Wall clock time and date at job start Tue Mar 31 2020 00:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37862 * 119.55696 * 2 1 4 4 C 1.39403 * 119.21662 * 180.02562 * 3 2 1 5 5 O 1.35745 * 120.81158 * 179.97438 * 4 3 2 6 6 C 1.39031 * 118.36934 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.47496 * 179.97438 * 6 4 3 8 8 C 1.38635 * 119.04819 * 359.97438 * 6 4 3 9 9 O 1.35688 * 119.65553 * 180.02562 * 8 6 4 10 10 C 1.42900 * 116.99924 * 179.97438 * 9 8 6 11 11 C 1.53941 * 113.73370 * 246.72768 * 10 9 8 12 12 N 1.47957 * 86.18189 * 221.92191 * 11 10 9 13 13 C 1.46892 * 111.00169 * 137.58146 * 12 11 10 14 14 C 1.50706 * 109.47117 * 70.63967 * 13 12 11 15 15 H 1.08004 * 119.99519 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00265 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47436 * 59.99565 * 18 16 14 20 20 H 1.48498 * 109.47347 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.47137 * 300.00038 * 18 16 14 22 22 C 1.47963 * 90.76080 * 24.68928 * 12 11 10 23 23 N 1.32027 * 119.55163 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.46807 * 270.00163 * 1 2 3 25 25 H 1.09003 * 109.46862 * 29.99607 * 1 2 3 26 26 H 1.08998 * 109.47085 * 150.00085 * 1 2 3 27 27 H 1.08000 * 120.39171 * 359.97438 * 3 2 1 28 28 H 0.96700 * 113.99573 * 270.01716 * 5 4 3 29 29 H 1.09001 * 109.47257 * 270.01745 * 7 6 4 30 30 H 1.09003 * 109.47401 * 30.01852 * 7 6 4 31 31 H 1.08998 * 109.47057 * 150.01876 * 7 6 4 32 32 H 1.08998 * 112.93735 * 18.43627 * 10 9 8 33 33 H 1.09000 * 113.75815 * 336.24559 * 11 10 9 34 34 H 1.09004 * 113.75569 * 107.60267 * 11 10 9 35 35 H 1.08994 * 109.47584 * 190.64190 * 13 12 11 36 36 H 1.09003 * 109.47362 * 310.64175 * 13 12 11 37 37 H 0.97002 * 119.99648 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.75508 * 220.99014 * 22 12 11 39 39 H 1.09003 * 113.75985 * 89.63186 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1992 0.0000 4 6 3.5811 1.1909 -0.0005 5 8 4.2833 2.3526 -0.0011 6 6 4.2344 -0.0363 -0.0016 7 6 5.7400 -0.1006 -0.0028 8 6 3.4809 -1.2000 -0.0016 9 8 4.1058 -2.4044 -0.0021 10 6 3.2744 -3.5667 -0.0014 11 6 3.3678 -4.3945 1.2931 12 7 3.3709 -5.5849 0.4144 13 6 4.3571 -6.5734 0.8706 14 6 3.8820 -7.2007 2.1559 15 1 2.9412 -6.8957 2.5901 16 6 4.6482 -8.1638 2.7774 17 7 5.7939 -8.5347 2.2490 18 14 4.0589 -8.9417 4.3702 19 1 2.7550 -9.6140 4.1400 20 1 5.0558 -9.9410 4.8316 21 1 3.8970 -7.8890 5.4051 22 6 3.9059 -4.7806 -0.7064 23 7 2.1582 -1.1485 -0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6462 2.1340 -0.0004 28 1 4.4861 2.6891 -0.8847 29 1 6.1023 -0.1153 -1.0308 30 1 6.1415 0.7726 0.5114 31 1 6.0654 -1.0057 0.5100 32 1 2.2525 -3.3581 -0.3180 33 1 4.2992 -4.2501 1.8404 34 1 2.4844 -4.3191 1.9272 35 1 4.4751 -7.3462 0.1111 36 1 5.3145 -6.0804 1.0391 37 1 6.3328 -9.2126 2.6861 38 1 3.4525 -5.0138 -1.6698 39 1 4.9948 -4.7492 -0.7440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234866656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:04 Heat of formation + Delta-G solvation = -38.758015 kcal Electronic energy + Delta-G solvation = -21281.830469 eV Core-core repulsion = 17997.105543 eV Total energy + Delta-G solvation = -3284.724926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04342 -40.86952 -38.93461 -37.88678 -35.07813 -34.27357 -32.19444 -31.11651 -30.24965 -27.52927 -27.03082 -26.19535 -24.56615 -23.26659 -22.71699 -20.99626 -19.68699 -18.65603 -18.38715 -18.08347 -16.97493 -16.84612 -16.40095 -16.22739 -15.88500 -15.70901 -15.18641 -14.51436 -14.29838 -14.20551 -13.93783 -13.89900 -13.76068 -13.63675 -13.39483 -13.09829 -12.98781 -12.84086 -12.70581 -12.56184 -12.24207 -11.78945 -11.57906 -11.48783 -11.24449 -10.71434 -10.64566 -10.34459 -9.74316 -9.32663 -8.26890 -6.38167 0.03210 0.14247 1.38056 1.41731 1.49853 1.87552 2.36958 2.55736 3.04483 3.06233 3.11035 3.19139 3.42820 3.83506 3.90341 3.94275 4.05690 4.30170 4.44115 4.45052 4.56185 4.60872 4.66150 4.72468 4.75760 4.81361 4.82868 4.86165 4.99651 5.02690 5.09389 5.14840 5.26819 5.44621 5.50869 5.69985 6.02518 6.22495 6.30386 6.68949 6.75373 6.86979 7.31662 8.84883 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.003605 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.065293 B = 7764.561255 C = 8122.617556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.165 3.835 3 C -0.230 4.230 4 C 0.189 3.811 5 O -0.488 6.488 6 C -0.211 4.211 7 C -0.093 4.093 8 C 0.319 3.681 9 O -0.303 6.303 10 C 0.079 3.921 11 C 0.010 3.990 12 N -0.483 5.483 13 C 0.179 3.821 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.972 3.028 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.268 1.268 22 C 0.004 3.996 23 N -0.565 5.565 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.172 0.828 28 H 0.420 0.580 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.009 0.991 36 H -0.025 1.025 37 H 0.267 0.733 38 H 0.111 0.889 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 23.851 -7.430 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.029 3.971 3 C -0.250 4.250 4 C 0.137 3.863 5 O -0.302 6.302 6 C -0.214 4.214 7 C -0.150 4.150 8 C 0.141 3.859 9 O -0.210 6.210 10 C 0.022 3.978 11 C -0.119 4.119 12 N -0.207 5.207 13 C 0.052 3.948 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.193 1.193 22 C -0.125 4.125 23 N -0.290 5.290 24 H 0.107 0.893 25 H 0.125 0.875 26 H 0.092 0.908 27 H 0.189 0.811 28 H 0.282 0.718 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.028 0.972 36 H -0.007 1.007 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.581 22.444 -6.908 24.676 hybrid contribution 1.436 0.110 0.466 1.514 sum -6.145 22.554 -6.442 24.247 Atomic orbital electron populations 1.20856 0.85997 1.04803 1.04222 1.21393 0.98237 0.86391 0.91112 1.22324 0.93434 1.00667 1.08577 1.18265 0.89732 0.84678 0.93670 1.84672 1.74519 1.35182 1.35860 1.20415 0.98951 0.90667 1.11361 1.20422 0.88600 1.02908 1.03041 1.19684 0.87873 0.86062 0.92273 1.86341 1.35698 1.12221 1.86701 1.24461 0.96419 0.80564 0.96329 1.24129 1.01499 0.90118 0.96201 1.68464 1.40891 1.06646 1.04697 1.19872 0.88657 0.90915 0.95373 1.21364 1.06105 1.22054 1.07701 0.92178 1.25935 0.94824 0.97002 1.01679 1.70072 1.13629 1.31959 1.41514 0.85401 0.78268 0.78173 0.78592 1.19136 1.20408 1.19317 1.24293 0.99468 0.90735 0.98008 1.67125 1.08168 1.32404 1.21331 0.89312 0.87498 0.90816 0.81057 0.71795 0.90135 0.89932 0.92738 0.85368 0.92772 0.89527 0.97244 1.00732 0.92443 0.87071 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.17 71.24 0.72 -0.71 16 2 C 0.16 3.54 6.77 42.44 0.29 3.83 16 3 C -0.23 -4.07 9.69 22.46 0.22 -3.86 16 4 C 0.19 3.77 6.74 22.74 0.15 3.93 16 5 O -0.49 -7.01 12.70 -90.69 -1.15 -8.16 16 6 C -0.21 -5.35 5.92 -19.58 -0.12 -5.46 16 7 C -0.09 -2.08 9.61 71.24 0.68 -1.39 16 8 C 0.32 9.77 7.46 84.71 0.63 10.41 16 9 O -0.30 -10.52 9.20 -90.06 -0.83 -11.35 16 10 C 0.08 2.83 4.37 31.24 0.14 2.97 16 11 C 0.01 0.41 7.29 86.41 0.63 1.04 16 12 N -0.48 -22.37 6.25 -916.29 -5.73 -28.10 16 13 C 0.18 9.99 4.58 85.56 0.39 10.38 16 14 C -0.53 -31.56 8.84 25.60 0.23 -31.34 16 15 H 0.06 3.49 7.80 -2.91 -0.02 3.47 16 16 C 0.00 0.25 5.46 84.65 0.46 0.71 16 17 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 18 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 C 0.00 0.14 7.81 86.40 0.67 0.81 16 23 N -0.56 -16.23 8.50 -297.15 -2.53 -18.76 16 24 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.11 0.83 8.07 -2.39 -0.02 0.81 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 28 H 0.42 1.61 9.06 -74.06 -0.67 0.94 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.60 7.61 -2.39 -0.02 1.58 16 31 H 0.05 1.45 7.55 -2.39 -0.02 1.43 16 32 H 0.13 4.37 6.87 -2.39 -0.02 4.35 16 33 H 0.05 2.49 7.78 -2.39 -0.02 2.48 16 34 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H -0.03 -1.50 7.69 -2.39 -0.02 -1.52 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.07 2.57 7.79 -2.39 -0.02 2.56 16 Total: -1.00 -72.74 330.96 -2.43 -75.17 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.39 Total: 9.53 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.11 Total: -8.68 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -7.97 Total: -103.81 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -1.98 Total: -19.51 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.74 -2.43 -75.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234866656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.411 kcal (2) G-P(sol) polarization free energy of solvation -72.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds