Wall clock time and date at job start Tue Mar 31 2020 00:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35766 * 116.99960 * 2 1 4 4 C 1.38888 * 119.62359 * 180.02562 * 3 2 1 5 5 C 1.38366 * 119.16662 * 179.70063 * 4 3 2 6 6 C 1.50703 * 120.78147 * 180.27468 * 5 4 3 7 7 C 1.39230 * 118.43701 * 0.53933 * 5 4 3 8 8 O 1.35998 * 120.40631 * 179.73386 * 7 5 4 9 9 C 1.42903 * 116.99674 * 173.70201 * 8 7 5 10 10 C 1.53514 * 114.16696 * 201.84325 * 9 8 7 11 11 N 1.47474 * 87.93318 * 220.33085 * 10 9 8 12 12 C 1.46898 * 110.99951 * 138.70933 * 11 10 9 13 13 C 1.50702 * 109.47291 * 170.00010 * 12 11 10 14 14 H 1.08002 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00201 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99855 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00161 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46830 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46894 * 120.00119 * 17 15 13 20 20 H 1.48493 * 109.47128 * 240.00408 * 17 15 13 21 21 C 1.47479 * 87.83799 * 27.01342 * 11 10 9 22 22 C 1.38508 * 119.18136 * 359.46009 * 7 5 4 23 23 N 1.31976 * 120.75667 * 0.27279 * 22 7 5 24 24 H 1.08999 * 109.47053 * 299.99444 * 1 2 3 25 25 H 1.08996 * 109.47344 * 59.99858 * 1 2 3 26 26 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.41823 * 359.97438 * 4 3 2 28 28 H 1.09009 * 109.46801 * 270.26975 * 6 5 4 29 29 H 1.09004 * 109.46611 * 30.26514 * 6 5 4 30 30 H 1.08990 * 109.47052 * 150.26950 * 6 5 4 31 31 H 1.08994 * 113.25944 * 334.79724 * 9 8 7 32 32 H 1.09012 * 113.46919 * 105.56430 * 10 9 8 33 33 H 1.08994 * 113.53648 * 335.10895 * 10 9 8 34 34 H 1.08998 * 109.47024 * 289.99992 * 12 11 10 35 35 H 1.08997 * 109.47292 * 49.99679 * 12 11 10 36 36 H 0.97003 * 120.00197 * 180.02562 * 16 15 13 37 37 H 1.09003 * 113.47668 * 87.75450 * 21 11 10 38 38 H 1.09002 * 113.47597 * 218.22451 * 21 11 10 39 39 H 1.07998 * 119.61581 * 180.29983 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4327 1.2733 -0.0005 5 6 4.0510 2.5111 -0.0068 6 6 5.5539 2.6224 -0.0139 7 6 3.2521 3.6513 -0.0009 8 8 3.8177 4.8881 -0.0013 9 6 2.9358 6.0047 -0.1347 10 6 3.6130 7.2823 -0.6503 11 7 2.8004 8.0403 0.3192 12 6 3.5964 9.0931 0.9641 13 6 2.6868 9.9967 1.7561 14 1 1.6237 9.8074 1.7786 15 6 3.2118 11.0643 2.4529 16 7 4.5063 11.2944 2.4260 17 14 2.0842 12.1847 3.4341 18 1 0.6819 11.7142 3.3021 19 1 2.4823 12.1579 4.8645 20 1 2.1921 13.5721 2.9161 21 6 2.7597 6.8236 1.1517 22 6 1.8742 3.5105 -0.0004 23 7 1.3181 2.3136 0.0000 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0216 0.3679 -0.0005 28 1 5.9212 2.6474 1.0122 29 1 5.9795 1.7626 -0.5313 30 1 5.8480 3.5377 -0.5274 31 1 2.0030 5.7582 -0.6417 32 1 3.3749 7.5109 -1.6892 33 1 4.6827 7.3213 -0.4446 34 1 4.3278 8.6380 1.6319 35 1 4.1136 9.6759 0.2019 36 1 4.8758 12.0452 2.9165 37 1 3.6016 6.7393 1.8389 38 1 1.7984 6.6636 1.6401 39 1 1.2478 4.3902 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228677360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:45 Heat of formation + Delta-G solvation = 3.346214 kcal Electronic energy + Delta-G solvation = -21034.844299 eV Core-core repulsion = 17751.945149 eV Total energy + Delta-G solvation = -3282.899150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07785 -39.82813 -38.35182 -36.64388 -33.92524 -32.89847 -30.24725 -29.28351 -27.98873 -26.97032 -25.73423 -25.37028 -23.55377 -22.05334 -21.51397 -19.62727 -18.18816 -18.03661 -17.31853 -16.35871 -16.18725 -15.45998 -15.14075 -15.06409 -14.59593 -14.35390 -14.05417 -13.87747 -13.45744 -13.01039 -12.93879 -12.78202 -12.40552 -12.21184 -12.18329 -12.03056 -11.87624 -11.46170 -11.19589 -10.99432 -10.62488 -10.36158 -10.11918 -9.86618 -9.67987 -9.50066 -9.28166 -8.49516 -8.07372 -7.99434 -6.08454 -4.10071 0.94710 1.20132 2.95193 3.18737 3.28585 3.35957 3.41540 3.60026 4.19282 4.38913 4.45911 4.59551 4.77227 4.81683 4.89616 5.04665 5.11441 5.15706 5.22065 5.27202 5.40393 5.45349 5.51121 5.59806 5.71519 5.75191 5.90662 6.01091 6.08304 6.17694 6.23517 6.24839 6.44757 7.05493 7.09257 7.38530 7.55653 7.71610 7.76511 8.01233 8.36078 8.97389 9.54401 11.02683 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.003257 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.670011 B = 8594.613599 C = 9180.496244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.280 3.720 4 C -0.155 4.155 5 C -0.043 4.043 6 C -0.107 4.107 7 C 0.054 3.946 8 O -0.292 6.292 9 C 0.039 3.961 10 C 0.005 3.995 11 N -0.460 5.460 12 C 0.161 3.839 13 C -0.506 4.506 14 H 0.065 0.935 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.004 4.004 22 C 0.058 3.942 23 N -0.509 5.509 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.007 0.993 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -20.957 -5.977 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.101 3.899 4 C -0.176 4.176 5 C -0.051 4.051 6 C -0.164 4.164 7 C 0.006 3.994 8 O -0.204 6.204 9 C -0.017 4.017 10 C -0.124 4.124 11 N -0.185 5.185 12 C 0.035 3.965 13 C -0.545 4.545 14 H 0.083 0.917 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.133 4.133 22 C -0.098 4.098 23 N -0.233 5.233 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.163 0.837 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.140 -20.720 -6.087 21.823 hybrid contribution 0.639 0.694 0.913 1.313 sum -2.501 -20.026 -5.174 20.835 Atomic orbital electron populations 1.22805 0.77515 1.02623 1.02428 1.86210 1.22632 1.24408 1.88715 1.19650 0.89234 0.84657 0.96388 1.20757 0.91832 0.98119 1.06850 1.19551 0.97094 0.89574 0.98896 1.20671 0.89032 1.03495 1.03183 1.19711 0.92444 0.86433 1.00818 1.86207 1.35959 1.11221 1.87016 1.24567 0.94085 0.83073 0.99978 1.24026 0.98442 0.90009 0.99923 1.69036 1.37671 1.03482 1.08266 1.20295 0.92537 0.89663 0.94017 1.21114 0.94384 1.10583 1.28411 0.91716 1.25009 0.95168 0.97715 0.96820 1.69961 1.11162 1.29965 1.42773 0.86404 0.80902 0.80377 0.79547 1.19589 1.21044 1.20945 1.24298 1.02725 0.91032 0.95255 1.22611 0.91755 0.94730 1.00674 1.67158 1.40482 0.98256 1.17409 0.92401 0.92461 0.88877 0.83698 0.90383 0.91097 0.90186 0.87556 0.89635 0.90812 0.97550 0.95012 0.92880 0.90612 0.90009 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.65 10.48 -19.01 -0.20 -3.85 16 3 C 0.28 3.59 7.49 -17.16 -0.13 3.47 16 4 C -0.16 -1.76 9.74 -39.29 -0.38 -2.14 16 5 C -0.04 -0.51 5.93 -104.20 -0.62 -1.13 16 6 C -0.11 -1.03 9.85 36.01 0.35 -0.67 16 7 C 0.05 0.73 6.67 -39.11 -0.26 0.47 16 8 O -0.29 -4.29 9.36 -19.74 -0.18 -4.48 16 9 C 0.04 0.59 4.03 -26.20 -0.11 0.49 16 10 C 0.01 0.09 7.52 -7.55 -0.06 0.03 16 11 N -0.46 -9.68 6.32 -246.12 -1.55 -11.24 16 12 C 0.16 4.13 4.57 -4.98 -0.02 4.10 16 13 C -0.51 -14.28 9.39 -34.44 -0.32 -14.60 16 14 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 17 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.00 -0.07 7.55 -7.55 -0.06 -0.13 16 22 C 0.06 0.77 10.19 -17.39 -0.18 0.60 16 23 N -0.51 -6.95 9.21 -13.21 -0.12 -7.07 16 24 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.08 0.83 7.62 -51.93 -0.40 0.43 16 31 H 0.11 1.41 6.01 -51.93 -0.31 1.10 16 32 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 34 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 35 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.08 1.46 7.42 -51.93 -0.39 1.07 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.17 2.01 5.92 -52.49 -0.31 1.70 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -31.25 329.61 -7.74 -38.99 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.53 Total: -1.43 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.83 Total: -6.66 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.94 Total: -44.15 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.38 Total: -8.33 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.25 -7.74 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228677360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.338 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds