Wall clock time and date at job start Tue Mar 31 2020 00:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35766 * 116.99960 * 2 1 4 4 C 1.38888 * 119.62359 * 180.02562 * 3 2 1 5 5 C 1.38366 * 119.16662 * 179.70063 * 4 3 2 6 6 C 1.50703 * 120.78147 * 180.27468 * 5 4 3 7 7 C 1.39230 * 118.43701 * 0.53933 * 5 4 3 8 8 O 1.35998 * 120.40631 * 179.73386 * 7 5 4 9 9 C 1.42903 * 116.99674 * 173.70201 * 8 7 5 10 10 C 1.53514 * 114.16696 * 201.84325 * 9 8 7 11 11 N 1.47474 * 87.93318 * 220.33085 * 10 9 8 12 12 C 1.46898 * 110.99951 * 138.70933 * 11 10 9 13 13 C 1.50702 * 109.47291 * 170.00010 * 12 11 10 14 14 H 1.08002 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00201 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99855 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00161 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46830 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46894 * 120.00119 * 17 15 13 20 20 H 1.48493 * 109.47128 * 240.00408 * 17 15 13 21 21 C 1.47479 * 87.83799 * 27.01342 * 11 10 9 22 22 C 1.38508 * 119.18136 * 359.46009 * 7 5 4 23 23 N 1.31976 * 120.75667 * 0.27279 * 22 7 5 24 24 H 1.08999 * 109.47053 * 299.99444 * 1 2 3 25 25 H 1.08996 * 109.47344 * 59.99858 * 1 2 3 26 26 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.41823 * 359.97438 * 4 3 2 28 28 H 1.09009 * 109.46801 * 270.26975 * 6 5 4 29 29 H 1.09004 * 109.46611 * 30.26514 * 6 5 4 30 30 H 1.08990 * 109.47052 * 150.26950 * 6 5 4 31 31 H 1.08994 * 113.25944 * 334.79724 * 9 8 7 32 32 H 1.09012 * 113.46919 * 105.56430 * 10 9 8 33 33 H 1.08994 * 113.53648 * 335.10895 * 10 9 8 34 34 H 1.08998 * 109.47024 * 289.99992 * 12 11 10 35 35 H 1.08997 * 109.47292 * 49.99679 * 12 11 10 36 36 H 0.97003 * 120.00197 * 180.02562 * 16 15 13 37 37 H 1.09003 * 113.47668 * 87.75450 * 21 11 10 38 38 H 1.09002 * 113.47597 * 218.22451 * 21 11 10 39 39 H 1.07998 * 119.61581 * 180.29983 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4327 1.2733 -0.0005 5 6 4.0510 2.5111 -0.0068 6 6 5.5539 2.6224 -0.0139 7 6 3.2521 3.6513 -0.0009 8 8 3.8177 4.8881 -0.0013 9 6 2.9358 6.0047 -0.1347 10 6 3.6130 7.2823 -0.6503 11 7 2.8004 8.0403 0.3192 12 6 3.5964 9.0931 0.9641 13 6 2.6868 9.9967 1.7561 14 1 1.6237 9.8074 1.7786 15 6 3.2118 11.0643 2.4529 16 7 4.5063 11.2944 2.4260 17 14 2.0842 12.1847 3.4341 18 1 0.6819 11.7142 3.3021 19 1 2.4823 12.1579 4.8645 20 1 2.1921 13.5721 2.9161 21 6 2.7597 6.8236 1.1517 22 6 1.8742 3.5105 -0.0004 23 7 1.3181 2.3136 0.0000 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0216 0.3679 -0.0005 28 1 5.9212 2.6474 1.0122 29 1 5.9795 1.7626 -0.5313 30 1 5.8480 3.5377 -0.5274 31 1 2.0030 5.7582 -0.6417 32 1 3.3749 7.5109 -1.6892 33 1 4.6827 7.3213 -0.4446 34 1 4.3278 8.6380 1.6319 35 1 4.1136 9.6759 0.2019 36 1 4.8758 12.0452 2.9165 37 1 3.6016 6.7393 1.8389 38 1 1.7984 6.6636 1.6401 39 1 1.2478 4.3902 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228677360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:44 Heat of formation + Delta-G solvation = -20.383143 kcal Electronic energy + Delta-G solvation = -21035.873281 eV Core-core repulsion = 17751.945149 eV Total energy + Delta-G solvation = -3283.928132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12013 -41.09079 -39.43649 -37.75807 -35.09859 -34.75984 -31.46030 -30.82157 -28.89330 -27.72389 -27.44276 -26.87822 -24.87484 -23.18776 -22.94532 -21.02143 -19.36623 -18.93601 -18.58807 -18.20537 -17.12594 -16.87208 -16.52150 -16.26401 -16.03271 -15.55068 -15.19875 -15.17930 -14.46089 -14.27188 -14.06309 -13.87728 -13.73906 -13.67184 -13.64481 -13.06800 -12.90043 -12.85356 -12.64653 -12.47639 -12.23234 -12.04747 -11.74499 -11.42984 -11.22422 -10.66365 -10.63853 -10.41539 -9.81037 -9.02334 -8.25149 -6.35502 0.01591 0.21914 1.39825 1.40239 1.54301 1.96908 2.19084 2.38893 2.62932 3.07370 3.19405 3.29420 3.32690 3.52263 3.82690 3.90819 3.99989 4.18619 4.43078 4.43993 4.45445 4.46014 4.54816 4.60200 4.64852 4.75253 4.76824 4.78820 4.81359 4.85212 4.96198 5.03946 5.25678 5.37851 5.52922 5.71128 6.00981 6.11671 6.31802 6.35238 6.75209 6.78635 7.34229 8.86427 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.003257 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.670011 B = 8594.613599 C = 9180.496244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.270 3.730 4 C -0.152 4.152 5 C -0.042 4.042 6 C -0.106 4.106 7 C 0.033 3.967 8 O -0.299 6.299 9 C 0.069 3.931 10 C 0.003 3.997 11 N -0.475 5.475 12 C 0.176 3.824 13 C -0.527 4.527 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.276 1.276 21 C -0.009 4.009 22 C 0.052 3.948 23 N -0.525 5.525 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.124 0.876 27 H 0.173 0.827 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.066 0.934 34 H -0.018 1.018 35 H 0.007 0.993 36 H 0.266 0.734 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -22.444 -6.155 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.091 3.909 4 C -0.172 4.172 5 C -0.050 4.050 6 C -0.163 4.163 7 C -0.015 4.015 8 O -0.211 6.211 9 C 0.013 3.987 10 C -0.126 4.126 11 N -0.199 5.199 12 C 0.049 3.951 13 C -0.565 4.565 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.139 4.139 22 C -0.103 4.103 23 N -0.250 5.250 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.190 0.810 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.000 1.000 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.963 -22.233 -6.275 23.439 hybrid contribution 0.898 1.004 0.942 1.643 sum -3.065 -21.229 -5.334 22.102 Atomic orbital electron populations 1.23015 0.76171 1.04562 1.01985 1.86211 1.24010 1.23835 1.88489 1.20002 0.90033 0.84832 0.96034 1.21055 0.91549 0.98873 1.05705 1.19880 0.98226 0.89225 0.97692 1.20736 0.87546 1.04224 1.03757 1.19907 0.92934 0.86213 1.02403 1.86181 1.35824 1.11604 1.87444 1.24207 0.94546 0.82740 0.97237 1.24074 0.97790 0.90624 1.00137 1.68910 1.37541 1.03917 1.09543 1.19944 0.91962 0.90454 0.92759 1.21444 0.94513 1.11459 1.29095 0.92087 1.25937 0.96712 0.99247 0.97795 1.70077 1.12980 1.30715 1.43624 0.85301 0.78965 0.78193 0.77975 1.18803 1.20290 1.20185 1.24316 1.02485 0.90683 0.96386 1.22716 0.91847 0.95035 1.00751 1.67156 1.41003 0.98565 1.18239 0.92969 0.92754 0.85811 0.80998 0.89842 0.88483 0.91154 0.85098 0.87525 0.91614 1.00043 0.97529 0.92536 0.92309 0.89193 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.38 113.37 1.18 1.78 16 2 O -0.32 -6.84 10.48 -90.93 -0.95 -7.79 16 3 C 0.27 6.49 7.49 84.79 0.63 7.13 16 4 C -0.15 -3.10 9.74 22.46 0.22 -2.88 16 5 C -0.04 -0.93 5.93 -19.59 -0.12 -1.04 16 6 C -0.11 -1.82 9.85 71.24 0.70 -1.12 16 7 C 0.03 0.85 6.67 22.57 0.15 1.00 16 8 O -0.30 -8.52 9.36 -93.53 -0.88 -9.40 16 9 C 0.07 2.03 4.03 30.94 0.12 2.15 16 10 C 0.00 0.09 7.52 83.58 0.63 0.72 16 11 N -0.48 -20.28 6.32 -932.96 -5.89 -26.17 16 12 C 0.18 9.36 4.57 85.56 0.39 9.75 16 13 C -0.53 -30.29 9.39 25.60 0.24 -30.05 16 14 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 17 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 C -0.01 -0.34 7.55 83.58 0.63 0.29 16 22 C 0.05 1.32 10.19 84.74 0.86 2.18 16 23 N -0.52 -13.71 9.21 -308.56 -2.84 -16.56 16 24 H 0.05 0.89 8.10 -2.39 -0.02 0.88 16 25 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.10 1.14 8.10 -2.38 -0.02 1.12 16 30 H 0.07 1.36 7.62 -2.39 -0.02 1.34 16 31 H 0.13 3.22 6.01 -2.39 -0.01 3.21 16 32 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 33 H 0.07 2.35 7.91 -2.39 -0.02 2.33 16 34 H -0.02 -1.04 7.30 -2.39 -0.02 -1.05 16 35 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.17 3.97 5.92 -2.91 -0.02 3.95 16 Total: -1.00 -67.78 329.61 -1.10 -68.87 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.05 Total: 10.02 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 6.11 Total: -9.54 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -8.45 Total: -98.64 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.83 Total: -17.19 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.78 -1.10 -68.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228677360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.491 kcal (2) G-P(sol) polarization free energy of solvation -67.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds