Wall clock time and date at job start Tue Mar 31 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34184 * 125.43720 * 2 1 4 4 C 1.47020 * 105.95357 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18976 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00375 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99932 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46956 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47121 * 294.99433 * 9 8 7 11 11 N 1.46498 * 109.47548 * 54.99760 * 9 8 7 12 12 C 1.36928 * 120.00412 * 204.99770 * 11 9 8 13 13 H 1.08010 * 119.99963 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00247 * 179.97438 * 12 11 9 15 15 N 1.31621 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00067 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47017 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46906 * 120.00193 * 16 14 12 19 19 H 1.48500 * 109.47288 * 240.00272 * 16 14 12 20 20 C 1.52999 * 109.46818 * 174.99848 * 9 8 7 21 21 C 1.53001 * 117.50085 * 248.74408 * 20 9 8 22 22 C 1.53001 * 117.49948 * 180.08463 * 20 9 8 23 23 C 1.36411 * 105.61474 * 359.97438 * 4 3 2 24 24 O 1.33658 * 108.40014 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.46926 * 89.99776 * 1 2 3 26 26 H 1.08996 * 109.47005 * 210.00028 * 1 2 3 27 27 H 1.09001 * 109.47134 * 330.00337 * 1 2 3 28 28 H 1.07999 * 127.02209 * 359.70047 * 3 2 1 29 29 H 0.97000 * 120.00222 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47273 * 299.99833 * 8 7 5 31 31 H 1.08996 * 109.46948 * 59.99582 * 8 7 5 32 32 H 0.96997 * 119.99550 * 25.00276 * 11 9 8 33 33 H 0.96992 * 119.99963 * 179.97438 * 15 14 12 34 34 H 1.09003 * 115.55167 * 34.41872 * 20 9 8 35 35 H 1.09000 * 117.49752 * 359.97438 * 21 20 9 36 36 H 1.08994 * 117.50184 * 145.02291 * 21 20 9 37 37 H 1.08995 * 117.50472 * 214.98064 * 22 20 9 38 38 H 1.09003 * 117.49571 * 0.02562 * 22 20 9 39 39 H 1.08001 * 125.80413 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1067 0.8075 0.0015 8 6 7.3309 1.6124 0.0018 9 6 8.5495 0.6872 0.0026 10 1 8.5759 0.1219 0.9342 11 7 8.4599 -0.2395 -1.1285 12 6 9.1009 -1.4483 -1.0758 13 1 9.6722 -1.7189 -0.2000 14 6 9.0155 -2.3265 -2.1474 15 7 8.3189 -1.9971 -3.2144 16 14 9.8894 -3.9760 -2.0750 17 1 10.5980 -4.1042 -0.7763 18 1 8.8935 -5.0699 -2.2052 19 1 10.8709 -4.0654 -3.1859 20 6 9.8246 1.5234 -0.1229 21 6 10.6179 1.4107 -1.4263 22 6 11.1599 0.7767 -0.1427 23 6 3.5790 -0.7581 0.0015 24 8 2.2852 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0045 29 1 6.1630 -0.1609 0.0030 30 1 7.3528 2.2407 -0.8886 31 1 7.3515 2.2419 0.8913 32 1 7.9466 0.0034 -1.9149 33 1 8.2596 -2.6106 -3.9633 34 1 9.7992 2.4961 0.3684 35 1 10.2316 0.7405 -2.1942 36 1 11.1147 2.3091 -1.7924 37 1 12.0131 1.2583 0.3350 38 1 11.1299 -0.3102 -0.0669 39 1 4.4103 -1.4476 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265352739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:54 Heat of formation + Delta-G solvation = 11.660320 kcal Electronic energy + Delta-G solvation = -21371.964114 eV Core-core repulsion = 18089.425491 eV Total energy + Delta-G solvation = -3282.538623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.49044 -39.12156 -37.56370 -34.47087 -33.29432 -33.05312 -32.10698 -30.72043 -28.25967 -26.60104 -24.29505 -23.34281 -22.06209 -21.44571 -21.00141 -19.70208 -18.87827 -17.74268 -17.18715 -16.27317 -15.99027 -15.53290 -15.17392 -14.70499 -14.51342 -14.24933 -13.57476 -13.52046 -13.28421 -13.15843 -12.91790 -12.89145 -12.70257 -12.07024 -11.85003 -11.31121 -11.18574 -10.92768 -10.87813 -10.53628 -10.12236 -9.80567 -9.69281 -9.68375 -9.46753 -9.18409 -9.02351 -8.68549 -8.49000 -7.10948 -5.87687 -3.18150 1.48890 2.08504 2.86149 3.35339 3.42353 3.44390 3.53294 3.67089 4.46529 4.57907 4.62296 4.80154 5.00333 5.24185 5.28022 5.35440 5.42447 5.49563 5.55747 5.60920 5.73361 5.77758 5.83723 5.97079 6.01977 6.04224 6.11062 6.37495 6.37651 6.44683 6.63891 6.73252 6.89001 6.99278 7.04266 7.26420 7.62457 7.94198 8.29318 8.58120 9.41837 9.95624 10.32027 11.33667 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.004908 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.518630 B = 5704.102085 C = 7137.426331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 C -0.163 4.163 4 C -0.230 4.230 5 C 0.583 3.417 6 O -0.552 6.552 7 N -0.708 5.708 8 C 0.120 3.880 9 C 0.192 3.808 10 H 0.057 0.943 11 N -0.718 5.718 12 C -0.241 4.241 13 H 0.072 0.928 14 C -0.007 4.007 15 N -0.927 5.927 16 Si 0.902 3.098 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.178 4.178 21 C -0.163 4.163 22 C -0.175 4.175 23 C 0.027 3.973 24 O -0.174 6.174 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.407 0.593 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.387 0.613 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 3.631 7.340 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.234 4.234 5 C 0.370 3.630 6 O -0.431 6.431 7 N -0.359 5.359 8 C -0.004 4.004 9 C 0.081 3.919 10 H 0.075 0.925 11 N -0.360 5.360 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.575 5.575 16 Si 0.733 3.267 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.199 4.199 21 C -0.200 4.200 22 C -0.212 4.212 23 C -0.043 4.043 24 O -0.070 6.070 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.174 0.826 29 H 0.244 0.756 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.884 4.043 7.378 12.980 hybrid contribution 0.751 -1.109 -0.404 1.399 sum -9.134 2.934 6.974 11.861 Atomic orbital electron populations 1.20290 0.84903 1.03973 1.03577 1.22269 0.94079 0.83826 1.07092 1.22453 0.90156 0.99494 1.06153 1.21542 0.94737 0.93314 1.13821 1.17251 0.82384 0.86962 0.76368 1.90736 1.87393 1.13758 1.51256 1.45817 1.04985 1.11222 1.73926 1.21594 0.83311 0.93836 1.01662 1.20000 0.89344 0.89632 0.92933 0.92467 1.42495 1.60843 1.16077 1.16569 1.19216 1.24551 0.92517 1.00856 0.90971 1.24711 1.00570 0.98608 0.96514 1.69668 1.44693 1.36662 1.06488 0.86211 0.78962 0.84260 0.77285 1.20571 1.21947 1.21898 1.23060 0.94279 0.99804 1.02782 1.22915 1.02819 1.01789 0.92483 1.22852 0.95324 1.00757 1.02307 1.24598 0.84066 0.95720 0.99950 1.83724 1.16608 1.35420 1.71258 0.90085 0.90544 0.89363 0.82604 0.75642 0.91554 0.91720 0.77903 0.93464 0.89588 0.86347 0.91276 0.91016 0.87941 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.40 36.01 0.37 -0.17 16 2 C -0.02 -0.29 7.28 -35.74 -0.26 -0.55 16 3 C -0.16 -2.27 10.90 -37.45 -0.41 -2.68 16 4 C -0.23 -3.59 6.31 -103.28 -0.65 -4.24 16 5 C 0.58 10.43 7.81 -12.54 -0.10 10.33 16 6 O -0.55 -11.49 16.98 5.27 0.09 -11.40 16 7 N -0.71 -11.92 5.38 -61.40 -0.33 -12.25 16 8 C 0.12 2.05 5.22 -4.04 -0.02 2.03 16 9 C 0.19 3.47 2.86 -67.93 -0.19 3.27 16 10 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 11 N -0.72 -15.63 3.08 -53.43 -0.16 -15.80 16 12 C -0.24 -5.86 8.15 -15.06 -0.12 -5.98 16 13 H 0.07 1.74 6.91 -52.48 -0.36 1.38 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -25.86 13.06 55.49 0.72 -25.14 16 16 Si 0.90 20.98 29.55 -169.99 -5.02 15.96 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 C -0.18 -3.07 5.70 -90.62 -0.52 -3.58 16 21 C -0.16 -3.03 9.74 -26.69 -0.26 -3.29 16 22 C -0.18 -3.09 9.87 -26.69 -0.26 -3.36 16 23 C 0.03 0.37 11.61 30.07 0.35 0.71 16 24 O -0.17 -2.33 10.52 7.66 0.08 -2.25 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.41 6.63 7.11 -40.82 -0.29 6.34 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.39 9.33 7.80 -40.82 -0.32 9.01 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.12 2.64 6.68 -51.93 -0.35 2.29 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 2.02 6.22 -51.93 -0.32 1.69 16 39 H 0.22 2.45 7.47 -52.49 -0.39 2.06 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -29.82 333.01 -7.17 -36.98 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -5.39 Total: 16.65 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.17 Total: -7.79 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.23 Total: -53.18 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.17 Total: -13.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.82 -7.17 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265352739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.644 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds