Wall clock time and date at job start Tue Mar 31 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34184 * 125.43720 * 2 1 4 4 C 1.47020 * 105.95357 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18976 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00375 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99932 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46956 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47121 * 294.99433 * 9 8 7 11 11 N 1.46498 * 109.47548 * 54.99760 * 9 8 7 12 12 C 1.36928 * 120.00412 * 204.99770 * 11 9 8 13 13 H 1.08010 * 119.99963 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00247 * 179.97438 * 12 11 9 15 15 N 1.31621 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00067 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47017 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46906 * 120.00193 * 16 14 12 19 19 H 1.48500 * 109.47288 * 240.00272 * 16 14 12 20 20 C 1.52999 * 109.46818 * 174.99848 * 9 8 7 21 21 C 1.53001 * 117.50085 * 248.74408 * 20 9 8 22 22 C 1.53001 * 117.49948 * 180.08463 * 20 9 8 23 23 C 1.36411 * 105.61474 * 359.97438 * 4 3 2 24 24 O 1.33658 * 108.40014 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.46926 * 89.99776 * 1 2 3 26 26 H 1.08996 * 109.47005 * 210.00028 * 1 2 3 27 27 H 1.09001 * 109.47134 * 330.00337 * 1 2 3 28 28 H 1.07999 * 127.02209 * 359.70047 * 3 2 1 29 29 H 0.97000 * 120.00222 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47273 * 299.99833 * 8 7 5 31 31 H 1.08996 * 109.46948 * 59.99582 * 8 7 5 32 32 H 0.96997 * 119.99550 * 25.00276 * 11 9 8 33 33 H 0.96992 * 119.99963 * 179.97438 * 15 14 12 34 34 H 1.09003 * 115.55167 * 34.41872 * 20 9 8 35 35 H 1.09000 * 117.49752 * 359.97438 * 21 20 9 36 36 H 1.08994 * 117.50184 * 145.02291 * 21 20 9 37 37 H 1.08995 * 117.50472 * 214.98064 * 22 20 9 38 38 H 1.09003 * 117.49571 * 0.02562 * 22 20 9 39 39 H 1.08001 * 125.80413 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1067 0.8075 0.0015 8 6 7.3309 1.6124 0.0018 9 6 8.5495 0.6872 0.0026 10 1 8.5759 0.1219 0.9342 11 7 8.4599 -0.2395 -1.1285 12 6 9.1009 -1.4483 -1.0758 13 1 9.6722 -1.7189 -0.2000 14 6 9.0155 -2.3265 -2.1474 15 7 8.3189 -1.9971 -3.2144 16 14 9.8894 -3.9760 -2.0750 17 1 10.5980 -4.1042 -0.7763 18 1 8.8935 -5.0699 -2.2052 19 1 10.8709 -4.0654 -3.1859 20 6 9.8246 1.5234 -0.1229 21 6 10.6179 1.4107 -1.4263 22 6 11.1599 0.7767 -0.1427 23 6 3.5790 -0.7581 0.0015 24 8 2.2852 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0045 29 1 6.1630 -0.1609 0.0030 30 1 7.3528 2.2407 -0.8886 31 1 7.3515 2.2419 0.8913 32 1 7.9466 0.0034 -1.9149 33 1 8.2596 -2.6106 -3.9633 34 1 9.7992 2.4961 0.3684 35 1 10.2316 0.7405 -2.1942 36 1 11.1147 2.3091 -1.7924 37 1 12.0131 1.2583 0.3350 38 1 11.1299 -0.3102 -0.0669 39 1 4.4103 -1.4476 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265352739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:54 Heat of formation + Delta-G solvation = -6.902553 kcal Electronic energy + Delta-G solvation = -21372.769061 eV Core-core repulsion = 18089.425491 eV Total energy + Delta-G solvation = -3283.343570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54634 -40.55465 -39.08583 -35.93295 -35.07489 -34.08554 -33.20451 -32.32305 -29.83979 -27.52093 -25.84900 -24.98713 -23.44765 -22.87065 -22.09104 -21.08505 -20.28415 -19.23372 -18.65798 -17.33083 -17.27957 -16.97481 -16.65348 -16.31781 -16.00066 -15.60157 -15.23027 -14.94583 -14.52251 -14.21510 -13.98071 -13.80355 -13.76892 -13.66206 -12.95532 -12.88676 -12.71988 -12.62847 -12.55166 -12.09662 -11.91624 -11.58970 -11.23514 -11.03571 -10.84584 -10.83003 -10.61166 -10.06379 -9.53708 -8.99033 -7.87541 -5.15388 0.33674 1.03894 1.49100 1.52746 1.59257 1.87943 2.20473 2.34481 2.59268 3.14482 3.47483 3.63205 3.67508 3.88144 3.98405 4.05611 4.27473 4.34263 4.40844 4.50293 4.52759 4.60391 4.69336 4.74925 4.77672 4.89580 4.93845 4.98037 5.10654 5.19229 5.24925 5.41710 5.42770 5.52681 5.68329 5.69338 6.00624 6.32288 6.56111 7.18966 7.41041 8.11054 8.36971 9.34944 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.004908 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.518630 B = 5704.102085 C = 7137.426331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.011 4.011 3 C -0.189 4.189 4 C -0.260 4.260 5 C 0.582 3.418 6 O -0.587 6.587 7 N -0.704 5.704 8 C 0.128 3.872 9 C 0.194 3.806 10 H 0.064 0.936 11 N -0.720 5.720 12 C -0.217 4.217 13 H 0.078 0.922 14 C -0.064 4.064 15 N -0.964 5.964 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.298 1.298 19 H -0.305 1.305 20 C -0.169 4.169 21 C -0.174 4.174 22 C -0.168 4.168 23 C 0.037 3.963 24 O -0.177 6.177 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.160 0.840 29 H 0.410 0.590 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.374 0.626 33 H 0.247 0.753 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 3.633 8.943 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.209 4.209 4 C -0.264 4.264 5 C 0.371 3.629 6 O -0.470 6.470 7 N -0.354 5.354 8 C 0.004 3.996 9 C 0.084 3.916 10 H 0.082 0.918 11 N -0.360 5.360 12 C -0.348 4.348 13 H 0.096 0.904 14 C -0.257 4.257 15 N -0.615 5.615 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.226 1.226 19 H -0.233 1.233 20 C -0.190 4.190 21 C -0.212 4.212 22 C -0.205 4.205 23 C -0.034 4.034 24 O -0.073 6.073 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.178 0.822 29 H 0.247 0.753 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.228 4.041 9.035 14.233 hybrid contribution 0.842 -1.061 -0.848 1.598 sum -9.386 2.980 8.187 12.806 Atomic orbital electron populations 1.20540 0.81518 1.05674 1.04984 1.23045 0.95756 0.82746 1.04428 1.22627 0.89771 1.00460 1.08036 1.21545 0.94622 0.94171 1.16104 1.17568 0.83114 0.86721 0.75485 1.90703 1.87904 1.15239 1.53159 1.45778 1.04854 1.11289 1.73482 1.21511 0.82889 0.93526 1.01719 1.20126 0.90412 0.89404 0.91625 0.91834 1.42547 1.60306 1.16105 1.17091 1.19462 1.22538 0.92716 1.00124 0.90428 1.25278 1.02219 1.01419 0.96762 1.69804 1.47105 1.37449 1.07183 0.85339 0.77633 0.81222 0.77145 1.19175 1.22574 1.23270 1.23053 0.93338 1.00753 1.01873 1.22776 1.04135 1.02143 0.92111 1.22844 0.96543 0.99645 1.01504 1.24860 0.84733 0.95244 0.98541 1.83761 1.16534 1.36011 1.71002 0.88666 0.89057 0.87444 0.82215 0.75304 0.93023 0.90051 0.79384 0.94432 0.86719 0.90416 0.89207 0.88061 0.90192 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.40 71.24 0.74 -0.14 16 2 C -0.01 -0.26 7.28 24.76 0.18 -0.08 16 3 C -0.19 -5.19 10.90 23.65 0.26 -4.93 16 4 C -0.26 -8.11 6.31 -18.99 -0.12 -8.23 16 5 C 0.58 20.96 7.81 86.65 0.68 21.63 16 6 O -0.59 -24.77 16.98 -4.05 -0.07 -24.84 16 7 N -0.70 -23.49 5.38 -466.42 -2.51 -26.00 16 8 C 0.13 4.25 5.22 86.38 0.45 4.70 16 9 C 0.19 6.75 2.86 44.99 0.13 6.88 16 10 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 11 N -0.72 -31.31 3.08 -322.95 -0.99 -32.30 16 12 C -0.22 -10.47 8.15 84.03 0.69 -9.79 16 13 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 14 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 15 N -0.96 -54.98 13.06 21.65 0.28 -54.70 16 16 Si 0.96 43.44 29.55 68.60 2.03 45.47 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 C -0.17 -5.46 5.70 -10.79 -0.06 -5.52 16 21 C -0.17 -6.28 9.74 30.62 0.30 -5.98 16 22 C -0.17 -5.56 9.87 30.62 0.30 -5.26 16 23 C 0.04 0.97 11.61 67.39 0.78 1.75 16 24 O -0.18 -4.49 10.52 4.48 0.05 -4.44 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.41 13.21 7.11 -92.71 -0.66 12.55 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.37 18.36 7.80 -92.71 -0.72 17.64 16 33 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.11 3.13 8.11 -2.39 -0.02 3.11 16 35 H 0.08 3.50 6.68 -2.39 -0.02 3.48 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 3.02 6.22 -2.39 -0.01 3.00 16 39 H 0.23 5.07 7.47 -2.91 -0.02 5.05 16 Total: -1.00 -64.76 333.01 3.27 -61.49 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -0.30 Total: 43.17 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.79 Total: -7.86 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.22 Total: -113.00 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.02 Total: -29.28 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.76 3.27 -61.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265352739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.589 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds