Wall clock time and date at job start Tue Mar 31 2020 00:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34184 * 125.43720 * 2 1 4 4 C 1.47020 * 105.95357 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18976 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00375 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99932 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46956 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47127 * 65.00135 * 9 8 7 11 11 N 1.46501 * 109.47255 * 304.99597 * 9 8 7 12 12 C 1.36935 * 120.00174 * 155.00517 * 11 9 8 13 13 H 1.08003 * 119.99933 * 359.97438 * 12 11 9 14 14 C 1.38812 * 120.00241 * 180.02562 * 12 11 9 15 15 N 1.31625 * 119.99468 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46954 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46983 * 119.99662 * 16 14 12 19 19 H 1.48496 * 109.47111 * 239.99454 * 16 14 12 20 20 C 1.53001 * 109.46949 * 184.99717 * 9 8 7 21 21 C 1.52994 * 117.50291 * 248.74525 * 20 9 8 22 22 C 1.52996 * 117.50225 * 180.08293 * 20 9 8 23 23 C 1.36411 * 105.61474 * 359.97438 * 4 3 2 24 24 O 1.33658 * 108.40014 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.46926 * 89.99776 * 1 2 3 26 26 H 1.08996 * 109.47005 * 210.00028 * 1 2 3 27 27 H 1.09001 * 109.47134 * 330.00337 * 1 2 3 28 28 H 1.07999 * 127.02209 * 359.70047 * 3 2 1 29 29 H 0.97000 * 120.00222 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47273 * 299.99833 * 8 7 5 31 31 H 1.08996 * 109.46948 * 59.99582 * 8 7 5 32 32 H 0.97005 * 119.99987 * 335.00405 * 11 9 8 33 33 H 0.97006 * 119.99151 * 180.02562 * 15 14 12 34 34 H 1.08998 * 115.54953 * 34.41797 * 20 9 8 35 35 H 1.09002 * 117.49561 * 0.02562 * 21 20 9 36 36 H 1.09002 * 117.50487 * 145.01742 * 21 20 9 37 37 H 1.08994 * 117.50507 * 214.98406 * 22 20 9 38 38 H 1.09009 * 117.49499 * 359.97438 * 22 20 9 39 39 H 1.08001 * 125.80413 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1067 0.8075 0.0015 8 6 7.3309 1.6124 0.0018 9 6 8.5495 0.6872 0.0026 10 1 8.5766 0.1213 -0.9286 11 7 8.4590 -0.2387 1.1343 12 6 9.1000 -1.4476 1.0828 13 1 9.6721 -1.7187 0.2078 14 6 9.0139 -2.3252 2.1549 15 7 8.3163 -1.9949 3.2212 16 14 9.8878 -3.9746 2.0844 17 1 10.5974 -4.1037 0.7863 18 1 10.8684 -4.0632 3.1961 19 1 8.8919 -5.0684 2.2145 20 6 9.8245 1.5234 0.1285 21 6 10.7511 1.5864 -1.0873 22 6 11.1600 0.7771 0.1460 23 6 3.5790 -0.7581 0.0015 24 8 2.2852 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0045 29 1 6.1630 -0.1609 0.0030 30 1 7.3528 2.2407 -0.8886 31 1 7.3515 2.2419 0.8913 32 1 7.9449 0.0046 1.9201 33 1 8.2564 -2.6081 3.9705 34 1 9.7405 2.4190 0.7441 35 1 10.4521 1.0324 -1.9771 36 1 11.2769 2.5233 -1.2715 37 1 11.9547 1.1818 0.7727 38 1 11.1302 -0.3098 0.0681 39 1 4.4103 -1.4476 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265352740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:58 Heat of formation + Delta-G solvation = -11.154684 kcal Electronic energy + Delta-G solvation = -21251.454590 eV Core-core repulsion = 17967.926634 eV Total energy + Delta-G solvation = -3283.527956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.54863 -40.54949 -38.96250 -36.11258 -35.18029 -34.08667 -33.22699 -32.40849 -29.75127 -27.51618 -25.87773 -24.84271 -23.23549 -22.99307 -22.09999 -21.35552 -20.50357 -19.26158 -18.64678 -17.32869 -17.24158 -16.94227 -16.78166 -16.13629 -16.00186 -15.57445 -15.23857 -14.93609 -14.74494 -14.18194 -13.98563 -13.82178 -13.73768 -13.67556 -12.98663 -12.91894 -12.74219 -12.63423 -12.38560 -12.24958 -11.94414 -11.72456 -11.26338 -11.00293 -10.88207 -10.84849 -10.75891 -10.07774 -9.53891 -8.99541 -7.87850 -5.15730 0.33216 1.03711 1.49512 1.52492 1.59685 1.87690 2.19257 2.33769 2.58738 3.08911 3.48987 3.62890 3.67227 3.79244 3.99734 4.04339 4.17939 4.35264 4.38795 4.40610 4.51460 4.61275 4.67846 4.75179 4.77320 4.86392 4.89460 4.91514 5.10521 5.15555 5.17167 5.41363 5.42131 5.45878 5.50872 5.63588 6.00404 6.31597 6.55045 7.17923 7.40191 8.10418 8.36421 9.35046 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.004946 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.849379 B = 5659.679600 C = 7220.601648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.011 4.011 3 C -0.189 4.189 4 C -0.260 4.260 5 C 0.582 3.418 6 O -0.587 6.587 7 N -0.704 5.704 8 C 0.128 3.872 9 C 0.198 3.802 10 H 0.061 0.939 11 N -0.724 5.724 12 C -0.217 4.217 13 H 0.079 0.921 14 C -0.068 4.068 15 N -0.967 5.967 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.304 1.304 19 H -0.297 1.297 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.173 4.173 23 C 0.037 3.963 24 O -0.177 6.177 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.160 0.840 29 H 0.410 0.590 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.372 0.628 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 3.564 -9.687 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.209 4.209 4 C -0.265 4.265 5 C 0.371 3.629 6 O -0.470 6.470 7 N -0.354 5.354 8 C 0.003 3.997 9 C 0.089 3.911 10 H 0.079 0.921 11 N -0.363 5.363 12 C -0.349 4.349 13 H 0.096 0.904 14 C -0.260 4.260 15 N -0.618 5.618 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.232 1.232 19 H -0.225 1.225 20 C -0.196 4.196 21 C -0.199 4.199 22 C -0.210 4.210 23 C -0.034 4.034 24 O -0.073 6.073 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.178 0.822 29 H 0.247 0.753 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.204 0.796 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.130 3.973 -9.777 14.629 hybrid contribution 0.862 -0.992 0.930 1.610 sum -9.268 2.981 -8.848 13.155 Atomic orbital electron populations 1.20541 0.81500 1.05533 1.05139 1.23048 0.95761 0.82738 1.04408 1.22626 0.89743 1.00471 1.08044 1.21540 0.94606 0.94174 1.16136 1.17575 0.83103 0.86731 0.75469 1.90703 1.87900 1.15232 1.53143 1.45777 1.04854 1.11290 1.73518 1.21524 0.82917 0.93521 1.01717 1.20145 0.90251 0.89168 0.91501 0.92135 1.42589 1.60253 1.16134 1.17351 1.19497 1.22573 0.92615 1.00174 0.90351 1.25338 1.02313 1.01677 0.96709 1.69821 1.47164 1.37547 1.07259 0.85289 0.77627 0.80931 0.77209 1.19063 1.23181 1.22455 1.22916 0.93017 1.01154 1.02492 1.23035 1.02878 1.02146 0.91882 1.22736 0.97695 0.98990 1.01600 1.24860 0.84744 0.95240 0.98527 1.83761 1.16518 1.36007 1.70994 0.88214 0.89266 0.87662 0.82202 0.75301 0.90079 0.93048 0.79550 0.94406 0.88923 0.88501 0.87590 0.89632 0.89975 0.75161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.40 71.24 0.74 -0.14 16 2 C -0.01 -0.25 7.28 24.76 0.18 -0.07 16 3 C -0.19 -5.20 10.90 23.65 0.26 -4.94 16 4 C -0.26 -8.15 6.31 -18.99 -0.12 -8.27 16 5 C 0.58 21.10 7.81 86.65 0.68 21.78 16 6 O -0.59 -24.88 16.98 -4.05 -0.07 -24.95 16 7 N -0.70 -23.79 5.38 -466.42 -2.51 -26.30 16 8 C 0.13 4.31 5.22 86.38 0.45 4.76 16 9 C 0.20 7.03 2.70 44.99 0.12 7.16 16 10 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 11 N -0.72 -32.30 4.54 -322.94 -1.47 -33.77 16 12 C -0.22 -10.67 8.63 84.03 0.73 -9.95 16 13 H 0.08 3.72 6.91 -2.91 -0.02 3.70 16 14 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 15 N -0.97 -55.86 13.06 21.65 0.28 -55.58 16 16 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 20 C -0.17 -5.73 5.36 -10.80 -0.06 -5.79 16 21 C -0.16 -4.35 10.18 30.62 0.31 -4.04 16 22 C -0.17 -5.78 9.78 30.62 0.30 -5.48 16 23 C 0.04 0.97 11.61 67.39 0.78 1.76 16 24 O -0.18 -4.49 10.52 4.48 0.05 -4.44 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 29 H 0.41 13.39 7.11 -92.71 -0.66 12.73 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.37 18.67 7.80 -92.70 -0.72 17.95 16 33 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 34 H 0.09 3.03 8.11 -2.39 -0.02 3.01 16 35 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 36 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.08 3.12 6.23 -2.38 -0.01 3.11 16 39 H 0.23 5.10 7.47 -2.91 -0.02 5.08 16 Total: -1.00 -66.00 335.92 2.84 -63.16 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.31 Total: 42.58 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.84 Total: -6.36 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -3.69 Total: -115.65 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.02 Total: -29.39 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.00 2.84 -63.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265352740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.003 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds