Wall clock time and date at job start Tue Mar 31 2020 00:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37870 * 119.55799 * 2 1 4 4 C 1.39391 * 119.21606 * 180.02562 * 3 2 1 5 5 O 1.35754 * 120.80960 * 179.97438 * 4 3 2 6 6 C 1.39025 * 118.37436 * 0.02562 * 4 3 2 7 7 C 1.50705 * 120.47969 * 179.97438 * 6 4 3 8 8 C 1.38636 * 119.04570 * 359.97438 * 6 4 3 9 9 O 1.35689 * 119.65488 * 180.02562 * 8 6 4 10 10 C 1.42894 * 116.99991 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.91581 * 333.90243 * 10 9 8 12 12 C 1.55153 * 111.00595 * 209.99785 * 10 9 8 13 13 C 1.54327 * 102.94777 * 206.42447 * 12 10 9 14 14 N 1.47023 * 107.26634 * 22.19238 * 13 12 10 15 15 C 1.36942 * 125.64451 * 181.02675 * 14 13 12 16 16 H 1.08001 * 119.99608 * 185.84961 * 15 14 13 17 17 C 1.38811 * 119.99859 * 5.83909 * 15 14 13 18 18 N 1.31619 * 119.99898 * 7.32562 * 17 15 14 19 19 Si 1.86798 * 119.99526 * 187.31977 * 17 15 14 20 20 H 1.48502 * 109.47424 * 265.01587 * 19 17 15 21 21 H 1.48507 * 109.46922 * 145.01666 * 19 17 15 22 22 H 1.48500 * 109.47468 * 25.02234 * 19 17 15 23 23 C 1.47421 * 108.70689 * 1.28873 * 14 13 12 24 24 N 1.32024 * 119.55530 * 180.29319 * 2 1 3 25 25 H 1.09002 * 109.47007 * 90.00118 * 1 2 3 26 26 H 1.09001 * 109.47273 * 209.99984 * 1 2 3 27 27 H 1.09003 * 109.46953 * 330.00048 * 1 2 3 28 28 H 1.08004 * 120.38601 * 0.04254 * 3 2 1 29 29 H 0.96699 * 113.99996 * 270.01880 * 5 4 3 30 30 H 1.09004 * 109.46637 * 270.02231 * 7 6 4 31 31 H 1.08996 * 109.46749 * 30.01307 * 7 6 4 32 32 H 1.08993 * 109.47526 * 150.01957 * 7 6 4 33 33 H 1.09001 * 110.72119 * 88.05768 * 12 10 9 34 34 H 1.09006 * 110.87285 * 324.85986 * 12 10 9 35 35 H 1.08995 * 109.87769 * 262.77669 * 13 12 10 36 36 H 1.08994 * 109.88662 * 141.60966 * 13 12 10 37 37 H 0.97007 * 119.99060 * 179.97438 * 18 17 15 38 38 H 1.08997 * 110.36765 * 94.48217 * 23 14 13 39 39 H 1.09001 * 110.36963 * 216.80734 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1993 0.0000 4 6 3.5810 1.1910 -0.0005 5 8 4.2832 2.3527 -0.0011 6 6 4.2344 -0.0362 -0.0016 7 6 5.7400 -0.1005 -0.0028 8 6 3.4809 -1.1999 -0.0016 9 8 4.1058 -2.4043 -0.0021 10 6 3.2745 -3.5666 -0.0026 11 1 2.3043 -3.3513 0.4455 12 6 3.9711 -4.7490 0.7211 13 6 3.3269 -5.9863 0.0609 14 7 2.8020 -5.5606 -1.2447 15 6 2.1367 -6.3593 -2.1362 16 1 1.8725 -5.9769 -3.1111 17 6 1.8020 -7.6604 -1.7870 18 7 1.9932 -8.0808 -0.5544 19 14 1.0802 -8.8145 -3.0662 20 1 -0.4019 -8.7861 -2.9784 21 1 1.5646 -10.1959 -2.8160 22 1 1.5043 -8.3792 -4.4211 23 6 3.1159 -4.1332 -1.4380 24 7 2.1582 -1.1484 -0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6462 2.1341 0.0007 29 1 4.4861 2.6893 -0.8846 30 1 6.1022 -0.1152 -1.0308 31 1 6.1413 0.7727 0.5113 32 1 6.0655 -1.0056 0.5100 33 1 3.7575 -4.7269 1.7897 34 1 5.0466 -4.7334 0.5439 35 1 2.5137 -6.3577 0.6843 36 1 4.0766 -6.7654 -0.0771 37 1 1.7589 -8.9900 -0.3104 38 1 4.0448 -4.0214 -1.9972 39 1 2.2980 -3.6315 -1.9552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234864795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:44 Heat of formation + Delta-G solvation = -20.749185 kcal Electronic energy + Delta-G solvation = -21719.834338 eV Core-core repulsion = 18435.890333 eV Total energy + Delta-G solvation = -3283.944005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87455 -38.76239 -37.40736 -36.20363 -33.41289 -32.15625 -31.13560 -29.42410 -29.19665 -27.33070 -25.39197 -24.48927 -23.08935 -21.78684 -20.45740 -20.08797 -18.47348 -17.41015 -17.08263 -16.70684 -15.72370 -15.27617 -14.70086 -14.60296 -14.27301 -14.17133 -13.61250 -13.27827 -13.16181 -12.92485 -12.70309 -12.41799 -12.24074 -12.21213 -12.00377 -11.76198 -11.50248 -10.94101 -10.88088 -10.79897 -10.28033 -10.15435 -10.01675 -9.92979 -9.69847 -9.46209 -9.32412 -8.62384 -8.22080 -6.83359 -5.69828 -3.06551 1.02104 1.18845 3.14339 3.40970 3.46294 3.48703 3.60453 3.97420 4.20219 4.51772 4.79132 4.93363 4.97402 5.31043 5.35699 5.39573 5.45796 5.54151 5.57594 5.64191 5.64511 5.76588 5.82229 5.83894 5.94786 6.09382 6.16777 6.18192 6.36659 6.47365 6.49347 6.67536 6.77104 7.30076 7.45330 7.57631 7.64241 7.81153 7.98030 8.25842 9.20312 9.81027 10.46341 11.39724 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.004131 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.460826 B = 6776.764833 C = 7312.921169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.180 3.820 3 C -0.243 4.243 4 C 0.180 3.820 5 O -0.489 6.489 6 C -0.198 4.198 7 C -0.095 4.095 8 C 0.354 3.646 9 O -0.292 6.292 10 C 0.072 3.928 11 H 0.099 0.901 12 C -0.139 4.139 13 C 0.174 3.826 14 N -0.600 5.600 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.128 3.872 24 N -0.537 5.537 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.252 0.748 38 H 0.025 0.975 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 19.481 1.875 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.044 3.956 3 C -0.264 4.264 4 C 0.128 3.872 5 O -0.299 6.299 6 C -0.202 4.202 7 C -0.152 4.152 8 C 0.174 3.826 9 O -0.197 6.197 10 C 0.015 3.985 11 H 0.117 0.883 12 C -0.178 4.178 13 C 0.049 3.951 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.001 3.999 24 N -0.262 5.262 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.336 18.336 2.471 18.649 hybrid contribution -0.031 0.136 -1.132 1.140 sum 2.304 18.472 1.340 18.663 Atomic orbital electron populations 1.20757 0.88384 1.03669 1.03441 1.20782 0.96714 0.86668 0.91480 1.21960 0.93635 0.99800 1.11030 1.18192 0.89247 0.84639 0.95137 1.84704 1.74886 1.36598 1.33731 1.20138 0.98227 0.90443 1.11377 1.20425 0.89289 1.03205 1.02313 1.19451 0.87039 0.86372 0.89736 1.86255 1.35655 1.11783 1.86006 1.23907 0.94405 0.80986 0.99215 0.88288 1.23064 1.00300 0.95182 0.99223 1.21255 0.96894 0.90495 0.86449 1.44326 1.65973 1.03975 1.18492 1.19056 1.29327 0.93037 0.94189 0.90411 1.24813 1.01214 0.97691 0.96651 1.69945 1.53424 1.17170 1.16211 0.86088 0.78661 0.80418 0.80527 1.21591 1.21598 1.20627 1.21833 0.98126 0.86849 0.93096 1.67250 1.08343 1.30497 1.20104 0.90016 0.89995 0.90604 0.84405 0.74679 0.91497 0.91303 0.90692 0.91527 0.91473 0.91439 0.94750 0.93713 0.95744 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.17 36.00 0.37 -0.71 16 2 C 0.18 2.41 6.77 -82.65 -0.56 1.85 16 3 C -0.24 -2.81 9.69 -39.29 -0.38 -3.20 16 4 C 0.18 2.16 6.74 -38.86 -0.26 1.90 16 5 O -0.49 -4.59 12.70 -18.97 -0.24 -4.83 16 6 C -0.20 -2.76 5.92 -104.18 -0.62 -3.38 16 7 C -0.10 -1.11 9.61 36.01 0.35 -0.77 16 8 C 0.35 5.88 7.46 -17.17 -0.13 5.76 16 9 O -0.29 -5.29 8.98 -18.77 -0.17 -5.46 16 10 C 0.07 1.43 3.36 -24.46 -0.08 1.35 16 11 H 0.10 2.06 6.95 -51.93 -0.36 1.70 16 12 C -0.14 -2.78 6.68 -24.90 -0.17 -2.95 16 13 C 0.17 4.33 5.45 -3.06 -0.02 4.31 16 14 N -0.60 -15.94 3.39 -169.93 -0.58 -16.52 16 15 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 16 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 17 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 18 N -0.92 -27.22 10.46 55.49 0.58 -26.64 16 19 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.13 2.89 6.98 -2.41 -0.02 2.87 16 24 N -0.54 -8.92 8.54 -9.62 -0.08 -9.00 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.40 1.77 9.06 45.56 0.41 2.18 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.71 7.61 -51.93 -0.40 0.31 16 32 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.84 6.88 -51.93 -0.36 1.49 16 36 H 0.03 0.92 7.98 -51.93 -0.41 0.50 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -32.83 324.80 -7.24 -40.07 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.85 Total: 0.15 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.77 Total: 0.07 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.08 Total: -52.16 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.41 Total: -10.29 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.83 -7.24 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234864795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.317 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds