Wall clock time and date at job start Tue Mar 31 2020 00:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35763 * 117.00075 * 2 1 4 4 N 1.32216 * 119.62211 * 359.97438 * 3 2 1 5 5 C 1.31953 * 121.70182 * 179.72606 * 4 3 2 6 6 C 1.38542 * 120.75447 * 0.58365 * 5 4 3 7 7 O 1.35992 * 120.41112 * 179.70044 * 6 5 4 8 8 C 1.42902 * 117.00316 * 184.98778 * 7 6 5 9 9 H 1.09003 * 110.88535 * 38.14331 * 8 7 6 10 10 C 1.55161 * 111.00711 * 162.07234 * 8 7 6 11 11 C 1.54336 * 103.02026 * 153.38159 * 10 8 7 12 12 N 1.47015 * 107.26697 * 338.13984 * 11 10 8 13 13 C 1.36939 * 125.65118 * 178.84922 * 12 11 10 14 14 H 1.07993 * 120.00037 * 179.68944 * 13 12 11 15 15 C 1.38814 * 119.99379 * 359.69462 * 13 12 11 16 16 N 1.31614 * 120.00451 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99604 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47094 * 270.00105 * 17 15 13 19 19 H 1.48504 * 109.47079 * 29.99742 * 17 15 13 20 20 H 1.48504 * 109.46960 * 149.99627 * 17 15 13 21 21 C 1.47428 * 108.70262 * 358.58485 * 12 11 10 22 22 C 1.39186 * 119.17958 * 359.43528 * 6 5 4 23 23 C 1.38403 * 118.43813 * 0.26708 * 22 6 5 24 24 C 1.50700 * 120.41509 * 180.02562 * 23 22 6 25 25 H 1.09003 * 109.46670 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46995 * 299.99530 * 1 2 3 27 27 H 1.08992 * 109.46953 * 60.00065 * 1 2 3 28 28 H 1.08006 * 119.62366 * 180.31264 * 5 4 3 29 29 H 1.09003 * 110.71593 * 271.93591 * 10 8 7 30 30 H 1.09000 * 110.71937 * 35.03432 * 10 8 7 31 31 H 1.09000 * 109.98753 * 218.66296 * 11 10 8 32 32 H 1.09004 * 109.77778 * 97.49865 * 11 10 8 33 33 H 0.96995 * 120.00471 * 180.02562 * 16 15 13 34 34 H 1.09011 * 110.36756 * 143.19416 * 21 12 11 35 35 H 1.08994 * 110.36960 * 265.40594 * 21 12 11 36 36 H 1.08000 * 120.78190 * 180.25442 * 22 6 5 37 37 H 1.09004 * 109.46849 * 90.00500 * 24 23 22 38 38 H 1.08997 * 109.47202 * 210.00345 * 24 23 22 39 39 H 1.09005 * 109.47306 * 330.00675 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3180 2.3137 -0.0005 5 6 1.8740 3.5104 0.0048 6 6 3.2522 3.6513 -0.0009 7 8 3.8178 4.8880 -0.0015 8 6 5.2407 4.9507 -0.1182 9 1 5.6077 4.1918 -0.8093 10 6 5.7014 6.3677 -0.5509 11 6 7.1302 6.4599 0.0253 12 7 7.2241 5.4806 1.1178 13 6 8.3385 5.2333 1.8743 14 1 8.3041 4.4938 2.6606 15 6 9.5121 5.9333 1.6305 16 7 9.5541 6.8343 0.6720 17 14 11.0320 5.5966 2.6630 18 1 11.0353 6.4937 3.8463 19 1 11.0202 4.1819 3.1146 20 1 12.2487 5.8462 1.8490 21 6 5.9181 4.8133 1.2681 22 6 4.0509 2.5113 -0.0005 23 6 3.4323 1.2732 0.0001 24 6 4.2539 0.0099 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.2475 4.3902 0.0093 29 1 5.7150 6.4537 -1.6375 30 1 5.0598 7.1323 -0.1129 31 1 7.3127 7.4633 0.4101 32 1 7.8571 6.2204 -0.7509 33 1 10.3743 7.3232 0.5014 34 1 6.0561 3.7618 1.5204 35 1 5.3235 5.3114 2.0338 36 1 5.1279 2.5911 -0.0007 37 1 4.4516 -0.2941 1.0291 38 1 3.7062 -0.7802 -0.5124 39 1 5.1984 0.1902 -0.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228664383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:43 Heat of formation + Delta-G solvation = -30.531830 kcal Electronic energy + Delta-G solvation = -21542.657563 eV Core-core repulsion = 18258.289351 eV Total energy + Delta-G solvation = -3284.368212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99861 -40.43802 -38.75726 -37.60519 -34.77773 -34.30270 -31.62814 -30.79003 -29.35082 -28.50103 -27.80587 -26.47666 -24.18932 -23.29393 -22.06755 -21.77732 -19.40087 -19.03975 -18.83920 -18.28270 -17.09878 -16.79841 -16.44710 -16.03991 -15.65886 -15.39340 -15.22057 -14.59826 -14.41909 -14.35661 -14.15184 -13.90445 -13.83180 -13.49825 -13.25592 -12.93810 -12.88172 -12.69176 -12.53301 -12.17508 -12.12923 -12.04226 -11.84468 -11.61830 -11.45334 -10.80663 -10.73539 -10.51951 -8.99873 -8.90737 -7.88199 -5.25527 0.01986 0.22229 1.47121 1.48658 1.57360 1.94566 2.24541 2.49381 2.65124 3.30680 3.32423 3.53379 3.61190 3.76367 3.84141 3.90126 3.97931 4.03060 4.33953 4.47843 4.49480 4.52801 4.60396 4.62440 4.75294 4.77503 4.82027 4.84433 4.94750 5.05176 5.08934 5.16061 5.34492 5.41585 5.58646 5.70166 6.06910 6.15682 6.36576 6.76252 7.05755 7.70525 8.33850 9.22074 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.003863 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.220549 B = 7246.729483 C = 7955.902557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.314 6.314 3 C 0.265 3.735 4 N -0.509 5.509 5 C 0.099 3.901 6 C 0.045 3.955 7 O -0.300 6.300 8 C 0.084 3.916 9 H 0.090 0.910 10 C -0.121 4.121 11 C 0.185 3.815 12 N -0.623 5.623 13 C -0.248 4.248 14 H 0.083 0.917 15 C -0.061 4.061 16 N -0.949 5.949 17 Si 0.980 3.020 18 H -0.287 1.287 19 H -0.268 1.268 20 H -0.292 1.292 21 C 0.116 3.884 22 C -0.137 4.137 23 C -0.117 4.117 24 C -0.101 4.101 25 H 0.123 0.877 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.186 0.814 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.249 0.751 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -11.684 -3.605 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.086 3.914 4 N -0.232 5.232 5 C -0.058 4.058 6 C -0.002 4.002 7 O -0.212 6.212 8 C 0.026 3.974 9 H 0.107 0.893 10 C -0.159 4.159 11 C 0.060 3.940 12 N -0.351 5.351 13 C -0.376 4.376 14 H 0.101 0.899 15 C -0.254 4.254 16 N -0.597 5.597 17 Si 0.808 3.192 18 H -0.214 1.214 19 H -0.192 1.192 20 H -0.219 1.219 21 C -0.009 4.009 22 C -0.163 4.163 23 C -0.120 4.120 24 C -0.158 4.158 25 H 0.141 0.859 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.202 0.798 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.678 -11.777 -3.586 20.729 hybrid contribution 1.832 0.419 0.570 1.964 sum -14.846 -11.358 -3.016 18.934 Atomic orbital electron populations 1.23040 0.76106 1.04574 1.02094 1.86207 1.23987 1.23527 1.88475 1.19703 0.89229 0.85109 0.97322 1.67364 1.39783 0.98269 1.17766 1.21988 0.89749 0.94712 0.99329 1.20127 0.94212 0.85038 1.00841 1.86100 1.22347 1.24814 1.87920 1.23515 0.77028 0.99667 0.97148 0.89265 1.22840 0.96422 0.94650 1.01957 1.20965 0.91546 0.92125 0.89347 1.44613 1.07566 1.44063 1.38831 1.19438 0.88482 1.18226 1.11483 0.89892 1.25653 1.00900 0.98704 1.00170 1.70142 1.27176 1.28322 1.34088 0.85063 0.78536 0.78122 0.77498 1.21394 1.19235 1.21873 1.22073 0.86913 0.96568 0.95388 1.21740 1.01364 0.91081 1.02092 1.20011 0.91373 0.97080 1.03497 1.20669 0.98899 0.92831 1.03446 0.85905 0.92756 0.92622 0.79752 0.88615 0.90194 0.96646 0.95729 0.94147 0.93216 0.95795 0.83301 0.90161 0.90035 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 113.37 1.18 1.77 16 2 O -0.31 -7.18 9.53 -90.90 -0.87 -8.05 16 3 C 0.27 6.95 7.47 84.78 0.63 7.58 16 4 N -0.51 -13.47 9.21 -308.55 -2.84 -16.31 16 5 C 0.10 2.55 11.13 84.75 0.94 3.49 16 6 C 0.05 1.30 6.65 22.57 0.15 1.45 16 7 O -0.30 -9.37 9.97 -93.46 -0.93 -10.30 16 8 C 0.08 2.86 2.83 31.99 0.09 2.95 16 9 H 0.09 2.89 6.63 -2.39 -0.02 2.88 16 10 C -0.12 -4.33 6.68 31.79 0.21 -4.12 16 11 C 0.19 8.93 5.37 86.73 0.47 9.39 16 12 N -0.62 -31.66 3.39 -691.96 -2.35 -34.01 16 13 C -0.25 -13.71 10.28 84.03 0.86 -12.85 16 14 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 15 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 16 N -0.95 -55.93 10.31 21.65 0.22 -55.71 16 17 Si 0.98 44.97 29.55 68.60 2.03 47.00 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 C 0.12 4.76 6.62 86.85 0.58 5.34 16 22 C -0.14 -3.76 8.51 22.54 0.19 -3.57 16 23 C -0.12 -2.98 5.91 -19.68 -0.12 -3.09 16 24 C -0.10 -2.04 9.81 71.24 0.70 -1.34 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 27 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 28 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 31 H 0.02 0.83 7.52 -2.39 -0.02 0.81 16 32 H 0.02 1.30 7.37 -2.39 -0.02 1.28 16 33 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.05 1.94 7.30 -2.38 -0.02 1.92 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.15 4.11 5.48 -2.91 -0.02 4.09 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.50 7.54 -2.39 -0.02 1.48 16 39 H 0.08 1.44 8.09 -2.38 -0.02 1.42 16 Total: -1.00 -65.22 321.47 2.66 -62.56 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.05 Total: 10.76 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.35 Total: 4.06 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.97 Total: -106.03 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.80 Total: -18.35 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.22 2.66 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228664383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.029 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds