Wall clock time and date at job start Tue Mar 31 2020 01:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47119 * 65.00241 * 11 10 9 13 13 N 1.46499 * 109.47283 * 305.00297 * 11 10 9 14 14 C 1.36935 * 120.00236 * 155.00262 * 13 11 10 15 15 H 1.07996 * 119.99785 * 359.97438 * 14 13 11 16 16 C 1.38818 * 120.00040 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46652 * 89.99793 * 18 16 14 20 20 H 1.48499 * 109.47109 * 209.99810 * 18 16 14 21 21 H 1.48500 * 109.47169 * 330.00327 * 18 16 14 22 22 C 1.52998 * 109.47243 * 185.00086 * 11 10 9 23 23 C 1.53004 * 117.50007 * 248.74815 * 22 11 10 24 24 C 1.52996 * 117.49907 * 180.08555 * 22 11 10 25 25 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 28 28 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 29 29 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 30 30 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 31 31 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 32 32 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 33 33 H 0.97006 * 119.99845 * 334.99467 * 13 11 10 34 34 H 0.97006 * 119.99395 * 179.97438 * 17 16 14 35 35 H 1.09001 * 115.54733 * 34.41805 * 22 11 10 36 36 H 1.09000 * 117.49695 * 359.97438 * 23 22 11 37 37 H 1.09002 * 117.49841 * 145.01694 * 23 22 11 38 38 H 1.09003 * 117.50069 * 214.97696 * 24 22 11 39 39 H 1.08995 * 117.50070 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 1 4.1351 -5.6775 0.9006 13 7 4.4506 -5.4550 -1.1609 14 6 5.7891 -5.7392 -1.1098 15 1 6.2062 -6.2191 -0.2368 16 6 6.6099 -5.4106 -2.1800 17 7 6.1014 -4.8263 -3.2441 18 14 8.4360 -5.7977 -2.1099 19 1 8.6758 -7.1546 -2.6636 20 1 9.1853 -4.7967 -2.9109 21 1 8.8984 -5.7498 -0.6996 22 6 3.1310 -7.2575 -0.1654 23 6 3.3242 -8.1718 1.0461 24 6 4.2158 -8.3361 -0.1873 25 1 -0.3633 -0.0057 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5089 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 0.0072 30 1 3.7436 -3.2746 -0.0186 31 1 1.7610 -5.0832 0.8616 32 1 1.7609 -5.0735 -0.9183 33 1 4.0760 -5.0237 -1.9449 34 1 6.6750 -4.5963 -3.9918 35 1 2.2473 -7.4197 -0.7826 36 1 3.7746 -7.7366 1.9382 37 1 2.5678 -8.9358 1.2258 38 1 4.0456 -9.2083 -0.8186 39 1 5.2523 -8.0092 -0.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266398941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:20 Heat of formation + Delta-G solvation = 10.464407 kcal Electronic energy + Delta-G solvation = -21527.350743 eV Core-core repulsion = 18244.760261 eV Total energy + Delta-G solvation = -3282.590482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.59501 -39.19233 -37.53257 -34.86787 -33.96810 -33.32301 -31.13739 -30.27966 -28.37654 -27.15324 -24.01950 -22.98310 -21.97546 -21.69782 -20.87494 -20.03465 -19.39000 -18.02962 -17.15720 -16.27521 -15.90159 -15.64616 -15.13805 -14.73969 -14.40468 -14.04035 -13.75782 -13.44618 -13.14098 -13.08113 -12.97171 -12.82019 -12.46661 -12.11158 -11.74094 -11.38683 -11.18030 -10.88355 -10.86825 -10.73350 -10.13667 -9.97549 -9.90908 -9.66169 -9.53077 -9.31681 -8.99109 -8.83833 -8.41110 -7.05951 -5.82115 -3.11880 1.20372 2.39018 2.86409 3.38971 3.40518 3.44685 3.46316 3.56989 4.40258 4.58578 4.76614 4.81810 5.04894 5.20489 5.45382 5.47616 5.50349 5.57081 5.59783 5.72676 5.74481 5.79379 5.88755 5.97924 6.04947 6.07924 6.16044 6.17521 6.37195 6.45063 6.53357 6.57921 6.74990 6.81926 6.96087 6.98346 7.64228 7.86505 8.34273 8.40880 9.46672 10.00478 10.36490 11.39703 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.005331 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.580822 B = 5251.169228 C = 6752.035233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.098 4.098 3 C -0.229 4.229 4 C -0.005 4.005 5 O -0.155 6.155 6 C -0.075 4.075 7 C 0.598 3.402 8 O -0.533 6.533 9 N -0.700 5.700 10 C 0.118 3.882 11 C 0.192 3.808 12 H 0.056 0.944 13 N -0.717 5.717 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 0.903 3.097 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.153 0.847 29 H 0.208 0.792 30 H 0.415 0.585 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 7.409 8.060 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.249 4.249 4 C -0.076 4.076 5 O -0.050 6.050 6 C -0.127 4.127 7 C 0.384 3.616 8 O -0.413 6.413 9 N -0.350 5.350 10 C -0.006 4.006 11 C 0.082 3.918 12 H 0.074 0.926 13 N -0.358 5.358 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.734 3.266 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.193 4.193 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.224 0.776 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.736 6.946 8.081 13.168 hybrid contribution 1.437 0.189 -0.465 1.522 sum -6.300 7.136 7.616 12.191 Atomic orbital electron populations 1.20385 0.88421 1.03406 1.02594 1.20585 0.97534 0.91010 1.00929 1.21685 0.92486 0.99946 1.10741 1.24345 0.99855 0.80867 1.02499 1.84144 1.28307 1.22488 1.70056 1.21999 0.81460 0.95045 1.14227 1.16537 0.85784 0.81915 0.77372 1.90799 1.15821 1.82497 1.52216 1.45915 1.10724 1.06057 1.72313 1.21681 0.97576 0.79472 1.01878 1.20061 0.89553 0.89078 0.93143 0.92620 1.42452 1.04920 1.71354 1.17026 1.19150 0.83898 1.32945 1.00917 0.91117 1.24723 0.97913 1.01347 0.96533 1.69665 1.34602 1.46595 1.06733 0.86258 0.85555 0.77552 0.77212 1.21730 1.21849 1.20774 1.23022 1.00386 0.94518 1.00162 1.22968 1.03921 1.03520 0.92993 1.22781 0.97798 0.99634 0.99061 0.91120 0.89470 0.91795 0.82942 0.77564 0.74738 0.91261 0.91411 0.78029 0.93478 0.89072 0.89536 0.90060 0.90199 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.82 36.01 0.35 -0.78 16 2 C -0.10 -1.39 6.20 -104.43 -0.65 -2.04 16 3 C -0.23 -2.68 10.83 -39.89 -0.43 -3.11 16 4 C -0.01 -0.06 12.08 29.63 0.36 0.29 16 5 O -0.16 -2.41 10.40 5.02 0.05 -2.36 16 6 C -0.08 -1.23 7.13 -36.80 -0.26 -1.49 16 7 C 0.60 10.66 7.79 -12.86 -0.10 10.56 16 8 O -0.53 -10.23 14.74 5.20 0.08 -10.15 16 9 N -0.70 -12.31 5.38 -61.62 -0.33 -12.64 16 10 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 11 C 0.19 3.57 2.70 -67.93 -0.18 3.39 16 12 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 13 N -0.72 -16.47 4.54 -53.43 -0.24 -16.71 16 14 C -0.24 -6.08 8.63 -15.06 -0.13 -6.21 16 15 H 0.07 1.76 6.91 -52.49 -0.36 1.40 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 18 Si 0.90 21.57 29.55 -169.99 -5.02 16.54 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.16 -2.75 5.36 -90.62 -0.49 -3.23 16 23 C -0.20 -2.95 10.18 -26.69 -0.27 -3.22 16 24 C -0.16 -2.74 9.78 -26.69 -0.26 -3.00 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.24 6.44 -51.93 -0.33 0.91 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.21 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.42 7.64 7.89 -40.82 -0.32 7.31 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.39 9.76 7.80 -40.82 -0.32 9.44 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 36 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.10 2.07 6.23 -51.93 -0.32 1.74 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -29.86 332.74 -7.33 -37.19 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -5.42 Total: 16.52 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.18 Total: -7.18 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.15 Total: -55.58 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.13 Total: -12.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.86 -7.33 -37.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.654 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds