Wall clock time and date at job start Tue Mar 31 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35086 * 119.65094 * 2 1 4 4 C 1.41486 * 119.24812 * 180.02562 * 3 2 1 5 5 O 1.22239 * 120.68560 * 179.97438 * 4 3 2 6 6 C 1.41489 * 118.63591 * 0.02562 * 4 3 2 7 7 C 1.35094 * 119.24411 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.64712 * 180.02562 * 7 6 4 9 9 N 1.35602 * 120.70006 * 359.97438 * 7 6 4 10 10 C 1.46498 * 119.26238 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47033 * 88.91863 * 10 9 7 12 12 C 1.53004 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47020 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00272 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99836 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99838 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99865 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99812 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99966 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00019 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.46797 * 90.00236 * 20 18 16 22 22 H 1.48498 * 109.46954 * 210.00807 * 20 18 16 23 23 H 1.48499 * 109.46875 * 330.00454 * 20 18 16 24 24 H 1.09000 * 109.47253 * 95.45085 * 1 2 3 25 25 H 1.08997 * 109.47428 * 215.44791 * 1 2 3 26 26 H 1.08995 * 109.47217 * 335.44949 * 1 2 3 27 27 H 1.08000 * 120.38100 * 359.74527 * 3 2 1 28 28 H 1.08005 * 120.37734 * 179.97438 * 6 4 3 29 29 H 1.09007 * 109.47095 * 264.60651 * 8 7 6 30 30 H 1.08997 * 109.47839 * 24.60721 * 8 7 6 31 31 H 1.08999 * 109.47393 * 144.60955 * 8 7 6 32 32 H 1.08999 * 109.47199 * 208.91405 * 10 9 7 33 33 H 1.09000 * 109.47121 * 328.91719 * 10 9 7 34 34 H 1.09004 * 109.47429 * 299.99676 * 11 10 9 35 35 H 1.09000 * 109.47285 * 59.99956 * 11 10 9 36 36 H 1.08999 * 109.47174 * 299.99568 * 12 11 10 37 37 H 1.09000 * 109.47080 * 59.99840 * 12 11 10 38 38 H 0.97001 * 120.00031 * 359.97438 * 15 13 12 39 39 H 0.96997 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1752 1.1740 0.0000 4 6 3.5900 1.1640 -0.0006 5 8 4.2212 2.2108 -0.0010 6 6 4.2594 -0.0825 -0.0016 7 6 3.5331 -1.2216 -0.0016 8 6 4.2366 -2.5543 -0.0022 9 7 2.1777 -1.1785 0.0000 10 6 1.4213 -2.4331 0.0006 11 6 1.1830 -2.8843 1.4430 12 6 0.3925 -4.1943 1.4436 13 6 0.1573 -4.6383 2.8644 14 8 0.5806 -3.9728 3.7858 15 7 -0.5227 -5.7755 3.1111 16 6 -0.7372 -6.1792 4.4037 17 1 -0.3609 -5.5862 5.2241 18 6 -1.4378 -7.3519 4.6581 19 7 -1.6429 -7.7391 5.8969 20 14 -2.0880 -8.3780 3.2389 21 1 -1.0612 -9.3721 2.8358 22 1 -3.3222 -9.0857 3.6645 23 1 -2.3975 -7.4917 2.0883 24 1 -0.3634 -0.0976 -1.0230 25 1 -0.3634 -0.8371 0.5960 26 1 -0.3633 0.9347 0.4270 27 1 1.6358 2.1096 -0.0041 28 1 5.3387 -0.1229 -0.0025 29 1 4.3204 -2.9205 -1.0255 30 1 5.2327 -2.4396 0.4253 31 1 3.6656 -3.2669 0.5931 32 1 0.4628 -2.2797 -0.4951 33 1 1.9869 -3.1985 -0.5308 34 1 2.1416 -3.0377 1.9388 35 1 0.6175 -2.1188 1.9744 36 1 -0.5660 -4.0404 0.9480 37 1 0.9576 -4.9599 0.9121 38 1 -0.8610 -6.3080 2.3742 39 1 -2.1323 -8.5576 6.0745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261204005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:35 Heat of formation + Delta-G solvation = -77.328824 kcal Electronic energy + Delta-G solvation = -21127.623658 eV Core-core repulsion = 17841.226176 eV Total energy + Delta-G solvation = -3286.397482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37302 -40.29429 -39.11277 -36.18001 -35.34285 -35.24694 -33.74674 -32.45351 -30.19835 -28.47377 -27.90985 -26.30229 -23.42304 -23.30219 -21.86233 -21.18985 -20.16281 -18.61774 -18.40912 -17.53196 -16.74335 -16.63553 -16.57174 -16.44997 -15.54796 -15.18877 -15.08078 -14.76107 -14.56381 -14.29249 -14.21457 -14.17833 -13.95378 -13.66333 -13.44360 -13.22533 -13.08146 -12.95372 -12.57365 -12.47002 -12.36728 -12.11718 -11.94837 -11.71028 -11.49574 -10.44485 -10.41105 -10.23908 -10.19663 -9.00614 -8.40306 -6.02135 0.30475 0.31276 1.32063 1.38836 1.47801 1.52251 2.00290 2.25480 2.74125 2.97178 3.17469 3.30911 3.62990 3.76656 3.88413 3.92718 4.09091 4.22373 4.26935 4.33848 4.42447 4.56417 4.60974 4.65083 4.67451 4.78524 4.82965 4.83107 4.99728 5.08985 5.11891 5.17103 5.39926 5.53591 5.56437 5.85200 5.97250 5.99532 6.59420 6.90105 7.14282 7.42278 8.00461 8.77608 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.003269 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.880106 B = 8563.813148 C = 8659.666778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.193 3.807 3 C -0.329 4.329 4 C 0.365 3.635 5 O -0.614 6.614 6 C -0.330 4.330 7 C 0.193 3.807 8 C -0.131 4.131 9 N -0.461 5.461 10 C 0.081 3.919 11 C -0.117 4.117 12 C -0.116 4.116 13 C 0.443 3.557 14 O -0.635 6.635 15 N -0.590 5.590 16 C -0.332 4.332 17 H 0.050 0.950 18 C -0.019 4.019 19 N -0.938 5.938 20 Si 0.968 3.032 21 H -0.257 1.257 22 H -0.281 1.281 23 H -0.222 1.222 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.393 0.607 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 3.340 -22.036 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.083 3.917 3 C -0.353 4.353 4 C 0.265 3.735 5 O -0.510 6.510 6 C -0.353 4.353 7 C 0.083 3.917 8 C -0.188 4.188 9 N -0.147 5.147 10 C -0.039 4.039 11 C -0.156 4.156 12 C -0.157 4.157 13 C 0.232 3.768 14 O -0.521 6.521 15 N -0.231 5.231 16 C -0.462 4.462 17 H 0.068 0.932 18 C -0.217 4.217 19 N -0.579 5.579 20 Si 0.787 3.213 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.145 1.145 24 H 0.138 0.862 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.229 0.771 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.843 3.952 -21.282 21.725 hybrid contribution -0.123 -0.239 0.605 0.662 sum 1.720 3.713 -20.677 21.079 Atomic orbital electron populations 1.21351 0.85090 1.06162 1.06109 1.20841 0.96503 0.84340 0.89985 1.22193 0.95883 0.98545 1.18713 1.17854 0.90388 0.89533 0.75705 1.90710 1.71440 1.36873 1.51982 1.22198 1.01796 0.92638 1.18713 1.20833 0.82434 0.98401 0.89984 1.21359 1.01399 0.89890 1.06106 1.43499 1.04990 1.07703 1.58513 1.22654 0.99939 0.83672 0.97635 1.21641 1.01035 0.96967 0.95959 1.21475 1.04279 0.98589 0.91308 1.21357 0.80947 0.81393 0.93092 1.90575 1.55520 1.56814 1.49198 1.42085 1.51277 1.23057 1.06660 1.19010 1.35109 1.07740 0.84292 0.93164 1.26213 0.96898 0.98114 1.00470 1.69821 1.41563 1.24798 1.21697 0.85329 0.78562 0.79008 0.78364 1.18132 1.20607 1.14470 0.86250 0.88695 0.88556 0.83945 0.83976 0.86244 0.88587 0.88732 0.84667 0.84712 0.92384 0.92496 0.85679 0.85575 0.77134 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.87 71.23 0.63 -0.61 16 2 C 0.19 3.44 6.65 41.25 0.27 3.71 16 3 C -0.33 -8.57 9.59 22.34 0.21 -8.36 16 4 C 0.36 12.28 6.77 23.87 0.16 12.44 16 5 O -0.61 -26.66 17.90 -6.10 -0.11 -26.77 16 6 C -0.33 -8.61 9.59 22.35 0.21 -8.40 16 7 C 0.19 3.46 6.64 41.25 0.27 3.74 16 8 C -0.13 -1.28 8.88 71.23 0.63 -0.65 16 9 N -0.46 -7.08 2.60 -496.39 -1.29 -8.37 16 10 C 0.08 0.67 4.28 86.38 0.37 1.04 16 11 C -0.12 -2.10 4.46 30.59 0.14 -1.97 16 12 C -0.12 -2.17 5.70 29.85 0.17 -2.00 16 13 C 0.44 16.97 7.78 87.66 0.68 17.65 16 14 O -0.63 -32.16 15.56 -3.05 -0.05 -32.21 16 15 N -0.59 -24.67 5.09 -306.98 -1.56 -26.23 16 16 C -0.33 -18.41 10.16 84.04 0.85 -17.56 16 17 H 0.05 3.39 7.39 -2.91 -0.02 3.37 16 18 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 19 N -0.94 -54.98 13.96 21.66 0.30 -54.67 16 20 Si 0.97 35.59 27.74 68.60 1.90 37.50 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 22 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.22 -6.41 6.52 99.48 0.65 -5.76 16 24 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.80 5.88 -2.39 -0.01 0.78 16 26 H 0.10 0.93 8.01 -2.39 -0.02 0.91 16 27 H 0.14 3.53 8.04 -2.91 -0.02 3.50 16 28 H 0.14 3.54 8.04 -2.91 -0.02 3.52 16 29 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.10 0.96 8.01 -2.39 -0.02 0.94 16 31 H 0.09 0.84 5.68 -2.39 -0.01 0.82 16 32 H 0.14 0.31 6.48 -2.39 -0.02 0.29 16 33 H 0.13 0.31 6.61 -2.39 -0.02 0.29 16 34 H 0.06 1.32 7.03 -2.38 -0.02 1.31 16 35 H 0.06 1.31 7.25 -2.39 -0.02 1.29 16 36 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.39 12.88 5.76 -92.71 -0.53 12.35 16 39 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -93.50 323.52 4.76 -88.74 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.48 Total: 23.50 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.08 Total: -1.49 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -2.55 Total: -89.28 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: -0.16 Total: -58.98 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 1.90 Total: 37.50 kcal Total: -93.50 4.76 -88.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261204005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.415 kcal (2) G-P(sol) polarization free energy of solvation -93.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds