Wall clock time and date at job start Tue Mar 31 2020 00:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35763 * 117.00075 * 2 1 4 4 N 1.32216 * 119.62211 * 359.97438 * 3 2 1 5 5 C 1.31953 * 121.70182 * 179.72606 * 4 3 2 6 6 C 1.38542 * 120.75447 * 0.58365 * 5 4 3 7 7 O 1.35992 * 120.41112 * 179.70044 * 6 5 4 8 8 C 1.42902 * 117.00316 * 184.98778 * 7 6 5 9 9 H 1.09003 * 110.88535 * 38.14331 * 8 7 6 10 10 C 1.55161 * 111.00711 * 162.07234 * 8 7 6 11 11 C 1.54336 * 103.02026 * 153.38159 * 10 8 7 12 12 N 1.47015 * 107.26697 * 338.13984 * 11 10 8 13 13 C 1.36939 * 125.65118 * 178.84922 * 12 11 10 14 14 H 1.07993 * 120.00037 * 179.68944 * 13 12 11 15 15 C 1.38814 * 119.99379 * 359.69462 * 13 12 11 16 16 N 1.31614 * 120.00451 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99604 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47094 * 270.00105 * 17 15 13 19 19 H 1.48504 * 109.47079 * 29.99742 * 17 15 13 20 20 H 1.48504 * 109.46960 * 149.99627 * 17 15 13 21 21 C 1.47428 * 108.70262 * 358.58485 * 12 11 10 22 22 C 1.39186 * 119.17958 * 359.43528 * 6 5 4 23 23 C 1.38403 * 118.43813 * 0.26708 * 22 6 5 24 24 C 1.50700 * 120.41509 * 180.02562 * 23 22 6 25 25 H 1.09003 * 109.46670 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46995 * 299.99530 * 1 2 3 27 27 H 1.08992 * 109.46953 * 60.00065 * 1 2 3 28 28 H 1.08006 * 119.62366 * 180.31264 * 5 4 3 29 29 H 1.09003 * 110.71593 * 271.93591 * 10 8 7 30 30 H 1.09000 * 110.71937 * 35.03432 * 10 8 7 31 31 H 1.09000 * 109.98753 * 218.66296 * 11 10 8 32 32 H 1.09004 * 109.77778 * 97.49865 * 11 10 8 33 33 H 0.96995 * 120.00471 * 180.02562 * 16 15 13 34 34 H 1.09011 * 110.36756 * 143.19416 * 21 12 11 35 35 H 1.08994 * 110.36960 * 265.40594 * 21 12 11 36 36 H 1.08000 * 120.78190 * 180.25442 * 22 6 5 37 37 H 1.09004 * 109.46849 * 90.00500 * 24 23 22 38 38 H 1.08997 * 109.47202 * 210.00345 * 24 23 22 39 39 H 1.09005 * 109.47306 * 330.00675 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3180 2.3137 -0.0005 5 6 1.8740 3.5104 0.0048 6 6 3.2522 3.6513 -0.0009 7 8 3.8178 4.8880 -0.0015 8 6 5.2407 4.9507 -0.1182 9 1 5.6077 4.1918 -0.8093 10 6 5.7014 6.3677 -0.5509 11 6 7.1302 6.4599 0.0253 12 7 7.2241 5.4806 1.1178 13 6 8.3385 5.2333 1.8743 14 1 8.3041 4.4938 2.6606 15 6 9.5121 5.9333 1.6305 16 7 9.5541 6.8343 0.6720 17 14 11.0320 5.5966 2.6630 18 1 11.0353 6.4937 3.8463 19 1 11.0202 4.1819 3.1146 20 1 12.2487 5.8462 1.8490 21 6 5.9181 4.8133 1.2681 22 6 4.0509 2.5113 -0.0005 23 6 3.4323 1.2732 0.0001 24 6 4.2539 0.0099 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.2475 4.3902 0.0093 29 1 5.7150 6.4537 -1.6375 30 1 5.0598 7.1323 -0.1129 31 1 7.3127 7.4633 0.4101 32 1 7.8571 6.2204 -0.7509 33 1 10.3743 7.3232 0.5014 34 1 6.0561 3.7618 1.5204 35 1 5.3235 5.3114 2.0338 36 1 5.1279 2.5911 -0.0007 37 1 4.4516 -0.2941 1.0291 38 1 3.7062 -0.7802 -0.5124 39 1 5.1984 0.1902 -0.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228664383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:44 Heat of formation + Delta-G solvation = -10.671137 kcal Electronic energy + Delta-G solvation = -21541.796339 eV Core-core repulsion = 18258.289351 eV Total energy + Delta-G solvation = -3283.506988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90479 -39.19283 -37.50884 -36.13115 -33.75641 -32.38227 -30.27043 -29.19495 -27.82892 -27.64185 -26.67554 -24.60797 -23.03540 -22.15676 -20.40766 -20.18045 -18.34394 -17.64789 -17.42753 -16.84320 -16.12627 -15.10206 -14.88021 -14.66303 -14.41089 -14.17671 -13.85290 -13.48113 -13.26056 -12.99198 -12.84606 -12.61550 -12.39067 -12.09858 -12.06360 -11.75914 -11.48435 -11.08089 -11.01695 -10.83883 -10.41475 -10.31999 -10.13288 -9.94027 -9.79175 -9.70397 -9.41534 -8.68105 -7.83273 -6.94426 -5.79233 -3.14209 1.07727 1.33608 3.02888 3.35895 3.38108 3.42580 3.44109 3.72935 4.31838 4.43952 4.67790 4.88976 4.94661 5.13835 5.18898 5.20089 5.23235 5.32037 5.45167 5.48161 5.54044 5.60909 5.61762 5.62976 5.83519 6.02201 6.11946 6.14541 6.24358 6.36601 6.38568 6.50337 6.59984 7.14141 7.45869 7.49527 7.52837 7.73237 7.84707 8.15681 9.12684 9.72294 10.36326 11.32485 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.003863 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.220549 B = 7246.729483 C = 7955.902557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.270 3.730 4 N -0.502 5.502 5 C 0.095 3.905 6 C 0.066 3.934 7 O -0.299 6.299 8 C 0.064 3.936 9 H 0.079 0.921 10 C -0.134 4.134 11 C 0.178 3.822 12 N -0.602 5.602 13 C -0.232 4.232 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.118 3.882 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.103 4.103 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.165 0.835 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.254 0.746 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.152 0.848 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.809 -10.157 -3.601 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.091 3.909 4 N -0.225 5.225 5 C -0.061 4.061 6 C 0.017 3.983 7 O -0.210 6.210 8 C 0.007 3.993 9 H 0.097 0.903 10 C -0.172 4.172 11 C 0.053 3.947 12 N -0.330 5.330 13 C -0.360 4.360 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.206 1.206 20 H -0.216 1.216 21 C -0.009 4.009 22 C -0.159 4.159 23 C -0.113 4.113 24 C -0.161 4.161 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.182 0.818 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.466 -10.217 -3.588 18.881 hybrid contribution 1.604 0.035 0.544 1.694 sum -13.863 -10.183 -3.044 17.468 Atomic orbital electron populations 1.22784 0.77814 1.02510 1.02244 1.86205 1.22290 1.24325 1.88834 1.19442 0.88806 0.84621 0.97993 1.67292 1.39700 0.98121 1.17363 1.21663 0.89963 0.94075 1.00449 1.19978 0.93645 0.85497 0.99164 1.86129 1.23669 1.23870 1.87374 1.23887 0.76156 1.00056 0.99158 0.90308 1.23020 0.99849 0.93755 1.00583 1.21219 0.88827 0.94217 0.90394 1.44341 1.06560 1.43311 1.38786 1.19057 0.87425 1.18365 1.11180 0.90286 1.24819 0.98021 0.98580 0.98805 1.69934 1.26890 1.27412 1.32632 0.86086 0.82392 0.77793 0.79281 1.21490 1.20611 1.21579 1.21975 0.88572 0.96776 0.93560 1.21701 1.01461 0.90741 1.02024 1.19753 0.91049 0.96486 1.04002 1.20625 0.98854 0.93772 1.02816 0.88983 0.92537 0.92590 0.81754 0.91272 0.91039 0.93194 0.92962 0.93576 0.93991 0.95176 0.83071 0.90822 0.90829 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.85 9.53 -19.00 -0.18 -4.03 16 3 C 0.27 3.78 7.47 -17.16 -0.13 3.66 16 4 N -0.50 -7.10 9.21 -13.21 -0.12 -7.23 16 5 C 0.10 1.32 11.13 -17.39 -0.19 1.12 16 6 C 0.07 0.99 6.65 -39.12 -0.26 0.73 16 7 O -0.30 -4.93 9.97 -19.72 -0.20 -5.12 16 8 C 0.06 1.14 2.83 -24.58 -0.07 1.07 16 9 H 0.08 1.34 6.63 -51.93 -0.34 1.00 16 10 C -0.13 -2.47 6.68 -24.89 -0.17 -2.63 16 11 C 0.18 4.20 5.37 -3.06 -0.02 4.19 16 12 N -0.60 -15.13 3.39 -170.06 -0.58 -15.71 16 13 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 16 N -0.92 -26.48 10.31 55.49 0.57 -25.90 16 17 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 C 0.12 2.44 6.62 -2.53 -0.02 2.42 16 22 C -0.13 -1.93 8.51 -39.17 -0.33 -2.26 16 23 C -0.11 -1.50 5.91 -104.34 -0.62 -2.11 16 24 C -0.10 -1.14 9.81 36.01 0.35 -0.79 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 28 H 0.17 1.91 8.06 -52.48 -0.42 1.48 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.30 7.52 -51.93 -0.39 0.91 16 32 H 0.05 1.34 7.37 -51.93 -0.38 0.96 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.04 0.83 7.30 -51.92 -0.38 0.45 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.15 2.18 5.48 -52.49 -0.29 1.89 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.76 7.54 -51.93 -0.39 0.36 16 39 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -30.32 321.47 -6.85 -37.18 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.52 Total: -0.77 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.65 Total: 0.05 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.13 Total: -48.84 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.38 Total: -9.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.32 -6.85 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228664383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.505 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds