Wall clock time and date at job start Tue Mar 31 2020 01:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35433 * 119.69796 * 2 1 4 4 O 1.36100 * 120.41353 * 359.97438 * 3 2 1 5 5 C 1.42900 * 116.99770 * 89.99781 * 4 3 2 6 6 H 1.08998 * 110.64636 * 31.68382 * 5 4 3 7 7 C 1.55158 * 110.71899 * 155.02362 * 5 4 3 8 8 C 1.54913 * 101.58043 * 153.86454 * 7 5 4 9 9 N 1.47420 * 104.83478 * 322.98905 * 8 7 5 10 10 C 1.36930 * 125.65304 * 204.09558 * 9 8 7 11 11 H 1.07998 * 120.00409 * 180.02562 * 10 9 8 12 12 C 1.38820 * 119.99885 * 0.04118 * 10 9 8 13 13 N 1.31620 * 119.99659 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00008 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46865 * 90.00222 * 14 12 10 16 16 H 1.48498 * 109.46927 * 210.00023 * 14 12 10 17 17 H 1.48496 * 109.47130 * 329.99901 * 14 12 10 18 18 C 1.47029 * 108.70207 * 24.13046 * 9 8 7 19 19 C 1.41801 * 119.17023 * 179.74438 * 3 2 1 20 20 O 1.22290 * 120.67915 * 180.24224 * 19 3 2 21 21 C 1.41274 * 118.63997 * 0.52057 * 19 3 2 22 22 C 1.35197 * 119.32581 * 359.74802 * 21 19 3 23 23 N 1.35459 * 120.79030 * 359.97438 * 22 21 19 24 24 C 1.46495 * 119.26749 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47152 * 269.72510 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72610 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72591 * 1 2 3 28 28 H 1.08994 * 111.00370 * 271.93847 * 7 5 4 29 29 H 1.09002 * 111.00319 * 35.79038 * 7 5 4 30 30 H 1.09003 * 110.36162 * 204.15616 * 8 7 5 31 31 H 1.08994 * 110.37015 * 81.83209 * 8 7 5 32 32 H 0.97007 * 119.99627 * 180.02562 * 13 12 10 33 33 H 1.09006 * 109.88306 * 239.52350 * 18 9 8 34 34 H 1.08994 * 109.87874 * 118.35840 * 18 9 8 35 35 H 1.08002 * 120.33739 * 179.71761 * 21 19 3 36 36 H 1.08000 * 119.60321 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.46949 * 270.02702 * 24 23 22 38 38 H 1.09000 * 109.47363 * 30.02344 * 24 23 22 39 39 H 1.08999 * 109.47077 * 150.02631 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1780 1.1764 0.0000 4 8 1.4998 2.3564 -0.0005 5 6 1.1760 2.9191 1.2725 6 1 1.9386 2.6670 2.0093 7 6 0.9990 4.4567 1.1640 8 6 0.0416 4.7438 2.3476 9 7 -0.8776 3.5917 2.3775 10 6 -2.1392 3.5909 2.9097 11 1 -2.7363 2.6914 2.8826 12 6 -2.6511 4.7465 3.4839 13 7 -1.9238 5.8431 3.5162 14 14 -4.3720 4.7453 4.2106 15 1 -4.3039 4.3609 5.6433 16 1 -4.9612 6.1030 4.0898 17 1 -5.2186 3.7711 3.4763 18 6 -0.2150 2.4433 1.7419 19 6 3.5959 1.1634 0.0055 20 8 4.2295 2.2093 0.0101 21 6 4.2617 -0.0827 -0.0004 22 6 3.5340 -1.2221 -0.0059 23 7 2.1801 -1.1803 -0.0053 24 6 1.4248 -2.4355 -0.0120 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.9511 4.9700 1.2983 29 1 0.5396 4.7311 0.2144 30 1 -0.5120 5.6663 2.1724 31 1 0.6007 4.8074 3.2810 32 1 -2.2813 6.6505 3.9178 33 1 -0.7994 2.1052 0.8861 34 1 -0.1060 1.6329 2.4625 35 1 5.3409 -0.1246 -0.0010 36 1 4.0383 -2.1771 -0.0101 37 1 1.2376 -2.7414 -1.0413 38 1 1.9999 -3.2084 0.4978 39 1 0.4748 -2.2906 0.5025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228435970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:25 Heat of formation + Delta-G solvation = 2.336011 kcal Electronic energy + Delta-G solvation = -22210.859067 eV Core-core repulsion = 18927.916112 eV Total energy + Delta-G solvation = -3282.942956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.28650 -38.59808 -37.65747 -35.97299 -32.94749 -32.47232 -31.76651 -29.11060 -28.20712 -27.14709 -26.43572 -24.50522 -23.21229 -21.62378 -20.18897 -20.12653 -18.11706 -17.72218 -16.98213 -16.56827 -16.03797 -15.61755 -14.79172 -14.49413 -14.33529 -13.92290 -13.61958 -13.60890 -13.22646 -13.11870 -13.02838 -12.69783 -12.49399 -12.09881 -11.90133 -11.79098 -11.50670 -11.30016 -10.94395 -10.78353 -10.34365 -10.10654 -9.76542 -9.65671 -9.50220 -9.28496 -8.78599 -8.63731 -7.71693 -6.82323 -5.63481 -3.06065 1.17870 1.26804 2.32305 3.40311 3.44333 3.47357 3.62652 4.13201 4.17308 4.41277 4.50434 4.59374 4.72608 4.90084 4.99244 5.15962 5.33427 5.45692 5.47572 5.49467 5.56088 5.59583 5.85142 5.89052 5.93159 5.94814 6.34822 6.44325 6.54056 6.54656 6.68577 6.76599 6.78796 6.84587 7.55356 7.63050 7.83266 7.91396 8.36189 8.38925 9.22408 9.83475 10.48746 11.40248 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.004683 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.642272 B = 5978.038429 C = 6841.551914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.132 3.868 3 C -0.057 4.057 4 O -0.297 6.297 5 C 0.080 3.920 6 H 0.062 0.938 7 C -0.134 4.134 8 C 0.152 3.848 9 N -0.601 5.601 10 C -0.224 4.224 11 H 0.077 0.923 12 C -0.010 4.010 13 N -0.921 5.921 14 Si 0.915 3.085 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.116 3.884 19 C 0.376 3.624 20 O -0.513 6.513 21 C -0.290 4.290 22 C 0.136 3.864 23 N -0.473 5.473 24 C 0.056 3.944 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.014 0.986 32 H 0.253 0.747 33 H 0.038 0.962 34 H 0.017 0.983 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -19.178 -7.620 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.025 3.975 3 C -0.108 4.108 4 O -0.212 6.212 5 C 0.023 3.977 6 H 0.080 0.920 7 C -0.173 4.173 8 C 0.028 3.972 9 N -0.328 5.328 10 C -0.352 4.352 11 H 0.095 0.905 12 C -0.206 4.206 13 N -0.569 5.569 14 Si 0.746 3.254 15 H -0.217 1.217 16 H -0.216 1.216 17 H -0.207 1.207 18 C -0.011 4.011 19 C 0.267 3.733 20 O -0.399 6.399 21 C -0.316 4.316 22 C 0.009 3.991 23 N -0.163 5.163 24 C -0.085 4.085 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.166 0.834 36 H 0.180 0.820 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.281 -18.532 -7.669 21.337 hybrid contribution -0.689 -0.361 0.678 1.032 sum 6.592 -18.894 -6.991 21.196 Atomic orbital electron populations 1.21281 0.87661 1.04912 1.04687 1.20799 0.95330 0.84888 0.96449 1.19634 0.92290 0.85834 1.13004 1.86201 1.73162 1.32498 1.29372 1.23571 0.95615 0.95192 0.83275 0.92019 1.23137 1.00475 0.91802 1.01895 1.21985 0.89240 0.94400 0.91609 1.44406 1.13617 1.06421 1.68393 1.19049 0.89062 0.96649 1.30430 0.90515 1.24805 0.98676 0.95840 1.01273 1.69792 1.35986 1.01243 1.49881 0.86068 0.83603 0.76882 0.78890 1.21672 1.21593 1.20717 1.21942 0.92012 0.91561 0.95551 1.17724 0.88502 0.89868 0.77202 1.90816 1.69323 1.34944 1.44828 1.22333 1.01572 0.92833 1.14845 1.21748 0.81876 1.00578 0.94913 1.42846 1.05379 1.06468 1.61647 1.22385 0.98357 0.83855 1.03945 0.88904 0.90797 0.87769 0.91616 0.91027 0.87040 0.96793 0.93638 0.94436 0.96534 0.83408 0.81962 0.90443 0.89244 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.16 36.01 0.26 -1.16 16 2 C 0.13 1.67 6.66 -81.80 -0.55 1.13 16 3 C -0.06 -0.98 5.60 -39.22 -0.22 -1.20 16 4 O -0.30 -5.97 8.65 -35.63 -0.31 -6.27 16 5 C 0.08 1.67 3.47 -24.89 -0.09 1.59 16 6 H 0.06 1.32 7.97 -51.93 -0.41 0.91 16 7 C -0.13 -2.99 6.81 -24.58 -0.17 -3.15 16 8 C 0.15 3.93 5.89 -2.53 -0.01 3.92 16 9 N -0.60 -15.92 3.39 -170.07 -0.58 -16.50 16 10 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 11 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 12 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 13 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 14 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.12 2.52 5.41 -3.06 -0.02 2.50 16 19 C 0.38 6.72 6.77 -37.07 -0.25 6.47 16 20 O -0.51 -11.41 17.72 -10.92 -0.19 -11.61 16 21 C -0.29 -3.61 10.00 -39.51 -0.39 -4.01 16 22 C 0.14 1.13 10.25 -17.03 -0.17 0.96 16 23 N -0.47 -4.15 3.01 -120.03 -0.36 -4.51 16 24 C 0.06 0.22 9.73 59.84 0.58 0.81 16 25 H 0.09 1.07 6.83 -51.93 -0.35 0.72 16 26 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 27 H 0.10 1.39 6.25 -51.93 -0.32 1.06 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.11 3.17 5.87 -51.93 -0.30 2.86 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.78 5.73 -51.93 -0.30 0.48 16 34 H 0.02 0.36 7.74 -51.93 -0.40 -0.05 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.16 0.57 8.02 -52.49 -0.42 0.15 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.15 7.99 -51.93 -0.41 -0.27 16 39 H 0.09 0.35 6.46 -51.93 -0.34 0.02 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -36.78 313.46 -7.73 -44.51 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.27 Total: -1.72 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.28 Total: 1.02 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.38 Total: -47.68 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.50 Total: -17.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.78 -7.73 -44.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228435970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.849 kcal (2) G-P(sol) polarization free energy of solvation -36.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds