Wall clock time and date at job start Tue Mar 31 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47287 * 295.00204 * 11 10 9 13 13 N 1.46498 * 109.47307 * 55.00085 * 11 10 9 14 14 C 1.36939 * 120.00455 * 205.00222 * 13 11 10 15 15 H 1.07995 * 119.99519 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00072 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00300 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47009 * 59.99984 * 18 16 14 20 20 H 1.48498 * 109.47442 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47377 * 300.00334 * 18 16 14 22 22 C 1.52997 * 109.47123 * 175.00202 * 11 10 9 23 23 C 1.53002 * 117.49946 * 248.74871 * 22 11 10 24 24 C 1.53003 * 117.49969 * 180.08638 * 22 11 10 25 25 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 28 28 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 29 29 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 30 30 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 31 31 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 32 32 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 33 33 H 0.97002 * 119.99580 * 24.99602 * 13 11 10 34 34 H 0.97004 * 120.00517 * 180.02562 * 17 16 14 35 35 H 1.09001 * 115.55204 * 34.41538 * 22 11 10 36 36 H 1.09006 * 117.49685 * 359.97438 * 23 22 11 37 37 H 1.08998 * 117.50069 * 145.01991 * 23 22 11 38 38 H 1.08995 * 117.50232 * 214.97382 * 24 22 11 39 39 H 1.09000 * 117.49781 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 1 4.1359 -5.6676 -0.9622 13 7 4.4497 -5.4671 1.1018 14 6 5.7883 -5.7507 1.0487 15 1 6.2060 -6.2219 0.1713 16 6 6.6083 -5.4326 2.1226 17 7 6.0991 -4.8589 3.1921 18 14 8.4342 -5.8202 2.0504 19 1 9.0479 -5.1012 0.9051 20 1 9.0829 -5.3853 3.3134 21 1 8.6234 -7.2827 1.8754 22 6 3.1308 -7.2588 0.0860 23 6 3.4562 -7.9971 1.3860 24 6 4.2158 -8.3375 0.1013 25 1 -0.3633 -0.0057 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5089 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 0.0072 30 1 3.7436 -3.2746 -0.0186 31 1 1.7610 -5.0832 0.8616 32 1 1.7609 -5.0735 -0.9183 33 1 4.0744 -5.0442 1.8900 34 1 6.6722 -4.6362 3.9424 35 1 2.1890 -7.4993 -0.4072 36 1 3.9936 -7.4452 2.1573 37 1 2.7286 -8.7236 1.7478 38 1 3.9877 -9.2877 -0.3813 39 1 5.2527 -8.0095 0.0271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266398940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:17 Heat of formation + Delta-G solvation = 13.735601 kcal Electronic energy + Delta-G solvation = -21649.036645 eV Core-core repulsion = 18366.588012 eV Total energy + Delta-G solvation = -3282.448632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.59458 -39.19523 -37.59649 -34.75784 -33.86875 -33.21842 -31.08528 -30.25246 -28.43474 -27.19131 -23.99475 -23.14275 -22.08257 -21.50782 -20.86193 -19.88808 -19.04933 -17.96326 -17.16947 -16.27590 -15.92504 -15.65356 -15.17683 -14.68277 -14.43754 -14.05716 -13.64338 -13.49912 -13.10937 -13.01210 -12.87262 -12.84653 -12.46479 -12.07139 -11.74074 -11.30956 -11.17877 -10.88072 -10.85133 -10.53487 -10.15460 -9.92909 -9.67626 -9.65684 -9.46707 -9.17797 -8.98562 -8.83038 -8.40784 -7.07677 -5.83582 -3.14066 1.20495 2.39043 2.86514 3.38968 3.40909 3.44506 3.45265 3.57475 4.49305 4.63118 4.76785 4.81698 5.05259 5.35167 5.46591 5.47250 5.55646 5.57595 5.72821 5.75529 5.79916 5.84782 5.96272 6.03179 6.04549 6.08732 6.17389 6.38549 6.41663 6.46991 6.63904 6.71870 6.83131 6.97066 7.00828 7.27946 7.64734 7.86965 8.33089 8.41313 9.45498 9.98929 10.35037 11.37799 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.005283 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.365926 B = 5298.561634 C = 6672.005099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.098 4.098 3 C -0.230 4.230 4 C -0.005 4.005 5 O -0.155 6.155 6 C -0.075 4.075 7 C 0.598 3.402 8 O -0.533 6.533 9 N -0.699 5.699 10 C 0.118 3.882 11 C 0.191 3.809 12 H 0.058 0.942 13 N -0.717 5.717 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.175 4.175 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.153 0.847 29 H 0.208 0.792 30 H 0.415 0.585 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 7.619 -7.249 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.249 4.249 4 C -0.076 4.076 5 O -0.050 6.050 6 C -0.127 4.127 7 C 0.384 3.616 8 O -0.414 6.414 9 N -0.350 5.350 10 C -0.006 4.006 11 C 0.080 3.920 12 H 0.076 0.924 13 N -0.359 5.359 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.224 0.776 30 H 0.252 0.748 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.221 0.779 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.627 7.142 -7.273 12.732 hybrid contribution 1.434 0.206 0.377 1.497 sum -6.193 7.348 -6.896 11.828 Atomic orbital electron populations 1.20384 0.88424 1.03243 1.02753 1.20585 0.97533 0.91015 1.00931 1.21684 0.92487 0.99944 1.10751 1.24343 0.99852 0.80869 1.02507 1.84144 1.28312 1.22483 1.70058 1.22003 0.81452 0.95055 1.14220 1.16538 0.85790 0.81914 0.77380 1.90800 1.15831 1.82504 1.52222 1.45923 1.10701 1.06070 1.72293 1.21666 0.97648 0.79451 1.01820 1.19998 0.89522 0.89420 0.93023 0.92433 1.42464 1.04996 1.72250 1.16170 1.19110 0.83979 1.33478 1.00639 0.91101 1.24705 0.97853 1.01280 0.96498 1.69646 1.34728 1.46915 1.06262 0.86343 0.85599 0.77995 0.76675 1.21313 1.21794 1.21245 1.23062 0.98618 0.95416 1.02847 1.22916 1.02483 1.02036 0.92533 1.22849 0.98465 0.97637 1.02260 0.91010 0.89532 0.91846 0.82948 0.77572 0.74755 0.91298 0.91468 0.77911 0.93393 0.89565 0.86336 0.91271 0.91017 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.82 36.01 0.35 -0.79 16 2 C -0.10 -1.39 6.20 -104.43 -0.65 -2.04 16 3 C -0.23 -2.68 10.83 -39.89 -0.43 -3.11 16 4 C -0.01 -0.06 12.08 29.63 0.36 0.29 16 5 O -0.16 -2.41 10.40 5.02 0.05 -2.35 16 6 C -0.08 -1.23 7.13 -36.80 -0.26 -1.49 16 7 C 0.60 10.64 7.79 -12.86 -0.10 10.54 16 8 O -0.53 -10.24 14.74 5.20 0.08 -10.16 16 9 N -0.70 -12.25 5.38 -61.62 -0.33 -12.58 16 10 C 0.12 2.01 5.22 -4.04 -0.02 1.99 16 11 C 0.19 3.52 2.86 -67.93 -0.19 3.33 16 12 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 13 N -0.72 -16.06 3.08 -53.43 -0.16 -16.23 16 14 C -0.24 -6.04 8.16 -15.06 -0.12 -6.16 16 15 H 0.07 1.75 6.91 -52.49 -0.36 1.39 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 18 Si 0.90 21.41 29.55 -169.99 -5.02 16.38 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.18 -3.08 5.70 -90.62 -0.52 -3.60 16 23 C -0.16 -3.04 9.74 -26.69 -0.26 -3.30 16 24 C -0.18 -3.12 9.87 -26.69 -0.26 -3.38 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.21 6.44 -51.93 -0.33 0.87 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.21 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.42 7.59 7.89 -40.82 -0.32 7.27 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 9.57 7.80 -40.82 -0.32 9.25 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 36 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.10 2.04 6.22 -51.93 -0.32 1.72 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -29.01 329.83 -7.27 -36.27 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -5.37 Total: 17.42 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.20 Total: -7.98 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.23 Total: -54.56 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.13 Total: -12.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.01 -7.27 -36.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.010 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds