Wall clock time and date at job start Tue Mar 31 2020 01:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47119 * 65.00241 * 11 10 9 13 13 N 1.46499 * 109.47283 * 305.00297 * 11 10 9 14 14 C 1.36935 * 120.00236 * 155.00262 * 13 11 10 15 15 H 1.07996 * 119.99785 * 359.97438 * 14 13 11 16 16 C 1.38818 * 120.00040 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46652 * 89.99793 * 18 16 14 20 20 H 1.48499 * 109.47109 * 209.99810 * 18 16 14 21 21 H 1.48500 * 109.47169 * 330.00327 * 18 16 14 22 22 C 1.52998 * 109.47243 * 185.00086 * 11 10 9 23 23 C 1.53004 * 117.50007 * 248.74815 * 22 11 10 24 24 C 1.52996 * 117.49907 * 180.08555 * 22 11 10 25 25 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 28 28 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 29 29 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 30 30 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 31 31 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 32 32 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 33 33 H 0.97006 * 119.99845 * 334.99467 * 13 11 10 34 34 H 0.97006 * 119.99395 * 179.97438 * 17 16 14 35 35 H 1.09001 * 115.54733 * 34.41805 * 22 11 10 36 36 H 1.09000 * 117.49695 * 359.97438 * 23 22 11 37 37 H 1.09002 * 117.49841 * 145.01694 * 23 22 11 38 38 H 1.09003 * 117.50069 * 214.97696 * 24 22 11 39 39 H 1.08995 * 117.50070 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 1 4.1351 -5.6775 0.9006 13 7 4.4506 -5.4550 -1.1609 14 6 5.7891 -5.7392 -1.1098 15 1 6.2062 -6.2191 -0.2368 16 6 6.6099 -5.4106 -2.1800 17 7 6.1014 -4.8263 -3.2441 18 14 8.4360 -5.7977 -2.1099 19 1 8.6758 -7.1546 -2.6636 20 1 9.1853 -4.7967 -2.9109 21 1 8.8984 -5.7498 -0.6996 22 6 3.1310 -7.2575 -0.1654 23 6 3.3242 -8.1718 1.0461 24 6 4.2158 -8.3361 -0.1873 25 1 -0.3633 -0.0057 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5089 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 0.0072 30 1 3.7436 -3.2746 -0.0186 31 1 1.7610 -5.0832 0.8616 32 1 1.7609 -5.0735 -0.9183 33 1 4.0760 -5.0237 -1.9449 34 1 6.6750 -4.5963 -3.9918 35 1 2.2473 -7.4197 -0.7826 36 1 3.7746 -7.7366 1.9382 37 1 2.5678 -8.9358 1.2258 38 1 4.0456 -9.2083 -0.8186 39 1 5.2523 -8.0092 -0.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266398941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:20 Heat of formation + Delta-G solvation = -8.833266 kcal Electronic energy + Delta-G solvation = -21528.187552 eV Core-core repulsion = 18244.760261 eV Total energy + Delta-G solvation = -3283.427292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.65039 -40.57622 -38.99862 -36.23787 -35.36159 -34.83706 -32.82050 -31.44188 -29.86726 -28.37244 -25.72504 -24.48967 -23.18403 -23.00203 -22.01414 -21.41180 -20.72160 -19.44819 -18.86142 -17.42921 -17.10474 -16.95879 -16.78509 -16.07307 -16.01146 -15.51504 -15.20109 -14.90597 -14.74839 -14.23529 -14.02315 -13.85222 -13.68313 -13.49584 -12.99255 -12.91836 -12.76289 -12.66445 -12.43094 -12.26212 -11.99242 -11.73446 -11.28704 -11.00566 -10.88965 -10.76830 -10.64710 -10.20387 -9.53393 -9.00607 -7.88914 -5.16801 0.06009 1.43138 1.49056 1.50018 1.57306 1.78182 2.11393 2.30624 2.57841 3.08133 3.47879 3.74818 3.78827 3.84988 3.96607 3.98782 4.17873 4.33869 4.39268 4.54410 4.55613 4.63823 4.66254 4.78292 4.79895 4.84118 4.91069 5.10981 5.12934 5.16425 5.23916 5.37410 5.41242 5.47892 5.53593 5.61435 5.92100 6.30434 6.48245 7.02939 7.38527 8.09274 8.34692 9.34097 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.005331 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.580822 B = 5251.169228 C = 6752.035233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.094 4.094 3 C -0.231 4.231 4 C 0.004 3.996 5 O -0.179 6.179 6 C -0.122 4.122 7 C 0.595 3.405 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.127 3.873 11 C 0.196 3.804 12 H 0.057 0.943 13 N -0.724 5.724 14 C -0.219 4.219 15 H 0.077 0.923 16 C -0.071 4.071 17 N -0.968 5.968 18 Si 0.961 3.039 19 H -0.293 1.293 20 H -0.301 1.301 21 H -0.269 1.269 22 C -0.173 4.173 23 C -0.161 4.161 24 C -0.174 4.174 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.188 0.812 29 H 0.250 0.750 30 H 0.410 0.590 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.372 0.628 34 H 0.247 0.753 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 8.230 9.666 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.249 4.249 4 C -0.065 4.065 5 O -0.075 6.075 6 C -0.173 4.173 7 C 0.383 3.617 8 O -0.438 6.438 9 N -0.352 5.352 10 C 0.003 3.997 11 C 0.087 3.913 12 H 0.075 0.925 13 N -0.363 5.363 14 C -0.351 4.351 15 H 0.095 0.905 16 C -0.263 4.263 17 N -0.619 5.619 18 Si 0.792 3.208 19 H -0.221 1.221 20 H -0.228 1.228 21 H -0.194 1.194 22 C -0.194 4.194 23 C -0.198 4.198 24 C -0.211 4.211 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.206 0.794 29 H 0.266 0.734 30 H 0.247 0.753 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.204 0.796 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.940 7.740 9.747 14.763 hybrid contribution 1.436 0.004 -0.883 1.686 sum -6.504 7.744 8.863 13.447 Atomic orbital electron populations 1.20424 0.87480 1.03590 1.03234 1.21043 0.98461 0.91387 0.98865 1.22091 0.91837 1.00821 1.10169 1.25337 1.01725 0.79684 0.99739 1.84119 1.28047 1.24491 1.70801 1.21823 0.82466 0.94733 1.18288 1.16790 0.85492 0.82750 0.76696 1.90768 1.16449 1.83164 1.53415 1.45921 1.10418 1.06289 1.72590 1.21597 0.96811 0.79151 1.02157 1.20165 0.89413 0.90339 0.91379 0.92526 1.42562 1.04755 1.71356 1.17656 1.19461 0.84958 1.30312 1.00334 0.90469 1.25390 1.01495 1.02686 0.96754 1.69819 1.35484 1.49121 1.07485 0.85312 0.81443 0.76603 0.77451 1.22061 1.22823 1.19395 1.22902 1.00550 0.93390 1.02595 1.23040 1.02678 1.02265 0.91845 1.22738 0.96684 1.00037 1.01662 0.90122 0.91801 0.89053 0.79449 0.73438 0.75335 0.89509 0.92458 0.79634 0.94398 0.88608 0.88631 0.87381 0.89522 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 9.82 71.24 0.70 -1.45 16 2 C -0.09 -2.59 6.20 -19.74 -0.12 -2.71 16 3 C -0.23 -4.74 10.83 22.07 0.24 -4.50 16 4 C 0.00 0.09 12.08 67.10 0.81 0.90 16 5 O -0.18 -5.48 10.40 -4.97 -0.05 -5.53 16 6 C -0.12 -4.01 7.13 24.07 0.17 -3.84 16 7 C 0.59 21.78 7.79 86.44 0.67 22.45 16 8 O -0.56 -21.87 14.74 -4.32 -0.06 -21.93 16 9 N -0.70 -25.35 5.38 -467.10 -2.52 -27.87 16 10 C 0.13 4.35 5.22 86.38 0.45 4.80 16 11 C 0.20 7.22 2.70 44.99 0.12 7.34 16 12 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 13 N -0.72 -33.78 4.54 -322.94 -1.47 -35.24 16 14 C -0.22 -11.24 8.63 84.04 0.73 -10.52 16 15 H 0.08 3.82 6.91 -2.91 -0.02 3.80 16 16 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 17 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16 18 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C -0.17 -5.78 5.36 -10.79 -0.06 -5.83 16 23 C -0.16 -4.38 10.18 30.62 0.31 -4.07 16 24 C -0.17 -5.92 9.78 30.62 0.30 -5.62 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.83 6.44 -2.39 -0.02 1.82 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.25 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.41 15.58 7.89 -92.71 -0.73 14.85 16 31 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.37 19.40 7.80 -92.70 -0.72 18.68 16 34 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 35 H 0.10 3.12 8.11 -2.39 -0.02 3.10 16 36 H 0.10 2.47 8.05 -2.39 -0.02 2.45 16 37 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.08 3.13 6.23 -2.39 -0.01 3.12 16 Total: -1.00 -66.00 332.74 2.63 -63.37 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.38 Total: 44.20 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.79 Total: -6.48 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -3.70 Total: -120.57 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.12 Total: -27.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.00 2.63 -63.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.537 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds