Wall clock time and date at job start Tue Mar 31 2020 00:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35764 * 117.00117 * 2 1 4 4 C 1.38886 * 119.63029 * 179.97438 * 3 2 1 5 5 C 1.38356 * 119.17069 * 179.70262 * 4 3 2 6 6 C 1.50702 * 120.78148 * 180.31960 * 5 4 3 7 7 C 1.39226 * 118.43905 * 0.57850 * 5 4 3 8 8 O 1.35998 * 120.40864 * 179.70793 * 7 5 4 9 9 C 1.42899 * 116.99849 * 174.00093 * 8 7 5 10 10 H 1.08999 * 110.88891 * 327.61267 * 9 8 7 11 11 C 1.55160 * 111.00697 * 203.72833 * 9 8 7 12 12 C 1.54325 * 102.94511 * 206.38774 * 11 9 8 13 13 N 1.47027 * 107.26873 * 22.19076 * 12 11 9 14 14 C 1.36941 * 125.64577 * 181.01436 * 13 12 11 15 15 H 1.07995 * 119.99575 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99954 * 0.02562 * 14 13 12 17 17 N 1.31626 * 119.99955 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47142 * 90.00119 * 18 16 14 20 20 H 1.48495 * 109.47226 * 210.00535 * 18 16 14 21 21 H 1.48500 * 109.46862 * 330.00385 * 18 16 14 22 22 C 1.47423 * 108.70583 * 1.06099 * 13 12 11 23 23 C 1.38509 * 119.17905 * 359.44404 * 7 5 4 24 24 N 1.31975 * 120.75860 * 0.27417 * 23 7 5 25 25 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47139 * 299.99883 * 1 2 3 27 27 H 1.09002 * 109.47280 * 59.99939 * 1 2 3 28 28 H 1.08006 * 120.41057 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47095 * 270.26950 * 6 5 4 30 30 H 1.09004 * 109.46896 * 30.26993 * 6 5 4 31 31 H 1.09000 * 109.47031 * 150.26951 * 6 5 4 32 32 H 1.09004 * 110.71578 * 88.02218 * 11 9 8 33 33 H 1.09002 * 110.71652 * 324.75066 * 11 9 8 34 34 H 1.08994 * 109.87824 * 141.60608 * 12 11 9 35 35 H 1.08996 * 109.88240 * 262.77819 * 12 11 9 36 36 H 0.96996 * 119.99602 * 179.97438 * 17 16 14 37 37 H 1.08998 * 110.36990 * 217.03500 * 22 13 12 38 38 H 1.09000 * 110.36623 * 94.70683 * 22 13 12 39 39 H 1.07998 * 119.61922 * 180.24755 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.4328 1.2734 0.0005 5 6 4.0510 2.5111 -0.0057 6 6 5.5539 2.6225 -0.0126 7 6 3.2521 3.6513 0.0000 8 8 3.8177 4.8881 0.0001 9 6 2.9353 6.0049 -0.1269 10 1 2.0730 5.7508 -0.7433 11 6 3.6809 7.2409 -0.6961 12 6 2.8618 8.4249 -0.1404 13 7 2.1398 7.9383 1.0444 14 6 1.2842 8.6774 1.8169 15 1 0.8010 8.2259 2.6708 16 6 1.0378 10.0068 1.5025 17 7 1.6263 10.5568 0.4615 18 14 -0.1288 11.0152 2.5567 19 1 0.6335 11.6731 3.6481 20 1 -0.7850 12.0500 1.7178 21 1 -1.1624 10.1241 3.1423 22 6 2.4905 6.5232 1.2635 23 6 1.8742 3.5104 -0.0001 24 7 1.3181 2.3136 0.0000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0216 0.3680 0.0005 29 1 5.9211 2.6475 1.0134 30 1 5.9796 1.7627 -0.5300 31 1 5.8480 3.5378 -0.5262 32 1 3.6603 7.2355 -1.7860 33 1 4.7066 7.2754 -0.3288 34 1 3.5304 9.2384 0.1412 35 1 2.1514 8.7693 -0.8918 36 1 1.4539 11.4856 0.2416 37 1 1.6215 5.9671 1.6154 38 1 3.3092 6.4416 1.9785 39 1 1.2477 4.3901 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228676969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:37 Heat of formation + Delta-G solvation = -29.929231 kcal Electronic energy + Delta-G solvation = -21561.993077 eV Core-core repulsion = 18277.650996 eV Total energy + Delta-G solvation = -3284.342081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01351 -40.39015 -38.84348 -37.57675 -34.91214 -34.18731 -31.44572 -30.81301 -29.18718 -28.85657 -27.71732 -26.58843 -24.48888 -22.98309 -22.15881 -21.77288 -19.22810 -19.07549 -18.89962 -18.13275 -17.07929 -16.78867 -16.48829 -16.01714 -15.75792 -15.56171 -15.28453 -14.62027 -14.36525 -14.25084 -14.08658 -13.87870 -13.69397 -13.63797 -13.29490 -12.95236 -12.87213 -12.71184 -12.64411 -12.16885 -12.14669 -12.04968 -11.84979 -11.65766 -11.49610 -10.74377 -10.64303 -10.40452 -9.04223 -8.95475 -7.88770 -5.25997 0.01834 0.23784 1.46316 1.47889 1.56650 1.98359 2.19073 2.48989 2.64215 3.26900 3.30664 3.50659 3.59858 3.70422 3.90194 3.94642 4.01680 4.05683 4.37845 4.43771 4.45803 4.52505 4.58081 4.65361 4.75021 4.77339 4.83499 4.84504 4.91124 4.96409 5.04179 5.28101 5.40495 5.42296 5.58705 5.69852 6.09493 6.16028 6.33733 6.76120 7.05514 7.70063 8.33287 9.21457 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.004056 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.042562 B = 6901.987230 C = 7782.758522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.316 6.316 3 C 0.269 3.731 4 C -0.149 4.149 5 C -0.039 4.039 6 C -0.104 4.104 7 C 0.036 3.964 8 O -0.293 6.293 9 C 0.082 3.918 10 H 0.087 0.913 11 C -0.120 4.120 12 C 0.185 3.815 13 N -0.623 5.623 14 C -0.249 4.249 15 H 0.082 0.918 16 C -0.060 4.060 17 N -0.948 5.948 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.270 1.270 22 C 0.119 3.881 23 C 0.046 3.954 24 N -0.528 5.528 25 H 0.126 0.874 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.177 0.823 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.017 0.983 35 H 0.023 0.977 36 H 0.249 0.751 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -20.038 -3.188 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.089 3.911 4 C -0.170 4.170 5 C -0.047 4.047 6 C -0.161 4.161 7 C -0.012 4.012 8 O -0.205 6.205 9 C 0.024 3.976 10 H 0.105 0.895 11 C -0.158 4.158 12 C 0.060 3.940 13 N -0.351 5.351 14 C -0.377 4.377 15 H 0.099 0.901 16 C -0.253 4.253 17 N -0.597 5.597 18 Si 0.808 3.192 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.195 1.195 22 C -0.007 4.007 23 C -0.109 4.109 24 N -0.253 5.253 25 H 0.144 0.856 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.035 0.965 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.020 -20.113 -3.171 20.754 hybrid contribution -0.534 1.376 0.550 1.575 sum 3.486 -18.737 -2.620 19.237 Atomic orbital electron populations 1.23004 0.76307 1.04560 1.01841 1.86204 1.23874 1.23749 1.88556 1.20038 0.90166 0.84719 0.96156 1.21086 0.91349 0.99000 1.05520 1.19894 0.98431 0.88858 0.97566 1.20746 0.87011 1.04374 1.03944 1.19916 0.92619 0.86521 1.02109 1.86094 1.35347 1.11285 1.87800 1.23516 0.92792 0.84302 0.96955 0.89508 1.22849 0.99756 0.91860 1.01319 1.20964 0.92600 0.92515 0.87886 1.44611 1.51916 1.07237 1.31366 1.19430 1.18258 0.92974 1.07058 0.90063 1.25643 1.02103 0.97945 0.99628 1.70149 1.47399 1.12809 1.29319 0.85065 0.78403 0.78217 0.77548 1.21221 1.21788 1.19454 1.22009 0.97741 0.85602 0.95371 1.22596 0.92193 0.94723 1.01360 1.67124 1.41245 0.98600 1.18311 0.85603 0.93164 0.92983 0.80603 0.89555 0.88382 0.90913 0.88707 0.89963 0.96497 0.95907 0.94132 0.93721 0.95449 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.38 113.37 1.18 1.88 16 2 O -0.32 -7.44 10.48 -90.91 -0.95 -8.39 16 3 C 0.27 7.12 7.49 84.79 0.63 7.75 16 4 C -0.15 -3.27 9.74 22.45 0.22 -3.05 16 5 C -0.04 -0.92 5.93 -19.60 -0.12 -1.03 16 6 C -0.10 -1.77 9.85 71.24 0.70 -1.07 16 7 C 0.04 1.04 6.67 22.57 0.15 1.19 16 8 O -0.29 -9.13 9.13 -93.53 -0.85 -9.99 16 9 C 0.08 2.83 2.81 31.99 0.09 2.92 16 10 H 0.09 2.92 6.27 -2.39 -0.01 2.91 16 11 C -0.12 -4.31 6.69 31.78 0.21 -4.10 16 12 C 0.19 9.00 5.37 86.73 0.47 9.47 16 13 N -0.62 -32.17 3.39 -691.98 -2.35 -34.52 16 14 C -0.25 -13.99 10.28 84.03 0.86 -13.12 16 15 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 16 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 17 N -0.95 -56.31 10.31 21.65 0.22 -56.09 16 18 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.12 4.96 6.87 86.86 0.60 5.55 16 23 C 0.05 1.41 10.12 84.74 0.86 2.27 16 24 N -0.53 -15.90 9.21 -308.56 -2.84 -18.74 16 25 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 28 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.12 8.10 -2.38 -0.02 1.10 16 31 H 0.07 1.37 7.62 -2.39 -0.02 1.35 16 32 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.02 0.92 7.51 -2.39 -0.02 0.90 16 35 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.04 1.83 7.80 -2.39 -0.02 1.81 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.16 4.95 5.66 -2.91 -0.02 4.93 16 Total: -1.00 -67.07 322.52 2.62 -64.45 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.04 Total: 9.97 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.32 Total: 5.74 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -4.97 Total: -109.35 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.81 Total: -18.38 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.07 2.62 -64.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228676969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.523 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds