Wall clock time and date at job start Tue Mar 31 2020 00:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37862 * 119.55696 * 2 1 4 4 C 1.39403 * 119.21662 * 180.02562 * 3 2 1 5 5 O 1.35745 * 120.81158 * 179.97438 * 4 3 2 6 6 C 1.39031 * 118.36934 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.47496 * 179.97438 * 6 4 3 8 8 C 1.38635 * 119.04819 * 359.97438 * 6 4 3 9 9 O 1.35688 * 119.65553 * 180.02562 * 8 6 4 10 10 C 1.42900 * 116.99924 * 179.97438 * 9 8 6 11 11 C 1.53941 * 113.73370 * 246.72768 * 10 9 8 12 12 N 1.47957 * 86.18189 * 221.92191 * 11 10 9 13 13 C 1.46892 * 111.00169 * 137.58146 * 12 11 10 14 14 C 1.50706 * 109.47117 * 70.63967 * 13 12 11 15 15 H 1.08004 * 119.99519 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00265 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47436 * 59.99565 * 18 16 14 20 20 H 1.48498 * 109.47347 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.47137 * 300.00038 * 18 16 14 22 22 C 1.47963 * 90.76080 * 24.68928 * 12 11 10 23 23 N 1.32027 * 119.55163 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.46807 * 270.00163 * 1 2 3 25 25 H 1.09003 * 109.46862 * 29.99607 * 1 2 3 26 26 H 1.08998 * 109.47085 * 150.00085 * 1 2 3 27 27 H 1.08000 * 120.39171 * 359.97438 * 3 2 1 28 28 H 0.96700 * 113.99573 * 270.01716 * 5 4 3 29 29 H 1.09001 * 109.47257 * 270.01745 * 7 6 4 30 30 H 1.09003 * 109.47401 * 30.01852 * 7 6 4 31 31 H 1.08998 * 109.47057 * 150.01876 * 7 6 4 32 32 H 1.08998 * 112.93735 * 18.43627 * 10 9 8 33 33 H 1.09000 * 113.75815 * 336.24559 * 11 10 9 34 34 H 1.09004 * 113.75569 * 107.60267 * 11 10 9 35 35 H 1.08994 * 109.47584 * 190.64190 * 13 12 11 36 36 H 1.09003 * 109.47362 * 310.64175 * 13 12 11 37 37 H 0.97002 * 119.99648 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.75508 * 220.99014 * 22 12 11 39 39 H 1.09003 * 113.75985 * 89.63186 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1992 0.0000 4 6 3.5811 1.1909 -0.0005 5 8 4.2833 2.3526 -0.0011 6 6 4.2344 -0.0363 -0.0016 7 6 5.7400 -0.1006 -0.0028 8 6 3.4809 -1.2000 -0.0016 9 8 4.1058 -2.4044 -0.0021 10 6 3.2744 -3.5667 -0.0014 11 6 3.3678 -4.3945 1.2931 12 7 3.3709 -5.5849 0.4144 13 6 4.3571 -6.5734 0.8706 14 6 3.8820 -7.2007 2.1559 15 1 2.9412 -6.8957 2.5901 16 6 4.6482 -8.1638 2.7774 17 7 5.7939 -8.5347 2.2490 18 14 4.0589 -8.9417 4.3702 19 1 2.7550 -9.6140 4.1400 20 1 5.0558 -9.9410 4.8316 21 1 3.8970 -7.8890 5.4051 22 6 3.9059 -4.7806 -0.7064 23 7 2.1582 -1.1485 -0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6462 2.1340 -0.0004 28 1 4.4861 2.6891 -0.8847 29 1 6.1023 -0.1153 -1.0308 30 1 6.1415 0.7726 0.5114 31 1 6.0654 -1.0057 0.5100 32 1 2.2525 -3.3581 -0.3180 33 1 4.2992 -4.2501 1.8404 34 1 2.4844 -4.3191 1.9272 35 1 4.4751 -7.3462 0.1111 36 1 5.3145 -6.0804 1.0391 37 1 6.3328 -9.2126 2.6861 38 1 3.4525 -5.0138 -1.6698 39 1 4.9948 -4.7492 -0.7440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234866656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:05 Heat of formation + Delta-G solvation = -12.026761 kcal Electronic energy + Delta-G solvation = -21280.671315 eV Core-core repulsion = 17997.105543 eV Total energy + Delta-G solvation = -3283.565772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00660 -39.46234 -37.89160 -36.77591 -33.46050 -32.78510 -31.26749 -29.52776 -29.12256 -25.83186 -25.55411 -24.92967 -23.34514 -21.93663 -21.43344 -19.48412 -18.56045 -17.51666 -17.08156 -16.39222 -15.78266 -15.37503 -15.22655 -14.90284 -14.40383 -14.23659 -13.99038 -13.41614 -13.34283 -12.93554 -12.85910 -12.60941 -12.31190 -12.14588 -12.08634 -11.92911 -11.73683 -11.46294 -10.98423 -10.89029 -10.68329 -10.29927 -10.08852 -9.73623 -9.63722 -9.43164 -9.18067 -8.49489 -8.32654 -7.85905 -6.05306 -4.07391 0.92052 1.08025 3.03324 3.33392 3.36909 3.40397 3.48586 3.87433 4.07878 4.41749 4.71103 4.76044 4.84000 4.86020 4.96110 5.21837 5.29548 5.31002 5.41174 5.48083 5.57735 5.59326 5.68937 5.83662 5.85895 6.01359 6.05861 6.10159 6.13523 6.26979 6.42820 6.49290 6.64471 7.19604 7.22991 7.43006 7.60787 7.83836 7.86115 8.08289 8.39325 8.99322 9.57055 11.05963 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.003605 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.065293 B = 7764.561255 C = 8122.617556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.179 3.821 3 C -0.242 4.242 4 C 0.181 3.819 5 O -0.488 6.488 6 C -0.196 4.196 7 C -0.097 4.097 8 C 0.352 3.648 9 O -0.290 6.290 10 C 0.051 3.949 11 C 0.013 3.987 12 N -0.471 5.471 13 C 0.163 3.837 14 C -0.512 4.512 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.002 3.998 23 N -0.540 5.540 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.396 0.604 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.001 0.999 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 21.629 -7.573 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.042 3.958 3 C -0.263 4.263 4 C 0.129 3.871 5 O -0.298 6.298 6 C -0.199 4.199 7 C -0.154 4.154 8 C 0.172 3.828 9 O -0.195 6.195 10 C -0.006 4.006 11 C -0.116 4.116 12 N -0.196 5.196 13 C 0.037 3.963 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.127 4.127 23 N -0.266 5.266 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.157 0.843 28 H 0.254 0.746 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.096 20.179 -7.021 22.218 hybrid contribution 0.985 0.596 0.569 1.284 sum -5.111 20.775 -6.452 22.346 Atomic orbital electron populations 1.20751 0.88338 1.03613 1.03464 1.20760 0.96673 0.86687 0.91690 1.21973 0.93648 0.99837 1.10805 1.18220 0.89258 0.84694 0.94919 1.84717 1.74856 1.36527 1.33711 1.20180 0.98341 0.90459 1.10944 1.20450 0.89166 1.03515 1.02310 1.19453 0.87059 0.86417 0.89852 1.86389 1.35571 1.11720 1.85851 1.24967 0.96137 0.80295 0.99195 1.24161 1.02427 0.89951 0.95035 1.68579 1.42071 1.06054 1.02904 1.20216 0.88793 0.90741 0.96509 1.21051 1.05954 1.21382 1.06701 0.91986 1.24985 0.94861 0.96662 0.97957 1.69948 1.12483 1.31435 1.39830 0.86533 0.78472 0.78996 0.83273 1.20086 1.21267 1.20223 1.24241 0.99588 0.90826 0.98021 1.67167 1.08333 1.30576 1.20507 0.90005 0.90560 0.90098 0.84334 0.74636 0.91486 0.91153 0.90524 0.86251 0.90758 0.89840 0.94724 0.98127 0.92780 0.89533 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.17 36.01 0.37 -0.51 16 2 C 0.18 2.11 6.77 -82.65 -0.56 1.55 16 3 C -0.24 -2.53 9.69 -39.29 -0.38 -2.91 16 4 C 0.18 2.03 6.74 -38.85 -0.26 1.77 16 5 O -0.49 -4.31 12.70 -18.94 -0.24 -4.55 16 6 C -0.20 -2.58 5.92 -104.18 -0.62 -3.19 16 7 C -0.10 -1.12 9.61 36.01 0.35 -0.77 16 8 C 0.35 5.40 7.46 -17.17 -0.13 5.28 16 9 O -0.29 -4.91 9.20 -18.77 -0.17 -5.08 16 10 C 0.05 0.89 4.37 -25.80 -0.11 0.78 16 11 C 0.01 0.27 7.29 -2.77 -0.02 0.25 16 12 N -0.47 -10.59 6.25 -239.96 -1.50 -12.09 16 13 C 0.16 4.36 4.58 -4.98 -0.02 4.34 16 14 C -0.51 -14.75 8.84 -34.44 -0.30 -15.05 16 15 H 0.06 1.77 7.80 -52.48 -0.41 1.36 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.00 0.04 7.81 -2.77 -0.02 0.02 16 23 N -0.54 -7.97 8.50 -9.62 -0.08 -8.06 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.40 1.49 9.06 45.56 0.41 1.90 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.73 7.61 -51.93 -0.40 0.33 16 31 H 0.08 0.99 7.55 -51.93 -0.39 0.60 16 32 H 0.12 2.04 6.87 -51.93 -0.36 1.69 16 33 H 0.07 1.62 7.78 -51.93 -0.40 1.21 16 34 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.00 0.03 7.69 -51.93 -0.40 -0.37 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -32.96 330.96 -7.97 -40.92 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.86 Total: 0.08 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.81 Total: -6.91 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.85 Total: -46.40 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.41 Total: -9.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.96 -7.97 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234866656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.897 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds