Wall clock time and date at job start Tue Mar 31 2020 00:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37870 * 119.55799 * 2 1 4 4 C 1.39391 * 119.21606 * 180.02562 * 3 2 1 5 5 O 1.35754 * 120.80960 * 179.97438 * 4 3 2 6 6 C 1.39025 * 118.37436 * 0.02562 * 4 3 2 7 7 C 1.50705 * 120.47969 * 179.97438 * 6 4 3 8 8 C 1.38636 * 119.04570 * 359.97438 * 6 4 3 9 9 O 1.35689 * 119.65488 * 180.02562 * 8 6 4 10 10 C 1.42894 * 116.99991 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.91581 * 333.90243 * 10 9 8 12 12 C 1.55153 * 111.00595 * 209.99785 * 10 9 8 13 13 C 1.54327 * 102.94777 * 206.42447 * 12 10 9 14 14 N 1.47023 * 107.26634 * 22.19238 * 13 12 10 15 15 C 1.36942 * 125.64451 * 181.02675 * 14 13 12 16 16 H 1.08001 * 119.99608 * 185.84961 * 15 14 13 17 17 C 1.38811 * 119.99859 * 5.83909 * 15 14 13 18 18 N 1.31619 * 119.99898 * 7.32562 * 17 15 14 19 19 Si 1.86798 * 119.99526 * 187.31977 * 17 15 14 20 20 H 1.48502 * 109.47424 * 265.01587 * 19 17 15 21 21 H 1.48507 * 109.46922 * 145.01666 * 19 17 15 22 22 H 1.48500 * 109.47468 * 25.02234 * 19 17 15 23 23 C 1.47421 * 108.70689 * 1.28873 * 14 13 12 24 24 N 1.32024 * 119.55530 * 180.29319 * 2 1 3 25 25 H 1.09002 * 109.47007 * 90.00118 * 1 2 3 26 26 H 1.09001 * 109.47273 * 209.99984 * 1 2 3 27 27 H 1.09003 * 109.46953 * 330.00048 * 1 2 3 28 28 H 1.08004 * 120.38601 * 0.04254 * 3 2 1 29 29 H 0.96699 * 113.99996 * 270.01880 * 5 4 3 30 30 H 1.09004 * 109.46637 * 270.02231 * 7 6 4 31 31 H 1.08996 * 109.46749 * 30.01307 * 7 6 4 32 32 H 1.08993 * 109.47526 * 150.01957 * 7 6 4 33 33 H 1.09001 * 110.72119 * 88.05768 * 12 10 9 34 34 H 1.09006 * 110.87285 * 324.85986 * 12 10 9 35 35 H 1.08995 * 109.87769 * 262.77669 * 13 12 10 36 36 H 1.08994 * 109.88662 * 141.60966 * 13 12 10 37 37 H 0.97007 * 119.99060 * 179.97438 * 18 17 15 38 38 H 1.08997 * 110.36765 * 94.48217 * 23 14 13 39 39 H 1.09001 * 110.36963 * 216.80734 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1993 0.0000 4 6 3.5810 1.1910 -0.0005 5 8 4.2832 2.3527 -0.0011 6 6 4.2344 -0.0362 -0.0016 7 6 5.7400 -0.1005 -0.0028 8 6 3.4809 -1.1999 -0.0016 9 8 4.1058 -2.4043 -0.0021 10 6 3.2745 -3.5666 -0.0026 11 1 2.3043 -3.3513 0.4455 12 6 3.9711 -4.7490 0.7211 13 6 3.3269 -5.9863 0.0609 14 7 2.8020 -5.5606 -1.2447 15 6 2.1367 -6.3593 -2.1362 16 1 1.8725 -5.9769 -3.1111 17 6 1.8020 -7.6604 -1.7870 18 7 1.9932 -8.0808 -0.5544 19 14 1.0802 -8.8145 -3.0662 20 1 -0.4019 -8.7861 -2.9784 21 1 1.5646 -10.1959 -2.8160 22 1 1.5043 -8.3792 -4.4211 23 6 3.1159 -4.1332 -1.4380 24 7 2.1582 -1.1484 -0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6462 2.1341 0.0007 29 1 4.4861 2.6893 -0.8846 30 1 6.1022 -0.1152 -1.0308 31 1 6.1413 0.7727 0.5113 32 1 6.0655 -1.0056 0.5100 33 1 3.7575 -4.7269 1.7897 34 1 5.0466 -4.7334 0.5439 35 1 2.5137 -6.3577 0.6843 36 1 4.0766 -6.7654 -0.0771 37 1 1.7589 -8.9900 -0.3104 38 1 4.0448 -4.0214 -1.9972 39 1 2.2980 -3.6315 -1.9552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234864795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:44 Heat of formation + Delta-G solvation = -44.622811 kcal Electronic energy + Delta-G solvation = -21720.869576 eV Core-core repulsion = 18435.890333 eV Total energy + Delta-G solvation = -3284.979243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95562 -40.08420 -38.53131 -37.73172 -34.66691 -33.94274 -32.18743 -31.17439 -30.25808 -29.12883 -26.77514 -26.07681 -24.25584 -22.85370 -22.16920 -21.81618 -19.65439 -18.99690 -18.35185 -18.01998 -16.91877 -16.74111 -16.25037 -15.89521 -15.87150 -15.56417 -14.86826 -14.57417 -14.25395 -14.15226 -14.03168 -13.83344 -13.68144 -13.55644 -13.08345 -13.03223 -12.92007 -12.76593 -12.63086 -12.19512 -12.05005 -11.90206 -11.73946 -11.62107 -11.48706 -10.76781 -10.61858 -10.32634 -9.32036 -8.96452 -7.86932 -5.27594 0.04616 0.16502 1.45629 1.47784 1.57362 1.87879 2.48479 2.58267 3.07890 3.17095 3.29629 3.62620 3.74939 3.86816 3.92481 3.97729 4.03020 4.16397 4.44024 4.50875 4.56255 4.68654 4.75514 4.77236 4.79173 4.81002 4.90652 4.92898 5.01550 5.08777 5.16855 5.28346 5.36427 5.52023 5.52490 5.69603 6.13151 6.27049 6.69679 6.91167 7.03917 7.68953 8.33848 9.21220 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.004131 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.460826 B = 6776.764833 C = 7312.921169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.162 3.838 3 C -0.229 4.229 4 C 0.189 3.811 5 O -0.486 6.486 6 C -0.206 4.206 7 C -0.091 4.091 8 C 0.319 3.681 9 O -0.296 6.296 10 C 0.094 3.906 11 H 0.088 0.912 12 C -0.125 4.125 13 C 0.181 3.819 14 N -0.621 5.621 15 C -0.250 4.250 16 H 0.080 0.920 17 C -0.060 4.060 18 N -0.947 5.947 19 Si 0.983 3.017 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.129 3.871 24 N -0.571 5.571 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.420 0.580 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.007 0.993 37 H 0.250 0.750 38 H 0.026 0.974 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 22.035 1.451 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.026 3.974 3 C -0.249 4.249 4 C 0.137 3.863 5 O -0.300 6.300 6 C -0.210 4.210 7 C -0.148 4.148 8 C 0.141 3.859 9 O -0.203 6.203 10 C 0.036 3.964 11 H 0.106 0.894 12 C -0.163 4.163 13 C 0.057 3.943 14 N -0.348 5.348 15 C -0.379 4.379 16 H 0.098 0.902 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.810 3.190 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.194 1.194 23 C 0.003 3.997 24 N -0.296 5.296 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.126 0.874 28 H 0.189 0.811 29 H 0.282 0.718 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.321 20.953 2.025 21.178 hybrid contribution -0.028 -0.451 -1.014 1.110 sum 2.293 20.502 1.011 20.654 Atomic orbital electron populations 1.20845 0.86516 1.04428 1.04187 1.21340 0.98068 0.86533 0.91455 1.22298 0.93647 1.00390 1.08603 1.18216 0.89572 0.84800 0.93758 1.84663 1.74426 1.35093 1.35840 1.20409 0.99185 0.90284 1.11091 1.20437 0.88074 1.03296 1.03031 1.19725 0.87698 0.86219 0.92305 1.86209 1.35186 1.11893 1.86988 1.23358 0.94262 0.81943 0.96790 0.89391 1.22889 1.00634 0.92793 0.99964 1.21012 0.95290 0.92115 0.85930 1.44599 1.65915 1.05585 1.18736 1.19428 1.29663 0.93907 0.94874 0.90205 1.25694 1.01860 0.99124 0.98704 1.70157 1.54256 1.17196 1.17933 0.85015 0.77802 0.77799 0.78389 1.21031 1.21651 1.19423 1.21866 0.97644 0.85095 0.95057 1.67186 1.08697 1.32568 1.21177 0.89188 0.91617 0.87444 0.81059 0.71828 0.90445 0.89683 0.91987 0.89331 0.90018 0.94455 0.97463 0.94087 0.95578 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 10.17 71.23 0.72 -1.19 16 2 C 0.16 4.08 6.77 42.44 0.29 4.37 16 3 C -0.23 -4.57 9.69 22.46 0.22 -4.35 16 4 C 0.19 3.99 6.74 22.74 0.15 4.14 16 5 O -0.49 -7.20 12.70 -90.79 -1.15 -8.36 16 6 C -0.21 -5.41 5.92 -19.58 -0.12 -5.52 16 7 C -0.09 -1.97 9.61 71.24 0.68 -1.29 16 8 C 0.32 10.49 7.46 84.71 0.63 11.13 16 9 O -0.30 -10.76 8.98 -90.08 -0.81 -11.57 16 10 C 0.09 3.81 3.36 32.07 0.11 3.92 16 11 H 0.09 3.76 6.95 -2.38 -0.02 3.74 16 12 C -0.12 -5.02 6.68 31.78 0.21 -4.81 16 13 C 0.18 9.38 5.45 86.73 0.47 9.85 16 14 N -0.62 -34.00 3.39 -691.54 -2.35 -36.35 16 15 C -0.25 -14.62 10.26 84.03 0.86 -13.76 16 16 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 17 C -0.06 -3.51 5.45 84.86 0.46 -3.04 16 18 N -0.95 -57.69 10.46 21.65 0.23 -57.46 16 19 Si 0.98 46.39 29.56 68.60 2.03 48.41 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.13 5.99 6.98 86.94 0.61 6.60 16 24 N -0.57 -18.87 8.54 -297.15 -2.54 -21.40 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 1.28 8.07 -2.39 -0.02 1.26 16 28 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.42 1.95 9.06 -74.06 -0.67 1.28 16 30 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.53 7.61 -2.39 -0.02 1.51 16 32 H 0.06 1.50 7.55 -2.39 -0.02 1.48 16 33 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 35 H 0.04 2.14 6.88 -2.39 -0.02 2.12 16 36 H 0.01 0.40 7.98 -2.39 -0.02 0.38 16 37 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -72.72 324.80 1.11 -71.61 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.39 Total: 9.08 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.31 Total: 6.03 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -4.66 Total: -115.21 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.96 Total: -19.92 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.72 1.11 -71.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234864795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.988 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds