Wall clock time and date at job start Tue Mar 31 2020 00:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35764 * 117.00117 * 2 1 4 4 C 1.38886 * 119.63029 * 179.97438 * 3 2 1 5 5 C 1.38356 * 119.17069 * 179.70262 * 4 3 2 6 6 C 1.50702 * 120.78148 * 180.31960 * 5 4 3 7 7 C 1.39226 * 118.43905 * 0.57850 * 5 4 3 8 8 O 1.35998 * 120.40864 * 179.70793 * 7 5 4 9 9 C 1.42899 * 116.99849 * 174.00093 * 8 7 5 10 10 H 1.08999 * 110.88891 * 327.61267 * 9 8 7 11 11 C 1.55160 * 111.00697 * 203.72833 * 9 8 7 12 12 C 1.54325 * 102.94511 * 206.38774 * 11 9 8 13 13 N 1.47027 * 107.26873 * 22.19076 * 12 11 9 14 14 C 1.36941 * 125.64577 * 181.01436 * 13 12 11 15 15 H 1.07995 * 119.99575 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99954 * 0.02562 * 14 13 12 17 17 N 1.31626 * 119.99955 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47142 * 90.00119 * 18 16 14 20 20 H 1.48495 * 109.47226 * 210.00535 * 18 16 14 21 21 H 1.48500 * 109.46862 * 330.00385 * 18 16 14 22 22 C 1.47423 * 108.70583 * 1.06099 * 13 12 11 23 23 C 1.38509 * 119.17905 * 359.44404 * 7 5 4 24 24 N 1.31975 * 120.75860 * 0.27417 * 23 7 5 25 25 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47139 * 299.99883 * 1 2 3 27 27 H 1.09002 * 109.47280 * 59.99939 * 1 2 3 28 28 H 1.08006 * 120.41057 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47095 * 270.26950 * 6 5 4 30 30 H 1.09004 * 109.46896 * 30.26993 * 6 5 4 31 31 H 1.09000 * 109.47031 * 150.26951 * 6 5 4 32 32 H 1.09004 * 110.71578 * 88.02218 * 11 9 8 33 33 H 1.09002 * 110.71652 * 324.75066 * 11 9 8 34 34 H 1.08994 * 109.87824 * 141.60608 * 12 11 9 35 35 H 1.08996 * 109.88240 * 262.77819 * 12 11 9 36 36 H 0.96996 * 119.99602 * 179.97438 * 17 16 14 37 37 H 1.08998 * 110.36990 * 217.03500 * 22 13 12 38 38 H 1.09000 * 110.36623 * 94.70683 * 22 13 12 39 39 H 1.07998 * 119.61922 * 180.24755 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.4328 1.2734 0.0005 5 6 4.0510 2.5111 -0.0057 6 6 5.5539 2.6225 -0.0126 7 6 3.2521 3.6513 0.0000 8 8 3.8177 4.8881 0.0001 9 6 2.9353 6.0049 -0.1269 10 1 2.0730 5.7508 -0.7433 11 6 3.6809 7.2409 -0.6961 12 6 2.8618 8.4249 -0.1404 13 7 2.1398 7.9383 1.0444 14 6 1.2842 8.6774 1.8169 15 1 0.8010 8.2259 2.6708 16 6 1.0378 10.0068 1.5025 17 7 1.6263 10.5568 0.4615 18 14 -0.1288 11.0152 2.5567 19 1 0.6335 11.6731 3.6481 20 1 -0.7850 12.0500 1.7178 21 1 -1.1624 10.1241 3.1423 22 6 2.4905 6.5232 1.2635 23 6 1.8742 3.5104 -0.0001 24 7 1.3181 2.3136 0.0000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0216 0.3680 0.0005 29 1 5.9211 2.6475 1.0134 30 1 5.9796 1.7627 -0.5300 31 1 5.8480 3.5378 -0.5262 32 1 3.6603 7.2355 -1.7860 33 1 4.7066 7.2754 -0.3288 34 1 3.5304 9.2384 0.1412 35 1 2.1514 8.7693 -0.8918 36 1 1.4539 11.4856 0.2416 37 1 1.6215 5.9671 1.6154 38 1 3.3092 6.4416 1.9785 39 1 1.2477 4.3901 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228676969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:38 Heat of formation + Delta-G solvation = -9.554861 kcal Electronic energy + Delta-G solvation = -21561.109578 eV Core-core repulsion = 18277.650996 eV Total energy + Delta-G solvation = -3283.458582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90431 -39.15918 -37.55780 -36.10272 -33.82677 -32.29328 -30.11292 -29.26191 -27.86756 -27.49254 -26.87176 -24.69684 -23.22970 -21.93149 -20.48421 -20.15246 -17.96504 -17.89714 -17.40696 -16.71649 -16.06554 -15.17770 -14.85899 -14.75839 -14.49290 -14.14347 -13.91565 -13.36749 -13.32397 -12.92568 -12.77913 -12.65661 -12.33957 -12.08992 -12.05306 -11.81080 -11.67356 -11.08120 -11.00176 -10.84514 -10.38070 -10.28167 -10.11672 -9.99612 -9.76594 -9.51458 -9.40057 -8.66625 -7.87767 -6.92895 -5.77798 -3.12615 1.06810 1.32969 3.06356 3.33474 3.38201 3.43476 3.45105 3.72901 4.34863 4.45476 4.60194 4.90041 4.95838 5.16310 5.19991 5.25267 5.25504 5.32124 5.48621 5.48937 5.53968 5.57055 5.60231 5.64875 5.78586 5.82978 6.08551 6.19830 6.26043 6.37361 6.40454 6.51245 6.60974 7.17997 7.47347 7.50608 7.55260 7.75013 7.85017 8.17162 9.14272 9.73846 10.37747 11.33956 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.004056 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.042562 B = 6901.987230 C = 7782.758522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.313 6.313 3 C 0.277 3.723 4 C -0.156 4.156 5 C -0.046 4.046 6 C -0.105 4.105 7 C 0.057 3.943 8 O -0.296 6.296 9 C 0.062 3.938 10 H 0.080 0.920 11 C -0.135 4.135 12 C 0.178 3.822 13 N -0.602 5.602 14 C -0.232 4.232 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.120 3.880 23 C 0.059 3.941 24 N -0.508 5.508 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.144 0.856 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.254 0.746 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -17.788 -3.229 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.221 6.221 3 C 0.098 3.902 4 C -0.177 4.177 5 C -0.054 4.054 6 C -0.162 4.162 7 C 0.009 3.991 8 O -0.207 6.207 9 C 0.005 3.995 10 H 0.098 0.902 11 C -0.173 4.173 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.359 4.359 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.007 4.007 23 C -0.097 4.097 24 N -0.232 5.232 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.349 -17.823 -3.218 18.418 hybrid contribution -0.321 0.835 0.537 1.044 sum 3.027 -16.988 -2.681 17.462 Atomic orbital electron populations 1.22797 0.77581 1.02517 1.02474 1.86197 1.22581 1.24476 1.88810 1.19648 0.89226 0.84671 0.96635 1.20724 0.91808 0.98044 1.07093 1.19511 0.97000 0.89572 0.99322 1.20649 0.89133 1.03374 1.03041 1.19718 0.92378 0.86525 1.00508 1.86119 1.36130 1.11186 1.87293 1.23925 0.92523 0.83816 0.99243 0.90182 1.23035 1.00305 0.94008 0.99942 1.21213 0.93484 0.91075 0.88877 1.44339 1.52071 1.05405 1.31191 1.19062 1.17943 0.92296 1.06645 0.90278 1.24813 1.00294 0.96858 0.98253 1.69941 1.46146 1.12939 1.27890 0.86084 0.80272 0.79930 0.79272 1.21504 1.21585 1.20615 1.21924 0.97810 0.87600 0.93345 1.22703 0.91914 0.94727 1.00350 1.67171 1.40497 0.98266 1.17277 0.88950 0.92403 0.92474 0.83811 0.90506 0.91220 0.90238 0.91336 0.91056 0.93180 0.93016 0.93606 0.93942 0.95127 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.01 10.48 -19.00 -0.20 -4.21 16 3 C 0.28 3.92 7.49 -17.16 -0.13 3.79 16 4 C -0.16 -1.94 9.74 -39.30 -0.38 -2.32 16 5 C -0.05 -0.59 5.93 -104.21 -0.62 -1.21 16 6 C -0.11 -1.07 9.85 36.01 0.35 -0.72 16 7 C 0.06 0.86 6.67 -39.11 -0.26 0.60 16 8 O -0.30 -4.81 9.13 -19.73 -0.18 -4.99 16 9 C 0.06 1.09 2.81 -24.58 -0.07 1.02 16 10 H 0.08 1.37 6.27 -51.93 -0.33 1.04 16 11 C -0.13 -2.47 6.69 -24.89 -0.17 -2.64 16 12 C 0.18 4.21 5.37 -3.06 -0.02 4.19 16 13 N -0.60 -15.20 3.39 -170.07 -0.58 -15.78 16 14 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 17 N -0.92 -26.58 10.31 55.49 0.57 -26.01 16 18 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.12 2.49 6.87 -2.53 -0.02 2.48 16 23 C 0.06 0.91 10.12 -17.39 -0.18 0.74 16 24 N -0.51 -7.82 9.21 -13.21 -0.12 -7.95 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.08 0.86 7.62 -51.93 -0.40 0.47 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 35 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.04 0.86 7.80 -51.93 -0.41 0.45 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.17 2.58 5.66 -52.49 -0.30 2.28 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -30.61 322.52 -6.89 -37.50 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.54 Total: -0.87 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.68 Total: 0.60 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.13 Total: -49.74 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.38 Total: -9.20 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.61 -6.89 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228676969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.944 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds