Wall clock time and date at job start Tue Mar 31 2020 01:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35433 * 119.69796 * 2 1 4 4 O 1.36100 * 120.41353 * 359.97438 * 3 2 1 5 5 C 1.42900 * 116.99770 * 89.99781 * 4 3 2 6 6 H 1.08998 * 110.64636 * 31.68382 * 5 4 3 7 7 C 1.55158 * 110.71899 * 155.02362 * 5 4 3 8 8 C 1.54913 * 101.58043 * 153.86454 * 7 5 4 9 9 N 1.47420 * 104.83478 * 322.98905 * 8 7 5 10 10 C 1.36930 * 125.65304 * 204.09558 * 9 8 7 11 11 H 1.07998 * 120.00409 * 180.02562 * 10 9 8 12 12 C 1.38820 * 119.99885 * 0.04118 * 10 9 8 13 13 N 1.31620 * 119.99659 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00008 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46865 * 90.00222 * 14 12 10 16 16 H 1.48498 * 109.46927 * 210.00023 * 14 12 10 17 17 H 1.48496 * 109.47130 * 329.99901 * 14 12 10 18 18 C 1.47029 * 108.70207 * 24.13046 * 9 8 7 19 19 C 1.41801 * 119.17023 * 179.74438 * 3 2 1 20 20 O 1.22290 * 120.67915 * 180.24224 * 19 3 2 21 21 C 1.41274 * 118.63997 * 0.52057 * 19 3 2 22 22 C 1.35197 * 119.32581 * 359.74802 * 21 19 3 23 23 N 1.35459 * 120.79030 * 359.97438 * 22 21 19 24 24 C 1.46495 * 119.26749 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47152 * 269.72510 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72610 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72591 * 1 2 3 28 28 H 1.08994 * 111.00370 * 271.93847 * 7 5 4 29 29 H 1.09002 * 111.00319 * 35.79038 * 7 5 4 30 30 H 1.09003 * 110.36162 * 204.15616 * 8 7 5 31 31 H 1.08994 * 110.37015 * 81.83209 * 8 7 5 32 32 H 0.97007 * 119.99627 * 180.02562 * 13 12 10 33 33 H 1.09006 * 109.88306 * 239.52350 * 18 9 8 34 34 H 1.08994 * 109.87874 * 118.35840 * 18 9 8 35 35 H 1.08002 * 120.33739 * 179.71761 * 21 19 3 36 36 H 1.08000 * 119.60321 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.46949 * 270.02702 * 24 23 22 38 38 H 1.09000 * 109.47363 * 30.02344 * 24 23 22 39 39 H 1.08999 * 109.47077 * 150.02631 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1780 1.1764 0.0000 4 8 1.4998 2.3564 -0.0005 5 6 1.1760 2.9191 1.2725 6 1 1.9386 2.6670 2.0093 7 6 0.9990 4.4567 1.1640 8 6 0.0416 4.7438 2.3476 9 7 -0.8776 3.5917 2.3775 10 6 -2.1392 3.5909 2.9097 11 1 -2.7363 2.6914 2.8826 12 6 -2.6511 4.7465 3.4839 13 7 -1.9238 5.8431 3.5162 14 14 -4.3720 4.7453 4.2106 15 1 -4.3039 4.3609 5.6433 16 1 -4.9612 6.1030 4.0898 17 1 -5.2186 3.7711 3.4763 18 6 -0.2150 2.4433 1.7419 19 6 3.5959 1.1634 0.0055 20 8 4.2295 2.2093 0.0101 21 6 4.2617 -0.0827 -0.0004 22 6 3.5340 -1.2221 -0.0059 23 7 2.1801 -1.1803 -0.0053 24 6 1.4248 -2.4355 -0.0120 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.9511 4.9700 1.2983 29 1 0.5396 4.7311 0.2144 30 1 -0.5120 5.6663 2.1724 31 1 0.6007 4.8074 3.2810 32 1 -2.2813 6.6505 3.9178 33 1 -0.7994 2.1052 0.8861 34 1 -0.1060 1.6329 2.4625 35 1 5.3409 -0.1246 -0.0010 36 1 4.0383 -2.1771 -0.0101 37 1 1.2376 -2.7414 -1.0413 38 1 1.9999 -3.2084 0.4978 39 1 0.4748 -2.2906 0.5025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228435970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:25 Heat of formation + Delta-G solvation = -22.847366 kcal Electronic energy + Delta-G solvation = -22211.951101 eV Core-core repulsion = 18927.916112 eV Total energy + Delta-G solvation = -3284.034989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30802 -40.02232 -38.97509 -37.67590 -34.34766 -33.85813 -32.97755 -31.07132 -29.58453 -28.26158 -27.45060 -26.46133 -24.32573 -22.62681 -22.14972 -21.85044 -19.31992 -19.00699 -18.73948 -17.55846 -17.10103 -16.83514 -16.61036 -16.13238 -15.81828 -15.14618 -14.89673 -14.63381 -14.41804 -14.34192 -14.31261 -13.94582 -13.75855 -13.45052 -13.33902 -13.11178 -12.90607 -12.67414 -12.59095 -12.48799 -12.25930 -12.00994 -11.77237 -11.42589 -11.22083 -10.76448 -10.24857 -10.11336 -8.93722 -8.85938 -7.77492 -5.24140 0.07291 0.34939 1.48422 1.51473 1.54432 1.60279 2.39080 2.52246 2.95448 3.34123 3.34758 3.62371 3.76332 3.77974 3.88912 3.97687 4.06582 4.08918 4.32803 4.49467 4.53213 4.54621 4.62068 4.66982 4.71854 4.83243 4.86817 4.92215 4.95828 5.00387 5.15010 5.37798 5.43597 5.51814 5.72646 5.77611 5.91429 6.24617 6.48143 7.06359 7.17443 7.73336 8.39117 9.25714 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.004683 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.642272 B = 5978.038429 C = 6841.551914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.170 3.830 3 C -0.124 4.124 4 O -0.310 6.310 5 C 0.092 3.908 6 H 0.048 0.952 7 C -0.127 4.127 8 C 0.160 3.840 9 N -0.622 5.622 10 C -0.240 4.240 11 H 0.091 0.909 12 C -0.069 4.069 13 N -0.953 5.953 14 Si 0.987 3.013 15 H -0.286 1.286 16 H -0.295 1.295 17 H -0.263 1.263 18 C 0.123 3.877 19 C 0.348 3.652 20 O -0.596 6.596 21 C -0.321 4.321 22 C 0.176 3.824 23 N -0.457 5.457 24 C 0.040 3.960 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.084 0.916 31 H -0.010 1.010 32 H 0.248 0.752 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.158 0.842 36 H 0.231 0.769 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -24.452 -8.173 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.059 3.941 3 C -0.174 4.174 4 O -0.225 6.225 5 C 0.035 3.965 6 H 0.066 0.934 7 C -0.165 4.165 8 C 0.035 3.965 9 N -0.350 5.350 10 C -0.368 4.368 11 H 0.108 0.892 12 C -0.261 4.261 13 N -0.603 5.603 14 Si 0.815 3.185 15 H -0.213 1.213 16 H -0.222 1.222 17 H -0.188 1.188 18 C -0.002 4.002 19 C 0.246 3.754 20 O -0.490 6.490 21 C -0.345 4.345 22 C 0.048 3.952 23 N -0.144 5.144 24 C -0.099 4.099 25 H 0.112 0.888 26 H 0.141 0.859 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.008 0.992 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.175 0.825 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.009 -23.919 -8.244 26.003 hybrid contribution -0.333 0.965 0.800 1.297 sum 5.676 -22.954 -7.444 24.789 Atomic orbital electron populations 1.21355 0.86183 1.06156 1.05008 1.20910 0.96227 0.84971 0.92007 1.19875 0.92498 0.86287 1.18737 1.86179 1.73638 1.34649 1.28013 1.23223 0.94911 0.94097 0.84233 0.93365 1.22952 0.99794 0.93620 1.00179 1.21687 0.89342 0.93681 0.91811 1.44704 1.13674 1.07858 1.68736 1.19524 0.89864 0.97212 1.30195 0.89160 1.25750 1.02811 0.95505 1.02081 1.70047 1.37751 1.01713 1.50775 0.84950 0.78803 0.76762 0.78008 1.21338 1.22184 1.18779 1.22015 0.92073 0.90318 0.95801 1.18453 0.89171 0.91070 0.76668 1.90758 1.70487 1.37402 1.50305 1.22292 1.02552 0.91990 1.17688 1.22606 0.81328 1.01667 0.89615 1.43496 1.06229 1.07001 1.57679 1.22959 0.98815 0.81681 1.06439 0.88814 0.85944 0.90178 0.91033 0.91176 0.89842 0.99194 0.94233 0.92859 0.95351 0.82468 0.75229 0.87819 0.85413 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.16 71.24 0.51 -1.93 16 2 C 0.17 3.85 6.66 41.29 0.28 4.13 16 3 C -0.12 -4.34 5.60 22.50 0.13 -4.21 16 4 O -0.31 -13.01 8.65 -79.80 -0.69 -13.70 16 5 C 0.09 4.06 3.47 31.78 0.11 4.17 16 6 H 0.05 2.21 7.97 -2.39 -0.02 2.19 16 7 C -0.13 -5.99 6.81 31.99 0.22 -5.78 16 8 C 0.16 8.75 5.89 86.86 0.51 9.26 16 9 N -0.62 -33.76 3.39 -691.97 -2.35 -36.11 16 10 C -0.24 -13.53 10.27 84.04 0.86 -12.67 16 11 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 12 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 13 N -0.95 -58.40 10.09 21.65 0.22 -58.18 16 14 Si 0.99 45.53 29.55 68.60 2.03 47.56 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 18 C 0.12 5.40 5.41 86.73 0.47 5.87 16 19 C 0.35 13.07 6.77 23.90 0.16 13.23 16 20 O -0.60 -29.07 17.72 8.62 0.15 -28.92 16 21 C -0.32 -7.59 10.00 22.32 0.22 -7.37 16 22 C 0.18 2.02 10.25 83.43 0.86 2.87 16 23 N -0.46 -5.58 3.01 -533.65 -1.60 -7.18 16 24 C 0.04 0.02 9.73 127.77 1.24 1.26 16 25 H 0.09 1.84 6.83 -2.39 -0.02 1.83 16 26 H 0.12 1.10 6.57 -2.39 -0.02 1.08 16 27 H 0.08 2.00 6.25 -2.38 -0.01 1.98 16 28 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.08 5.04 5.87 -2.39 -0.01 5.03 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 32 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 33 H 0.05 2.19 5.73 -2.38 -0.01 2.17 16 34 H 0.03 1.18 7.74 -2.39 -0.02 1.17 16 35 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.23 -0.34 8.02 -2.91 -0.02 -0.37 16 37 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.13 -0.73 7.99 -2.39 -0.02 -0.74 16 39 H 0.10 0.03 6.46 -2.39 -0.02 0.02 16 Total: -1.00 -90.13 313.46 4.84 -85.28 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.06 Total: 5.93 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.03 Total: 5.33 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.74 Total: -101.48 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.54 Total: -42.62 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -90.13 4.84 -85.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228435970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.434 kcal (2) G-P(sol) polarization free energy of solvation -90.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds