Wall clock time and date at job start Tue Mar 31 2020 00:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37869 * 119.55494 * 2 1 4 4 C 1.39394 * 119.21326 * 179.97438 * 3 2 1 5 5 O 1.35746 * 120.81249 * 180.02562 * 4 3 2 6 6 C 1.39036 * 118.37290 * 0.02562 * 4 3 2 7 7 C 1.50703 * 120.47392 * 180.02562 * 6 4 3 8 8 C 1.38639 * 119.04449 * 359.97438 * 6 4 3 9 9 O 1.35683 * 119.65387 * 179.97438 * 8 6 4 10 10 C 1.42897 * 117.00046 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.88275 * 32.43035 * 10 9 8 12 12 C 1.55161 * 111.03504 * 156.33235 * 10 9 8 13 13 C 1.54325 * 103.02048 * 153.39840 * 12 10 9 14 14 N 1.47025 * 107.26602 * 338.13711 * 13 12 10 15 15 C 1.36937 * 125.64875 * 178.84876 * 14 13 12 16 16 H 1.08002 * 119.99997 * 189.57748 * 15 14 13 17 17 C 1.38814 * 120.00047 * 9.58023 * 15 14 13 18 18 N 1.31619 * 119.99927 * 195.13281 * 17 15 14 19 19 Si 1.86798 * 120.00048 * 15.40252 * 17 15 14 20 20 H 1.48495 * 109.47469 * 174.24186 * 19 17 15 21 21 H 1.48498 * 109.47254 * 294.24696 * 19 17 15 22 22 H 1.48504 * 109.47161 * 54.24158 * 19 17 15 23 23 C 1.47422 * 108.70081 * 358.58823 * 14 13 12 24 24 N 1.32015 * 119.55362 * 180.22757 * 2 1 3 25 25 H 1.08996 * 109.46859 * 90.00133 * 1 2 3 26 26 H 1.08998 * 109.47115 * 210.00270 * 1 2 3 27 27 H 1.08998 * 109.47192 * 330.00397 * 1 2 3 28 28 H 1.07993 * 120.38991 * 0.02562 * 3 2 1 29 29 H 0.96690 * 114.00598 * 269.98308 * 5 4 3 30 30 H 1.08998 * 109.46649 * 269.97429 * 7 6 4 31 31 H 1.08995 * 109.46931 * 29.97779 * 7 6 4 32 32 H 1.08998 * 109.46492 * 149.98325 * 7 6 4 33 33 H 1.08999 * 110.71866 * 271.95705 * 12 10 9 34 34 H 1.08998 * 110.71995 * 35.04940 * 12 10 9 35 35 H 1.09004 * 109.99166 * 218.66683 * 13 12 10 36 36 H 1.08998 * 109.78559 * 97.49747 * 13 12 10 37 37 H 0.96999 * 119.99970 * 3.12175 * 18 17 15 38 38 H 1.09008 * 110.36520 * 143.19392 * 23 14 13 39 39 H 1.09000 * 110.36665 * 265.40118 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1993 0.0000 4 6 3.5810 1.1910 0.0005 5 8 4.2833 2.3527 0.0011 6 6 4.2344 -0.0363 0.0005 7 6 5.7401 -0.1005 0.0017 8 6 3.4809 -1.2000 0.0005 9 8 4.1058 -2.4044 0.0000 10 6 3.2744 -3.5666 0.0005 11 1 2.3488 -3.3825 -0.5449 12 6 4.0287 -4.7912 -0.5815 13 6 3.3287 -5.9864 0.0991 14 7 2.6865 -5.4784 1.3202 15 6 1.9418 -6.2200 2.1981 16 1 1.3836 -5.7292 2.9816 17 6 1.9045 -7.6027 2.0810 18 7 0.9779 -8.2919 2.7124 19 14 3.1740 -8.4859 1.0332 20 1 3.0047 -9.9536 1.1827 21 1 2.9891 -8.1089 -0.3912 22 1 4.5374 -8.0973 1.4750 23 6 2.9823 -4.0396 1.4464 24 7 2.1582 -1.1484 -0.0046 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6462 2.1340 0.0004 29 1 4.4874 2.6894 -0.8820 30 1 6.1038 -0.1160 -1.0257 31 1 6.1406 0.7731 0.5158 32 1 6.0647 -1.0052 0.5156 33 1 3.9110 -4.8378 -1.6641 34 1 5.0840 -4.7584 -0.3108 35 1 4.0621 -6.7506 0.3565 36 1 2.5756 -6.4027 -0.5700 37 1 0.2940 -7.8308 3.2229 38 1 2.1208 -3.5094 1.8523 39 1 3.8550 -3.8860 2.0812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234864797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:48 Heat of formation + Delta-G solvation = -11.128996 kcal Electronic energy + Delta-G solvation = -21833.259488 eV Core-core repulsion = 18549.732646 eV Total energy + Delta-G solvation = -3283.526842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98460 -38.97411 -37.58192 -36.54218 -33.51380 -32.37172 -31.24806 -29.64351 -29.40672 -28.17208 -25.48373 -24.14992 -23.03573 -21.92012 -20.93725 -20.38923 -18.59684 -17.63611 -17.42415 -17.03757 -15.73539 -15.46299 -15.26008 -15.04002 -14.49953 -13.84850 -13.76921 -13.47259 -13.33686 -13.14764 -12.87403 -12.66240 -12.35364 -12.31222 -12.24886 -12.13174 -11.73359 -11.40255 -11.06254 -10.97728 -10.57189 -10.27666 -10.02312 -9.61993 -9.43041 -9.33945 -8.98196 -8.69977 -8.33244 -7.04283 -6.30489 -3.20825 0.93508 1.09410 2.98431 3.42035 3.49750 3.51177 3.72585 3.88836 4.10241 4.63155 4.71011 4.83238 4.85105 5.03530 5.10100 5.25951 5.28534 5.34460 5.46030 5.47126 5.53832 5.55338 5.58006 5.73012 5.81152 5.88517 5.98653 6.02619 6.09314 6.14303 6.25400 6.36624 6.54460 6.61865 6.73237 7.22717 7.40892 7.66498 7.87664 8.34297 9.05480 9.56000 10.22466 11.20957 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.004465 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.652051 B = 6269.162924 C = 6922.559379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.181 3.819 3 C -0.241 4.241 4 C 0.181 3.819 5 O -0.487 6.487 6 C -0.197 4.197 7 C -0.096 4.096 8 C 0.352 3.648 9 O -0.291 6.291 10 C 0.075 3.925 11 H 0.099 0.901 12 C -0.123 4.123 13 C 0.112 3.888 14 N -0.609 5.609 15 C -0.321 4.321 16 H 0.079 0.921 17 C -0.022 4.022 18 N -0.928 5.928 19 Si 1.071 2.929 20 H -0.301 1.301 21 H -0.285 1.285 22 H -0.297 1.297 23 C 0.126 3.874 24 N -0.536 5.536 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 20.908 -10.321 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.044 3.956 3 C -0.262 4.262 4 C 0.128 3.872 5 O -0.298 6.298 6 C -0.200 4.200 7 C -0.153 4.153 8 C 0.172 3.828 9 O -0.196 6.196 10 C 0.018 3.982 11 H 0.117 0.883 12 C -0.161 4.161 13 C -0.012 4.012 14 N -0.338 5.338 15 C -0.448 4.448 16 H 0.097 0.903 17 C -0.221 4.221 18 N -0.569 5.569 19 Si 0.905 3.095 20 H -0.229 1.229 21 H -0.213 1.213 22 H -0.226 1.226 23 C -0.001 4.001 24 N -0.261 5.261 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.711 18.447 -10.134 21.809 hybrid contribution -0.129 2.388 0.130 2.395 sum 5.582 20.836 -10.004 23.777 Atomic orbital electron populations 1.20767 0.88304 1.03943 1.03313 1.20788 0.96745 0.86630 0.91450 1.21988 0.93652 0.99860 1.10665 1.18197 0.89249 0.84657 0.95046 1.84716 1.74841 1.36536 1.33695 1.20137 0.98244 0.90395 1.11231 1.20434 0.89233 1.03417 1.02209 1.19411 0.87101 0.86127 0.90139 1.86232 1.35341 1.11724 1.86330 1.23725 0.93865 0.81213 0.99360 0.88320 1.22705 1.00346 0.93168 0.99910 1.22010 0.95395 0.94616 0.89228 1.44676 1.60919 1.04227 1.23937 1.20175 1.23510 0.90286 1.10869 0.90335 1.25841 1.02001 0.92625 1.01659 1.70904 1.14286 1.37447 1.34296 0.83828 0.75109 0.74827 0.75701 1.22885 1.21265 1.22627 1.21833 0.98656 0.86617 0.92968 1.67258 1.08244 1.30602 1.20015 0.90112 0.89860 0.90483 0.84298 0.74689 0.91557 0.91173 0.90631 0.90563 0.90386 0.94805 0.93096 0.92862 0.93069 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.17 36.01 0.37 -0.68 16 2 C 0.18 2.32 6.77 -82.65 -0.56 1.76 16 3 C -0.24 -2.66 9.69 -39.29 -0.38 -3.04 16 4 C 0.18 2.07 6.74 -38.86 -0.26 1.81 16 5 O -0.49 -4.34 12.70 -18.95 -0.24 -4.58 16 6 C -0.20 -2.60 5.92 -104.18 -0.62 -3.21 16 7 C -0.10 -1.05 9.61 36.01 0.35 -0.71 16 8 C 0.35 5.55 7.46 -17.17 -0.13 5.42 16 9 O -0.29 -4.92 8.99 -18.75 -0.17 -5.09 16 10 C 0.08 1.40 3.23 -24.58 -0.08 1.32 16 11 H 0.10 1.86 7.16 -51.93 -0.37 1.49 16 12 C -0.12 -2.19 6.68 -24.89 -0.17 -2.36 16 13 C 0.11 2.51 4.61 -3.06 -0.01 2.50 16 14 N -0.61 -15.63 3.33 -170.07 -0.57 -16.20 16 15 C -0.32 -9.52 10.55 -15.06 -0.16 -9.68 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 17 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 18 N -0.93 -29.67 13.71 55.49 0.76 -28.91 16 19 Si 1.07 27.23 24.52 -169.99 -4.17 23.07 16 20 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 21 H -0.29 -6.56 5.42 56.52 0.31 -6.26 16 22 H -0.30 -7.32 6.82 56.52 0.39 -6.93 16 23 C 0.13 2.78 6.97 -2.53 -0.02 2.76 16 24 N -0.54 -8.51 8.63 -9.62 -0.08 -8.59 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.40 1.50 9.06 45.56 0.41 1.91 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.69 7.61 -51.93 -0.40 0.30 16 32 H 0.07 0.91 7.55 -51.93 -0.39 0.52 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.03 0.79 3.90 -51.93 -0.20 0.59 16 36 H 0.05 1.17 6.70 -51.93 -0.35 0.82 16 37 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 38 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -34.72 317.03 -6.24 -40.96 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.78 Total: -0.56 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.77 Total: -4.87 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.11 Total: -53.70 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.41 Total: -9.67 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.17 Total: 23.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.72 -6.24 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234864797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.829 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds