Wall clock time and date at job start Tue Mar 31 2020 01:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41374 * 126.58194 * 2 1 4 4 C 1.34518 * 106.84220 * 179.97438 * 3 2 1 5 5 O 1.34301 * 108.41902 * 359.73895 * 4 3 2 6 6 C 1.34301 * 109.47619 * 0.43368 * 5 4 3 7 7 C 1.50704 * 125.78952 * 179.82783 * 6 5 4 8 8 C 1.50702 * 109.47171 * 269.69410 * 7 6 5 9 9 O 1.21283 * 119.99449 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00175 * 179.72489 * 8 7 6 11 11 C 1.46497 * 120.00249 * 180.27227 * 10 8 7 12 12 C 1.50699 * 109.47225 * 179.97438 * 11 10 8 13 13 C 1.30999 * 119.99381 * 127.16166 * 12 11 10 14 14 C 1.50703 * 120.00623 * 7.55800 * 13 12 11 15 15 N 1.46502 * 109.47103 * 127.00612 * 14 13 12 16 16 C 1.36931 * 119.99913 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00149 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00104 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99965 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99792 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47039 * 90.00251 * 20 18 16 22 22 H 1.48495 * 109.47092 * 209.99883 * 20 18 16 23 23 H 1.48502 * 109.47487 * 330.00412 * 20 18 16 24 24 H 1.08995 * 109.47200 * 270.04424 * 1 2 3 25 25 H 1.09003 * 109.46544 * 30.04396 * 1 2 3 26 26 H 1.09003 * 109.47505 * 150.03835 * 1 2 3 27 27 H 1.08003 * 126.58642 * 359.97438 * 3 2 1 28 28 H 1.08002 * 125.79046 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.46819 * 149.69386 * 7 6 5 30 30 H 1.09002 * 109.47100 * 29.69661 * 7 6 5 31 31 H 0.97004 * 119.99949 * 0.27429 * 10 8 7 32 32 H 1.08996 * 109.47337 * 300.01018 * 11 10 8 33 33 H 1.09010 * 109.46637 * 60.00102 * 11 10 8 34 34 H 1.07995 * 120.00445 * 307.16168 * 12 11 10 35 35 H 1.08003 * 119.99842 * 187.56244 * 13 12 11 36 36 H 1.08992 * 109.47248 * 247.00836 * 14 13 12 37 37 H 1.09004 * 109.46670 * 7.00776 * 14 13 12 38 38 H 0.97002 * 119.99584 * 0.02562 * 15 14 13 39 39 H 0.96997 * 119.99753 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1352 0.0000 4 6 3.6157 0.6809 0.0006 5 8 3.5847 -0.6617 0.0067 6 6 2.3086 -1.0802 0.0006 7 6 1.8521 -2.5165 0.0008 8 6 1.7004 -2.9956 -1.4200 9 8 1.9391 -2.2445 -2.3419 10 7 1.3045 -4.2601 -1.6661 11 6 1.1628 -4.7277 -3.0472 12 6 0.7122 -6.1657 -3.0470 13 6 -0.3442 -6.5210 -3.7353 14 6 -1.0082 -5.5338 -4.6603 15 7 -1.1356 -6.1244 -5.9949 16 6 -1.7124 -5.4072 -7.0088 17 1 -2.0730 -4.4059 -6.8247 18 6 -1.8336 -5.9670 -8.2732 19 7 -2.3875 -5.2774 -9.2479 20 14 -1.2092 -7.6985 -8.5918 21 1 -2.2976 -8.6736 -8.3275 22 1 -0.7731 -7.8149 -10.0065 23 1 -0.0607 -7.9835 -7.6946 24 1 -0.3633 0.0008 1.0276 25 1 -0.3632 0.8896 -0.5145 26 1 -0.3634 -0.8903 -0.5132 27 1 2.0368 2.1690 -0.0004 28 1 4.5061 1.2922 0.0011 29 1 0.8937 -2.5930 0.5143 30 1 2.5900 -3.1322 0.5151 31 1 1.1133 -4.8607 -0.9287 32 1 0.4243 -4.1151 -3.5643 33 1 2.1226 -4.6481 -3.5580 34 1 1.2601 -6.9033 -2.4795 35 1 -0.7395 -7.5216 -3.6398 36 1 -1.9978 -5.2855 -4.2769 37 1 -0.4039 -4.6285 -4.7197 38 1 -0.8113 -7.0235 -6.1602 39 1 -2.4725 -5.6687 -10.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268589483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:30 Heat of formation + Delta-G solvation = -14.693853 kcal Electronic energy + Delta-G solvation = -20434.312253 eV Core-core repulsion = 17150.630827 eV Total energy + Delta-G solvation = -3283.681426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.52552 -40.70960 -38.08716 -36.19507 -35.21604 -34.46799 -33.21326 -32.62238 -29.94940 -28.37490 -27.17870 -25.96819 -24.05001 -22.48042 -21.87801 -20.79131 -20.36019 -19.26049 -18.05868 -17.99642 -17.46470 -16.79650 -16.63406 -16.53521 -15.89934 -15.53603 -15.31306 -14.93411 -14.55509 -14.38826 -14.30332 -14.14649 -13.95540 -13.65028 -13.57076 -13.34421 -13.06104 -12.93771 -12.74328 -12.34712 -12.21291 -11.88783 -11.65591 -11.17743 -11.05935 -10.51368 -10.36521 -9.97636 -9.28957 -9.27011 -8.05945 -5.41056 0.72084 1.05439 1.36837 1.41887 1.49521 1.58566 1.64524 2.07687 2.46867 2.48273 3.25101 3.61085 3.74798 3.84750 3.97078 3.98497 4.06146 4.12264 4.27746 4.32959 4.44664 4.58460 4.62589 4.79114 4.83221 4.88696 4.89497 4.97026 5.06318 5.14016 5.32147 5.36611 5.55609 5.66871 5.69273 5.86305 6.17819 6.21259 6.55398 7.04174 7.25157 7.78301 7.99905 9.15689 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.002878 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.040775 B = 9727.761453 C =10177.560036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.184 4.184 3 C -0.231 4.231 4 C -0.040 4.040 5 O -0.191 6.191 6 C -0.024 4.024 7 C -0.050 4.050 8 C 0.506 3.494 9 O -0.586 6.586 10 N -0.705 5.705 11 C 0.136 3.864 12 C -0.152 4.152 13 C -0.139 4.139 14 C 0.162 3.838 15 N -0.753 5.753 16 C -0.244 4.244 17 H 0.051 0.949 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.249 1.249 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.163 0.837 28 H 0.235 0.765 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.422 0.578 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.157 0.843 35 H 0.136 0.864 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.369 0.631 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 3.300 28.232 30.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.185 4.185 3 C -0.250 4.250 4 C -0.107 4.107 5 O -0.088 6.088 6 C -0.073 4.073 7 C -0.089 4.089 8 C 0.293 3.707 9 O -0.465 6.465 10 N -0.358 5.358 11 C 0.013 3.987 12 C -0.171 4.171 13 C -0.158 4.158 14 C 0.036 3.964 15 N -0.399 5.399 16 C -0.374 4.374 17 H 0.069 0.931 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.173 1.173 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.181 0.819 28 H 0.252 0.748 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.203 0.797 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.596 3.820 27.498 30.086 hybrid contribution -0.096 -0.475 -0.849 0.978 sum 11.499 3.345 26.648 29.216 Atomic orbital electron populations 1.20227 0.88224 1.02575 1.02979 1.20616 0.98189 0.92624 1.07070 1.22053 0.93010 1.00580 1.09365 1.24682 1.00991 0.80092 1.04968 1.83956 1.29170 1.23922 1.71755 1.21757 0.81143 0.96378 1.08064 1.20199 1.06653 0.88667 0.93419 1.21097 0.75972 0.81696 0.91924 1.90766 1.51442 1.56176 1.48161 1.45732 1.68540 1.12678 1.08840 1.20397 1.00912 0.93861 0.83559 1.22833 0.96387 0.95539 1.02335 1.23067 0.96092 1.00489 0.96144 1.20064 0.97704 0.94997 0.83610 1.42598 1.73566 1.16642 1.07139 1.19037 1.30535 0.97995 0.89866 0.93096 1.25628 1.01527 1.03260 0.95334 1.69905 1.51476 1.39620 1.02471 0.85288 0.79144 0.79526 0.77092 1.19820 1.22186 1.17323 0.89268 0.91589 0.92337 0.81939 0.74846 0.82769 0.83915 0.73965 0.92356 0.92236 0.82518 0.84607 0.95282 0.95069 0.79727 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.99 71.24 0.71 -0.79 16 2 C -0.18 -4.11 6.16 -19.94 -0.12 -4.23 16 3 C -0.23 -4.72 10.87 22.19 0.24 -4.48 16 4 C -0.04 -0.77 12.09 66.97 0.81 0.04 16 5 O -0.19 -4.55 10.65 -2.44 -0.03 -4.57 16 6 C -0.02 -0.53 5.81 24.83 0.14 -0.38 16 7 C -0.05 -0.75 5.85 29.10 0.17 -0.58 16 8 C 0.51 11.94 7.82 87.66 0.69 12.63 16 9 O -0.59 -21.22 16.03 -3.04 -0.05 -21.27 16 10 N -0.70 -13.08 5.55 -466.79 -2.59 -15.67 16 11 C 0.14 3.48 5.76 85.63 0.49 3.97 16 12 C -0.15 -3.16 9.63 25.65 0.25 -2.92 16 13 C -0.14 -3.69 9.63 25.65 0.25 -3.45 16 14 C 0.16 6.25 6.35 85.63 0.54 6.79 16 15 N -0.75 -36.23 5.40 -347.17 -1.87 -38.10 16 16 C -0.24 -14.49 10.47 84.04 0.88 -13.61 16 17 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 19 N -0.98 -64.78 13.97 21.65 0.30 -64.48 16 20 Si 0.96 45.88 27.74 68.60 1.90 47.79 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.11 7.78 -2.39 -0.02 1.09 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.24 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.15 1.24 7.76 -2.39 -0.02 1.22 16 30 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.42 4.00 8.46 -92.71 -0.78 3.21 16 32 H 0.06 1.91 5.30 -2.39 -0.01 1.90 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.03 1.30 5.29 -2.38 -0.01 1.29 16 38 H 0.37 16.50 5.52 -92.71 -0.51 15.99 16 39 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -85.25 335.43 2.90 -82.35 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.28 Total: 24.49 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.52 Total: -10.54 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -4.16 Total: -118.25 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.07 Total: -25.84 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.79 kcal Total: -85.25 2.90 -82.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268589483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.654 kcal (2) G-P(sol) polarization free energy of solvation -85.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds