Wall clock time and date at job start Tue Mar 31 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35086 * 119.65094 * 2 1 4 4 C 1.41486 * 119.24812 * 180.02562 * 3 2 1 5 5 O 1.22239 * 120.68560 * 179.97438 * 4 3 2 6 6 C 1.41489 * 118.63591 * 0.02562 * 4 3 2 7 7 C 1.35094 * 119.24411 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.64712 * 180.02562 * 7 6 4 9 9 N 1.35602 * 120.70006 * 359.97438 * 7 6 4 10 10 C 1.46498 * 119.26238 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47033 * 88.91863 * 10 9 7 12 12 C 1.53004 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47020 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00272 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99836 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99838 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99865 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99812 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99966 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00019 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.46797 * 90.00236 * 20 18 16 22 22 H 1.48498 * 109.46954 * 210.00807 * 20 18 16 23 23 H 1.48499 * 109.46875 * 330.00454 * 20 18 16 24 24 H 1.09000 * 109.47253 * 95.45085 * 1 2 3 25 25 H 1.08997 * 109.47428 * 215.44791 * 1 2 3 26 26 H 1.08995 * 109.47217 * 335.44949 * 1 2 3 27 27 H 1.08000 * 120.38100 * 359.74527 * 3 2 1 28 28 H 1.08005 * 120.37734 * 179.97438 * 6 4 3 29 29 H 1.09007 * 109.47095 * 264.60651 * 8 7 6 30 30 H 1.08997 * 109.47839 * 24.60721 * 8 7 6 31 31 H 1.08999 * 109.47393 * 144.60955 * 8 7 6 32 32 H 1.08999 * 109.47199 * 208.91405 * 10 9 7 33 33 H 1.09000 * 109.47121 * 328.91719 * 10 9 7 34 34 H 1.09004 * 109.47429 * 299.99676 * 11 10 9 35 35 H 1.09000 * 109.47285 * 59.99956 * 11 10 9 36 36 H 1.08999 * 109.47174 * 299.99568 * 12 11 10 37 37 H 1.09000 * 109.47080 * 59.99840 * 12 11 10 38 38 H 0.97001 * 120.00031 * 359.97438 * 15 13 12 39 39 H 0.96997 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1752 1.1740 0.0000 4 6 3.5900 1.1640 -0.0006 5 8 4.2212 2.2108 -0.0010 6 6 4.2594 -0.0825 -0.0016 7 6 3.5331 -1.2216 -0.0016 8 6 4.2366 -2.5543 -0.0022 9 7 2.1777 -1.1785 0.0000 10 6 1.4213 -2.4331 0.0006 11 6 1.1830 -2.8843 1.4430 12 6 0.3925 -4.1943 1.4436 13 6 0.1573 -4.6383 2.8644 14 8 0.5806 -3.9728 3.7858 15 7 -0.5227 -5.7755 3.1111 16 6 -0.7372 -6.1792 4.4037 17 1 -0.3609 -5.5862 5.2241 18 6 -1.4378 -7.3519 4.6581 19 7 -1.6429 -7.7391 5.8969 20 14 -2.0880 -8.3780 3.2389 21 1 -1.0612 -9.3721 2.8358 22 1 -3.3222 -9.0857 3.6645 23 1 -2.3975 -7.4917 2.0883 24 1 -0.3634 -0.0976 -1.0230 25 1 -0.3634 -0.8371 0.5960 26 1 -0.3633 0.9347 0.4270 27 1 1.6358 2.1096 -0.0041 28 1 5.3387 -0.1229 -0.0025 29 1 4.3204 -2.9205 -1.0255 30 1 5.2327 -2.4396 0.4253 31 1 3.6656 -3.2669 0.5931 32 1 0.4628 -2.2797 -0.4951 33 1 1.9869 -3.1985 -0.5308 34 1 2.1416 -3.0377 1.9388 35 1 0.6175 -2.1188 1.9744 36 1 -0.5660 -4.0404 0.9480 37 1 0.9576 -4.9599 0.9121 38 1 -0.8610 -6.3080 2.3742 39 1 -2.1323 -8.5576 6.0745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261204005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:36 Heat of formation + Delta-G solvation = -50.509116 kcal Electronic energy + Delta-G solvation = -21126.460668 eV Core-core repulsion = 17841.226176 eV Total energy + Delta-G solvation = -3285.234492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50510 -38.68651 -37.96972 -34.71213 -34.49431 -33.94880 -31.85370 -31.36254 -29.56201 -27.25884 -27.14091 -24.72418 -22.51873 -22.32346 -20.98293 -19.48579 -18.46929 -17.75224 -17.40958 -16.12099 -15.66783 -15.52496 -15.46423 -15.01923 -14.48963 -13.88806 -13.70615 -13.60726 -13.58565 -13.48232 -13.32592 -13.07310 -12.82218 -12.60412 -12.51214 -12.25406 -12.16253 -11.90907 -11.53809 -11.31227 -11.29515 -10.85703 -10.70143 -10.09048 -9.70885 -9.38620 -9.28170 -8.71513 -8.31515 -7.96624 -6.42608 -3.95012 1.21323 1.24627 2.31237 2.91624 2.96655 3.06163 3.57902 3.77749 3.95933 3.99123 4.30273 4.33805 4.42128 4.71032 4.88286 4.91157 4.91606 5.04165 5.07111 5.08918 5.13262 5.19196 5.20554 5.40074 5.45741 5.52744 5.57589 5.57962 5.81309 5.91973 6.00377 6.02050 6.24526 6.48562 6.63844 6.87616 7.44028 8.01952 8.22439 8.45310 8.82212 9.29543 9.67499 10.70265 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.003269 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.880106 B = 8563.813148 C = 8659.666778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.173 3.827 3 C -0.296 4.296 4 C 0.392 3.608 5 O -0.544 6.544 6 C -0.296 4.296 7 C 0.173 3.827 8 C -0.131 4.131 9 N -0.468 5.468 10 C 0.079 3.921 11 C -0.120 4.120 12 C -0.131 4.131 13 C 0.445 3.555 14 O -0.578 6.578 15 N -0.586 5.586 16 C -0.310 4.310 17 H 0.120 0.880 18 C 0.043 3.957 19 N -0.878 5.878 20 Si 0.881 3.119 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.371 0.629 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 6.153 -17.549 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.065 3.935 3 C -0.320 4.320 4 C 0.286 3.714 5 O -0.433 6.433 6 C -0.320 4.320 7 C 0.065 3.935 8 C -0.188 4.188 9 N -0.155 5.155 10 C -0.043 4.043 11 C -0.158 4.158 12 C -0.172 4.172 13 C 0.231 3.769 14 O -0.462 6.462 15 N -0.224 5.224 16 C -0.439 4.439 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.517 5.517 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.195 1.195 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.204 0.796 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.723 6.782 -16.765 18.464 hybrid contribution -0.701 -1.095 -0.921 1.593 sum 3.022 5.688 -17.686 18.822 Atomic orbital electron populations 1.21182 0.88190 1.05459 1.03938 1.20386 0.94746 0.85041 0.93327 1.22255 0.97009 0.96975 1.15805 1.17209 0.88861 0.89218 0.76096 1.90765 1.70158 1.34936 1.47428 1.22260 1.01368 0.92617 1.15804 1.20388 0.82041 0.97744 0.93292 1.21194 1.01566 0.92107 1.03947 1.43107 1.04895 1.06797 1.60746 1.22407 0.97694 0.84231 0.99933 1.21724 1.02619 0.97798 0.93668 1.21441 1.01156 0.97415 0.97229 1.19716 0.83993 0.83187 0.89997 1.90583 1.54137 1.55433 1.46039 1.42245 1.50082 1.21837 1.08243 1.19454 1.33793 1.07424 0.83216 0.86281 1.25071 0.97331 0.97054 0.96634 1.69618 1.40154 1.23780 1.18151 0.86660 0.79740 0.80995 0.81908 1.19551 1.20080 1.19477 0.89495 0.89658 0.88904 0.83910 0.83904 0.89498 0.88905 0.89614 0.88339 0.88404 0.90134 0.90167 0.90001 0.89981 0.79584 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 8.87 36.00 0.32 -0.57 16 2 C 0.17 1.74 6.65 -82.05 -0.55 1.20 16 3 C -0.30 -3.76 9.59 -39.47 -0.38 -4.14 16 4 C 0.39 6.14 6.77 -37.11 -0.25 5.89 16 5 O -0.54 -10.69 17.90 4.70 0.08 -10.60 16 6 C -0.30 -3.77 9.59 -39.46 -0.38 -4.15 16 7 C 0.17 1.76 6.64 -82.05 -0.54 1.21 16 8 C -0.13 -0.91 8.88 36.00 0.32 -0.59 16 9 N -0.47 -4.45 2.60 -108.25 -0.28 -4.73 16 10 C 0.08 0.58 4.28 -4.04 -0.02 0.56 16 11 C -0.12 -1.34 4.46 -26.73 -0.12 -1.46 16 12 C -0.13 -1.62 5.70 -27.88 -0.16 -1.78 16 13 C 0.44 8.99 7.78 -10.98 -0.09 8.91 16 14 O -0.58 -14.40 15.56 5.55 0.09 -14.32 16 15 N -0.59 -12.86 5.09 -10.96 -0.06 -12.91 16 16 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 17 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -24.79 13.96 55.50 0.77 -24.02 16 20 Si 0.88 18.23 27.74 -169.99 -4.71 13.52 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -4.97 6.52 56.52 0.37 -4.60 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.58 5.88 -51.93 -0.31 0.27 16 26 H 0.09 0.58 8.01 -51.93 -0.42 0.16 16 27 H 0.14 1.66 8.04 -52.49 -0.42 1.24 16 28 H 0.14 1.67 8.04 -52.48 -0.42 1.24 16 29 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.09 0.59 8.01 -51.93 -0.42 0.17 16 31 H 0.09 0.59 5.68 -51.93 -0.30 0.30 16 32 H 0.10 0.53 6.48 -51.93 -0.34 0.19 16 33 H 0.10 0.53 6.61 -51.93 -0.34 0.18 16 34 H 0.08 1.04 7.03 -51.93 -0.37 0.67 16 35 H 0.08 1.04 7.25 -51.93 -0.38 0.66 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.37 7.00 5.76 -40.82 -0.24 6.77 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -36.35 323.52 -6.50 -42.86 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.18 Total: 7.74 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.09 Total: -2.41 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.44 Total: -41.66 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.17 Total: -24.92 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.71 Total: 13.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.35 -6.50 -42.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261204005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.653 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds