Wall clock time and date at job start Tue Mar 31 2020 00:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37869 * 119.55494 * 2 1 4 4 C 1.39394 * 119.21326 * 179.97438 * 3 2 1 5 5 O 1.35746 * 120.81249 * 180.02562 * 4 3 2 6 6 C 1.39036 * 118.37290 * 0.02562 * 4 3 2 7 7 C 1.50703 * 120.47392 * 180.02562 * 6 4 3 8 8 C 1.38639 * 119.04449 * 359.97438 * 6 4 3 9 9 O 1.35683 * 119.65387 * 179.97438 * 8 6 4 10 10 C 1.42897 * 117.00046 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.88275 * 32.43035 * 10 9 8 12 12 C 1.55161 * 111.03504 * 156.33235 * 10 9 8 13 13 C 1.54325 * 103.02048 * 153.39840 * 12 10 9 14 14 N 1.47025 * 107.26602 * 338.13711 * 13 12 10 15 15 C 1.36937 * 125.64875 * 178.84876 * 14 13 12 16 16 H 1.08002 * 119.99997 * 189.57748 * 15 14 13 17 17 C 1.38814 * 120.00047 * 9.58023 * 15 14 13 18 18 N 1.31619 * 119.99927 * 195.13281 * 17 15 14 19 19 Si 1.86798 * 120.00048 * 15.40252 * 17 15 14 20 20 H 1.48495 * 109.47469 * 174.24186 * 19 17 15 21 21 H 1.48498 * 109.47254 * 294.24696 * 19 17 15 22 22 H 1.48504 * 109.47161 * 54.24158 * 19 17 15 23 23 C 1.47422 * 108.70081 * 358.58823 * 14 13 12 24 24 N 1.32015 * 119.55362 * 180.22757 * 2 1 3 25 25 H 1.08996 * 109.46859 * 90.00133 * 1 2 3 26 26 H 1.08998 * 109.47115 * 210.00270 * 1 2 3 27 27 H 1.08998 * 109.47192 * 330.00397 * 1 2 3 28 28 H 1.07993 * 120.38991 * 0.02562 * 3 2 1 29 29 H 0.96690 * 114.00598 * 269.98308 * 5 4 3 30 30 H 1.08998 * 109.46649 * 269.97429 * 7 6 4 31 31 H 1.08995 * 109.46931 * 29.97779 * 7 6 4 32 32 H 1.08998 * 109.46492 * 149.98325 * 7 6 4 33 33 H 1.08999 * 110.71866 * 271.95705 * 12 10 9 34 34 H 1.08998 * 110.71995 * 35.04940 * 12 10 9 35 35 H 1.09004 * 109.99166 * 218.66683 * 13 12 10 36 36 H 1.08998 * 109.78559 * 97.49747 * 13 12 10 37 37 H 0.96999 * 119.99970 * 3.12175 * 18 17 15 38 38 H 1.09008 * 110.36520 * 143.19392 * 23 14 13 39 39 H 1.09000 * 110.36665 * 265.40118 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1993 0.0000 4 6 3.5810 1.1910 0.0005 5 8 4.2833 2.3527 0.0011 6 6 4.2344 -0.0363 0.0005 7 6 5.7401 -0.1005 0.0017 8 6 3.4809 -1.2000 0.0005 9 8 4.1058 -2.4044 0.0000 10 6 3.2744 -3.5666 0.0005 11 1 2.3488 -3.3825 -0.5449 12 6 4.0287 -4.7912 -0.5815 13 6 3.3287 -5.9864 0.0991 14 7 2.6865 -5.4784 1.3202 15 6 1.9418 -6.2200 2.1981 16 1 1.3836 -5.7292 2.9816 17 6 1.9045 -7.6027 2.0810 18 7 0.9779 -8.2919 2.7124 19 14 3.1740 -8.4859 1.0332 20 1 3.0047 -9.9536 1.1827 21 1 2.9891 -8.1089 -0.3912 22 1 4.5374 -8.0973 1.4750 23 6 2.9823 -4.0396 1.4464 24 7 2.1582 -1.1484 -0.0046 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6462 2.1340 0.0004 29 1 4.4874 2.6894 -0.8820 30 1 6.1038 -0.1160 -1.0257 31 1 6.1406 0.7731 0.5158 32 1 6.0647 -1.0052 0.5156 33 1 3.9110 -4.8378 -1.6641 34 1 5.0840 -4.7584 -0.3108 35 1 4.0621 -6.7506 0.3565 36 1 2.5756 -6.4027 -0.5700 37 1 0.2940 -7.8308 3.2229 38 1 2.1208 -3.5094 1.8523 39 1 3.8550 -3.8860 2.0812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234864797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:47 Heat of formation + Delta-G solvation = -38.712150 kcal Electronic energy + Delta-G solvation = -21834.455584 eV Core-core repulsion = 18549.732646 eV Total energy + Delta-G solvation = -3284.722937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00748 -40.24835 -38.69838 -37.88284 -34.83387 -34.16403 -32.25933 -31.42502 -30.30907 -29.84779 -26.59060 -25.81743 -24.23161 -23.04838 -22.53435 -21.97948 -19.80084 -19.57446 -18.46522 -18.14903 -17.24979 -16.65050 -16.60676 -16.21494 -15.71779 -15.48325 -15.35948 -14.75387 -14.37296 -14.18823 -14.18552 -14.10371 -13.69101 -13.67639 -13.23547 -13.15332 -13.11482 -13.05905 -12.72686 -12.28519 -11.80342 -11.76172 -11.65707 -11.46349 -11.07920 -10.74238 -10.66571 -10.36520 -9.37075 -9.18133 -8.71817 -5.54328 0.01157 0.12759 1.39573 1.50315 1.69891 1.82588 2.53033 2.54253 3.02995 3.04594 3.13869 3.32187 3.54028 3.72262 3.84282 3.91490 3.96010 4.05384 4.22371 4.39534 4.42966 4.55009 4.59901 4.71583 4.73783 4.75622 4.77021 4.82176 4.86468 4.97615 5.01929 5.09753 5.14610 5.25544 5.42610 5.49338 6.02213 6.19000 6.68543 6.75444 6.86688 7.34063 8.00265 8.81463 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.004465 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.652051 B = 6269.162924 C = 6922.559379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.161 3.839 3 C -0.229 4.229 4 C 0.189 3.811 5 O -0.486 6.486 6 C -0.204 4.204 7 C -0.091 4.091 8 C 0.318 3.682 9 O -0.293 6.293 10 C 0.095 3.905 11 H 0.092 0.908 12 C -0.109 4.109 13 C 0.101 3.899 14 N -0.629 5.629 15 C -0.319 4.319 16 H 0.041 0.959 17 C -0.076 4.076 18 N -0.959 5.959 19 Si 1.110 2.890 20 H -0.308 1.308 21 H -0.242 1.242 22 H -0.283 1.283 23 C 0.125 3.875 24 N -0.570 5.570 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.171 0.829 29 H 0.421 0.579 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.247 0.753 38 H 0.030 0.970 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.234 23.240 -12.817 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.025 3.975 3 C -0.249 4.249 4 C 0.136 3.864 5 O -0.301 6.301 6 C -0.208 4.208 7 C -0.148 4.148 8 C 0.140 3.860 9 O -0.199 6.199 10 C 0.038 3.962 11 H 0.110 0.890 12 C -0.147 4.147 13 C -0.023 4.023 14 N -0.358 5.358 15 C -0.447 4.447 16 H 0.059 0.941 17 C -0.269 4.269 18 N -0.603 5.603 19 Si 0.936 3.064 20 H -0.237 1.237 21 H -0.167 1.167 22 H -0.211 1.211 23 C -0.001 4.001 24 N -0.295 5.295 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.188 0.812 29 H 0.282 0.718 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.482 20.863 -12.667 25.528 hybrid contribution -0.742 1.924 0.994 2.289 sum 6.740 22.788 -11.672 26.475 Atomic orbital electron populations 1.20840 0.86665 1.04147 1.04359 1.21302 0.97984 0.86595 0.91584 1.22303 0.93742 1.00369 1.08491 1.18227 0.89528 0.84887 0.93742 1.84674 1.74379 1.35114 1.35889 1.20420 0.99263 0.90213 1.10866 1.20446 0.87910 1.03177 1.03308 1.19699 0.87655 0.86181 0.92483 1.86204 1.34855 1.11748 1.87111 1.23266 0.94334 0.82573 0.96068 0.88974 1.22683 1.00432 0.90060 1.01524 1.22215 0.95369 0.96855 0.87879 1.44709 1.60950 1.05517 1.24587 1.20041 1.23105 0.90896 1.10695 0.94088 1.27262 1.03054 0.93739 1.02806 1.71015 1.15400 1.37750 1.36138 0.83413 0.73086 0.73112 0.76744 1.23736 1.16706 1.21078 1.21873 0.97452 0.84838 0.95925 1.67196 1.08711 1.32525 1.21104 0.88587 0.92109 0.87761 0.81165 0.71754 0.89752 0.90005 0.92123 0.86860 0.88668 0.94588 0.93365 0.94424 0.95196 0.95802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 10.17 71.24 0.72 -1.17 16 2 C 0.16 3.93 6.77 42.45 0.29 4.22 16 3 C -0.23 -4.40 9.69 22.46 0.22 -4.18 16 4 C 0.19 3.78 6.74 22.74 0.15 3.94 16 5 O -0.49 -6.79 12.70 -90.70 -1.15 -7.94 16 6 C -0.20 -5.02 5.92 -19.58 -0.12 -5.13 16 7 C -0.09 -1.80 9.61 71.24 0.68 -1.12 16 8 C 0.32 9.81 7.46 84.71 0.63 10.45 16 9 O -0.29 -9.65 8.99 -90.01 -0.81 -10.46 16 10 C 0.10 3.45 3.23 31.99 0.10 3.55 16 11 H 0.09 3.46 7.16 -2.39 -0.02 3.44 16 12 C -0.11 -3.56 6.68 31.78 0.21 -3.35 16 13 C 0.10 4.31 4.61 86.73 0.40 4.71 16 14 N -0.63 -32.63 3.33 -691.98 -2.30 -34.93 16 15 C -0.32 -19.62 10.55 84.03 0.89 -18.74 16 16 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 17 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 18 N -0.96 -63.50 13.71 21.65 0.30 -63.20 16 19 Si 1.11 54.35 24.52 68.60 1.68 56.04 16 20 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 21 H -0.24 -10.20 5.42 99.48 0.54 -9.66 16 22 H -0.28 -13.12 6.82 99.48 0.68 -12.44 16 23 C 0.13 5.65 6.97 86.85 0.61 6.26 16 24 N -0.57 -17.97 8.63 -297.16 -2.57 -20.54 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 28 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.42 1.36 9.06 -74.06 -0.67 0.69 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.40 7.61 -2.39 -0.02 1.38 16 32 H 0.06 1.38 7.55 -2.39 -0.02 1.36 16 33 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.04 1.57 3.90 -2.38 -0.01 1.57 16 36 H 0.05 2.09 6.70 -2.39 -0.02 2.08 16 37 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 38 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -78.64 317.03 0.57 -78.07 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.16 Total: 7.75 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.26 Total: -4.78 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -4.57 Total: -118.67 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.96 Total: -18.40 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 1.68 Total: 56.04 kcal Total: -78.64 0.57 -78.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234864797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.357 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds