Wall clock time and date at job start Tue Mar 31 2020 01:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47287 * 295.00204 * 11 10 9 13 13 N 1.46498 * 109.47307 * 55.00085 * 11 10 9 14 14 C 1.36939 * 120.00455 * 205.00222 * 13 11 10 15 15 H 1.07995 * 119.99519 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00072 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00300 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47009 * 59.99984 * 18 16 14 20 20 H 1.48498 * 109.47442 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47377 * 300.00334 * 18 16 14 22 22 C 1.52997 * 109.47123 * 175.00202 * 11 10 9 23 23 C 1.53002 * 117.49946 * 248.74871 * 22 11 10 24 24 C 1.53003 * 117.49969 * 180.08638 * 22 11 10 25 25 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 28 28 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 29 29 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 30 30 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 31 31 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 32 32 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 33 33 H 0.97002 * 119.99580 * 24.99602 * 13 11 10 34 34 H 0.97004 * 120.00517 * 180.02562 * 17 16 14 35 35 H 1.09001 * 115.55204 * 34.41538 * 22 11 10 36 36 H 1.09006 * 117.49685 * 359.97438 * 23 22 11 37 37 H 1.08998 * 117.50069 * 145.01991 * 23 22 11 38 38 H 1.08995 * 117.50232 * 214.97382 * 24 22 11 39 39 H 1.09000 * 117.49781 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 1 4.1359 -5.6676 -0.9622 13 7 4.4497 -5.4671 1.1018 14 6 5.7883 -5.7507 1.0487 15 1 6.2060 -6.2219 0.1713 16 6 6.6083 -5.4326 2.1226 17 7 6.0991 -4.8589 3.1921 18 14 8.4342 -5.8202 2.0504 19 1 9.0479 -5.1012 0.9051 20 1 9.0829 -5.3853 3.3134 21 1 8.6234 -7.2827 1.8754 22 6 3.1308 -7.2588 0.0860 23 6 3.4562 -7.9971 1.3860 24 6 4.2158 -8.3375 0.1013 25 1 -0.3633 -0.0057 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5089 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 0.0072 30 1 3.7436 -3.2746 -0.0186 31 1 1.7610 -5.0832 0.8616 32 1 1.7609 -5.0735 -0.9183 33 1 4.0744 -5.0442 1.8900 34 1 6.6722 -4.6362 3.9424 35 1 2.1890 -7.4993 -0.4072 36 1 3.9936 -7.4452 2.1573 37 1 2.7286 -8.7236 1.7478 38 1 3.9877 -9.2877 -0.3813 39 1 5.2527 -8.0095 0.0271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266398940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:16 Heat of formation + Delta-G solvation = -4.472305 kcal Electronic energy + Delta-G solvation = -21649.826199 eV Core-core repulsion = 18366.588012 eV Total energy + Delta-G solvation = -3283.238186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.64856 -40.58104 -39.12030 -36.10616 -35.20953 -34.83607 -32.72353 -31.43307 -29.93597 -28.39258 -25.70260 -24.66815 -23.32984 -22.90775 -22.00157 -21.20072 -20.46150 -19.38948 -18.88291 -17.42887 -17.10301 -17.03898 -16.64501 -16.32942 -15.93390 -15.54433 -15.20117 -14.88736 -14.56143 -14.24499 -14.02355 -13.85087 -13.69221 -13.49478 -12.95324 -12.84068 -12.75227 -12.64350 -12.61118 -12.15306 -11.96804 -11.59859 -11.26258 -11.02414 -10.83595 -10.64688 -10.61971 -10.19144 -9.53018 -8.99973 -7.88318 -5.16305 0.06304 1.43200 1.49661 1.50564 1.55872 1.78654 2.12076 2.31521 2.58530 3.13900 3.46359 3.76732 3.84852 3.86376 3.94869 4.00508 4.27800 4.33449 4.49084 4.55511 4.58128 4.62851 4.65642 4.78593 4.80864 4.90763 4.97654 5.13061 5.17932 5.18703 5.25978 5.37056 5.45958 5.54342 5.66405 5.69584 5.92348 6.31236 6.49092 7.03842 7.39500 8.10079 8.35400 9.34061 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.005283 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.365926 B = 5298.561634 C = 6672.005099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.095 4.095 3 C -0.231 4.231 4 C 0.004 3.996 5 O -0.179 6.179 6 C -0.121 4.121 7 C 0.595 3.405 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.127 3.873 11 C 0.191 3.809 12 H 0.060 0.940 13 N -0.721 5.721 14 C -0.220 4.220 15 H 0.076 0.924 16 C -0.067 4.067 17 N -0.966 5.966 18 Si 0.958 3.042 19 H -0.280 1.280 20 H -0.303 1.303 21 H -0.283 1.283 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.170 4.170 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.188 0.812 29 H 0.249 0.751 30 H 0.410 0.590 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.373 0.627 34 H 0.247 0.753 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 8.380 -8.795 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.249 4.249 4 C -0.065 4.065 5 O -0.074 6.074 6 C -0.173 4.173 7 C 0.383 3.617 8 O -0.438 6.438 9 N -0.352 5.352 10 C 0.003 3.997 11 C 0.082 3.918 12 H 0.078 0.922 13 N -0.361 5.361 14 C -0.352 4.352 15 H 0.094 0.906 16 C -0.259 4.259 17 N -0.617 5.617 18 Si 0.789 3.211 19 H -0.206 1.206 20 H -0.230 1.230 21 H -0.209 1.209 22 C -0.189 4.189 23 C -0.210 4.210 24 C -0.207 4.207 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.205 0.795 29 H 0.265 0.735 30 H 0.247 0.753 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.205 0.795 34 H 0.056 0.944 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.005 7.879 -8.874 14.314 hybrid contribution 1.500 0.043 0.794 1.698 sum -6.504 7.922 -8.080 13.052 Atomic orbital electron populations 1.20424 0.87490 1.03788 1.03028 1.21042 0.98457 0.91398 0.98907 1.22090 0.91843 1.00822 1.10165 1.25331 1.01718 0.79694 0.99776 1.84119 1.28057 1.24476 1.70796 1.21836 0.82449 0.94768 1.18225 1.16784 0.85500 0.82738 0.76710 1.90767 1.16457 1.83167 1.53427 1.45923 1.10397 1.06308 1.72551 1.21585 0.96823 0.79104 1.02173 1.20145 0.89534 0.90682 0.91443 0.92237 1.42517 1.04693 1.72101 1.16743 1.19387 0.85025 1.30814 0.99964 0.90586 1.25328 1.01206 1.02666 0.96714 1.69799 1.35468 1.49448 1.06941 0.85435 0.81800 0.77756 0.76094 1.20594 1.22966 1.20917 1.23039 0.99771 0.94076 1.01969 1.22774 1.03311 1.02862 0.92079 1.22842 0.97142 0.99074 1.01600 0.90727 0.91460 0.88814 0.79466 0.73464 0.75342 0.92432 0.89464 0.79474 0.94410 0.86383 0.90556 0.88996 0.87938 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 9.82 71.24 0.70 -1.45 16 2 C -0.09 -2.59 6.20 -19.74 -0.12 -2.72 16 3 C -0.23 -4.74 10.83 22.07 0.24 -4.50 16 4 C 0.00 0.09 12.08 67.10 0.81 0.90 16 5 O -0.18 -5.46 10.40 -4.97 -0.05 -5.51 16 6 C -0.12 -3.98 7.13 24.07 0.17 -3.81 16 7 C 0.59 21.64 7.79 86.44 0.67 22.32 16 8 O -0.56 -21.75 14.74 -4.32 -0.06 -21.82 16 9 N -0.70 -25.07 5.38 -467.10 -2.51 -27.59 16 10 C 0.13 4.29 5.22 86.38 0.45 4.74 16 11 C 0.19 6.94 2.86 44.99 0.13 7.07 16 12 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 13 N -0.72 -32.82 3.08 -322.95 -0.99 -33.82 16 14 C -0.22 -11.13 8.16 84.03 0.69 -10.44 16 15 H 0.08 3.73 6.91 -2.91 -0.02 3.71 16 16 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 17 N -0.97 -56.87 13.06 21.65 0.28 -56.58 16 18 Si 0.96 44.69 29.55 68.60 2.03 46.71 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C -0.17 -5.49 5.70 -10.79 -0.06 -5.56 16 23 C -0.17 -6.32 9.74 30.62 0.30 -6.02 16 24 C -0.17 -5.72 9.87 30.62 0.30 -5.42 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.87 6.44 -2.39 -0.02 1.85 16 27 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.25 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.41 15.43 7.89 -92.71 -0.73 14.70 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.37 19.12 7.80 -92.71 -0.72 18.39 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.12 3.21 8.11 -2.39 -0.02 3.19 16 36 H 0.08 3.50 6.68 -2.38 -0.02 3.48 16 37 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.08 3.02 6.22 -2.39 -0.01 3.01 16 Total: -1.00 -64.68 329.83 3.05 -61.63 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.37 Total: 45.03 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.74 Total: -8.06 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -3.23 Total: -117.99 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.12 Total: -27.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.68 3.05 -61.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.155 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds