 * 117.00162 * 269.71939 * 4 3 2 6 6 C 1.53507 * 114.17020 * 210.00743 * 5 4 3 7 7 N 1.47489 * 87.92897 * 220.32989 * 6 5 4 8 8 C 1.46904 * 110.99948 * 138.70309 * 7 6 5 9 9 C 1.50696 * 109.46794 * 169.99650 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.47481 * 87.83412 * 27.01215 * 7 6 5 18 18 C 1.41793 * 119.17153 * 179.72397 * 3 2 1 19 19 O 1.22288 * 120.67671 * 180.23100 * 18 3 2 20 20 C 1.41277 * 118.64045 * 0.24518 * 18 3 2 21 21 C 1.35191 * 119.32528 * 0.02562 * 20 18 3 22 22 N 1.35459 * 120.79159 * 359.97438 * 21 20 18 23 23 C 1.46497 * 119.26693 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.46704 * 90.00350 * 1 2 3 25 25 H 1.08995 * 109.47460 * 210.00013 * 1 2 3 26 26 H 1.09002 * 109.47316 * 330.00642 * 1 2 3 27 27 H 1.09001 * 113.25573 * 342.95789 * 5 4 3 28 28 H 1.08997 * 113.47543 * 105.56799 * 6 5 4 29 29 H 1.08999 * 113.53382 * 335.09910 * 6 5 4 30 30 H 1.09005 * 109.47078 * 49.99935 * 8 7 6 31 31 H 1.09002 * 109.47005 * 290.00151 * 8 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 33 33 H 1.08990 * 113.47671 * 87.75950 * 17 7 6 34 34 H 1.09001 * 113.47203 * 218.22506 * 17 7 6 35 35 H 1.08002 * 120.33978 * 180.02562 * 20 18 3 36 36 H 1.08006 * 119.60307 * 179.97438 * 21 20 18 37 37 H 1.08997 * 109.47224 * 89.99650 * 23 22 21 38 38 H 1.08999 * 109.47009 * 209.99855 * 23 22 21 39 39 H 1.08998 * 109.47093 * 329.99809 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1780 1.1764 0.0000 4 8 1.4997 2.3564 -0.0005 5 6 1.1823 2.9217 -1.2740 6 6 1.1088 4.4550 -1.2803 7 7 -0.0671 4.3416 -2.1634 8 6 -1.1078 5.3052 -1.7806 9 6 -2.1795 5.3342 -2.8396 10 1 -2.0961 4.7000 -3.7098 11 6 -3.2670 6.1697 -2.6971 12 7 -4.2026 6.1947 -3.6211 13 14 -3.4115 7.2661 -1.1916 14 1 -4.1413 6.5420 -0.1200 15 1 -2.0540 7.6265 -0.7096 16 1 -4.1543 8.5015 -1.5486 17 6 -0.3227 3.0202 -1.5603 18 6 3.5959 1.1634 0.0060 19 8 4.2294 2.2093 0.0104 20 6 4.2616 -0.0827 0.0064 21 6 3.5340 -1.2221 0.0007 22 7 2.1800 -1.1803 -0.0050 23 6 1.4247 -2.4355 -0.0117 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.7683 2.4996 -2.0904 28 1 1.9664 4.9288 -1.7580 29 1 0.8794 4.8837 -0.3048 30 1 -0.6664 6.2971 -1.6830 31 1 -1.5461 5.0073 -0.8280 32 1 -4.9679 6.7822 -3.5206 33 1 -0.9341 3.0651 -0.6592 34 1 -0.6781 2.2782 -2.2752 35 1 5.3408 -0.1247 0.0113 36 1 4.0383 -2.1772 0.0006 37 1 1.2331 -2.7497 1.0142 38 1 0.4770 -2.2865 -0.5291 39 1 2.0021 -3.2042 -0.5252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228435054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:14 Heat of formation + Delta-G solvation = -13.493759 kcal Electronic energy + Delta-G solvation = -21664.672196 eV Core-core repulsion = 18381.042810 eV Total energy + Delta-G solvation = -3283.629386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32803 -41.07539 -39.15026 -38.05877 -34.98507 -33.84259 -33.05254 -31.60604 -28.79850 -27.66827 -27.10870 -26.88662 -24.39651 -23.07074 -22.59877 -21.09964 -19.37290 -18.96509 -18.85952 -17.64111 -17.32045 -16.72448 -16.59284 -16.29026 -15.88348 -15.55021 -14.99323 -14.81648 -14.64724 -14.35856 -14.25217 -14.07031 -13.94151 -13.77415 -13.52842 -13.34688 -13.10418 -12.75506 -12.62313 -12.50272 -12.48042 -11.82023 -11.72233 -11.47196 -11.07820 -10.81868 -10.26840 -10.10689 -9.80315 -8.85792 -8.32161 -6.36342 0.06927 0.34933 1.31829 1.34723 1.45653 1.53965 2.31517 2.37660 2.90391 2.99942 3.25611 3.32056 3.41254 3.74625 3.87514 3.91667 3.97095 4.28939 4.34535 4.38468 4.53122 4.54457 4.55571 4.61363 4.63309 4.67209 4.69723 4.76999 4.84884 4.87710 4.95855 5.10849 5.36842 5.39909 5.61860 5.76532 5.90807 5.92020 6.43330 6.48414 6.68513 7.17238 7.26914 8.84603 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028760 B = 0.003947 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.355200 B = 7091.517965 C = 7648.524000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.172 3.828 3 C -0.124 4.124 4 O -0.306 6.306 5 C 0.080 3.920 6 C -0.007 4.007 7 N -0.477 5.477 8 C 0.141 3.859 9 C -0.519 4.519 10 H 0.036 0.964 11 C 0.012 3.988 12 N -0.944 5.944 13 Si 0.946 3.054 14 H -0.261 1.261 15 H -0.256 1.256 16 H -0.277 1.277 17 C 0.004 3.996 18 C 0.349 3.651 19 O -0.595 6.595 20 C -0.321 4.321 21 C 0.175 3.825 22 N -0.458 5.458 23 C 0.040 3.960 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.007 0.993 32 H 0.269 0.731 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.156 0.844 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.526 -26.044 11.169 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.061 3.939 3 C -0.174 4.174 4 O -0.221 6.221 5 C 0.023 3.977 6 C -0.136 4.136 7 N -0.201 5.201 8 C 0.013 3.987 9 C -0.557 4.557 10 H 0.055 0.945 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.769 3.231 14 H -0.185 1.185 15 H -0.180 1.180 16 H -0.203 1.203 17 C -0.125 4.125 18 C 0.247 3.753 19 O -0.488 6.488 20 C -0.345 4.345 21 C 0.047 3.953 22 N -0.144 5.144 23 C -0.099 4.099 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.173 0.827 36 H 0.245 0.755 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.520 -25.433 10.551 29.848 hybrid contribution -0.298 1.251 0.849 1.540 sum 11.222 -24.183 11.400 28.995 Atomic orbital electron populations 1.21227 0.85857 1.06205 1.05342 1.20945 0.96361 0.84849 0.91772 1.19755 0.92301 0.86162 1.19177 1.86195 1.73236 1.34637 1.27993 1.23888 0.95054 0.93253 0.85546 1.24133 0.96197 0.96338 0.96973 1.68825 1.05113 1.03677 1.42482 1.20507 0.90774 0.92811 0.94607 1.21134 1.04562 1.23644 1.06344 0.94522 1.25824 0.94871 0.98167 0.99696 1.70037 1.11627 1.40392 1.36426 0.85732 0.79257 0.78659 0.79454 1.18541 1.18044 1.20258 1.24322 0.95851 0.93666 0.98699 1.18422 0.89266 0.90935 0.76664 1.90770 1.70531 1.37313 1.50185 1.22304 1.02526 0.92132 1.17533 1.22574 0.81418 1.01632 0.89702 1.43500 1.06172 1.07115 1.57658 1.22950 0.98862 0.81720 1.06343 0.88263 0.86222 0.90159 0.89092 0.89723 0.91197 0.95766 0.97575 0.92204 0.90710 0.89257 0.82672 0.75525 0.88033 0.87885 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.80 71.24 0.63 -1.14 16 2 C 0.17 3.14 6.66 41.29 0.28 3.42 16 3 C -0.12 -3.73 5.60 22.50 0.13 -3.61 16 4 O -0.31 -11.00 8.90 -79.78 -0.71 -11.71 16 5 C 0.08 2.90 4.72 30.94 0.15 3.04 16 6 C -0.01 -0.30 7.52 83.57 0.63 0.33 16 7 N -0.48 -21.93 6.32 -932.92 -5.89 -27.82 16 8 C 0.14 7.22 3.64 85.55 0.31 7.54 16 9 C -0.52 -31.36 9.94 25.60 0.25 -31.10 16 10 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 11 C 0.01 0.73 5.47 84.66 0.46 1.19 16 12 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 13 Si 0.95 45.18 27.47 68.60 1.88 47.06 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.00 0.14 7.55 83.58 0.63 0.77 16 18 C 0.35 11.74 6.77 23.90 0.16 11.91 16 19 O -0.59 -26.75 17.72 8.63 0.15 -26.60 16 20 C -0.32 -6.65 10.00 22.31 0.22 -6.43 16 21 C 0.17 1.54 10.25 83.43 0.86 2.39 16 22 N -0.46 -4.10 3.01 -533.66 -1.60 -5.71 16 23 C 0.04 -0.09 9.72 127.77 1.24 1.16 16 24 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.12 0.61 6.59 -2.39 -0.02 0.60 16 26 H 0.08 1.53 7.46 -2.39 -0.02 1.52 16 27 H 0.09 3.30 7.96 -2.39 -0.02 3.28 16 28 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.07 2.83 7.91 -2.39 -0.02 2.81 16 30 H 0.02 1.26 7.14 -2.38 -0.02 1.24 16 31 H 0.01 0.32 6.73 -2.39 -0.02 0.30 16 32 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.07 2.78 7.42 -2.39 -0.02 2.76 16 34 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.23 -0.79 8.02 -2.91 -0.02 -0.81 16 37 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.10 -0.29 6.48 -2.39 -0.02 -0.30 16 39 H 0.13 -0.99 7.99 -2.39 -0.02 -1.01 16 Total: -1.00 -92.32 325.46 1.06 -91.25 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 0.99 Total: 3.62 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.95 Total: -10.54 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -7.20 Total: -93.08 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.56 Total: -38.31 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -92.32 1.06 -91.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228435054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.761 kcal (2) G-P(sol) polarization free energy of solvation -92.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds