Wall clock time and date at job start Tue Mar 31 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41384 * 126.58170 * 2 1 4 4 C 1.34520 * 106.84346 * 179.97438 * 3 2 1 5 5 O 1.34303 * 108.41467 * 359.73519 * 4 3 2 6 6 C 1.34303 * 109.48375 * 0.43766 * 5 4 3 7 7 C 1.50698 * 125.79561 * 179.82385 * 6 5 4 8 8 C 1.50691 * 109.47305 * 269.69363 * 7 6 5 9 9 O 1.21288 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00055 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99942 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46836 * 180.02562 * 11 10 8 13 13 C 1.31006 * 120.00161 * 124.99857 * 12 11 10 14 14 C 1.50699 * 120.00263 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46700 * 125.00023 * 14 13 12 16 16 C 1.36935 * 119.99926 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00369 * 179.73019 * 16 15 14 19 19 N 1.31617 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47045 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47426 * 119.99572 * 20 18 16 23 23 H 1.48501 * 109.46833 * 239.99815 * 20 18 16 24 24 H 1.08997 * 109.47327 * 270.04843 * 1 2 3 25 25 H 1.09004 * 109.46887 * 30.04599 * 1 2 3 26 26 H 1.09000 * 109.47110 * 150.04349 * 1 2 3 27 27 H 1.07997 * 126.57782 * 359.97438 * 3 2 1 28 28 H 1.07995 * 125.78879 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47309 * 149.68936 * 7 6 5 30 30 H 1.09000 * 109.46518 * 29.69426 * 7 6 5 31 31 H 0.97001 * 120.00321 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.47427 * 60.00012 * 11 10 8 33 33 H 1.09006 * 109.47023 * 299.99680 * 11 10 8 34 34 H 1.07994 * 120.00349 * 304.99743 * 12 11 10 35 35 H 1.08001 * 119.99710 * 0.02562 * 13 12 11 36 36 H 1.08998 * 109.46743 * 5.00499 * 14 13 12 37 37 H 1.08994 * 109.47542 * 245.00358 * 14 13 12 38 38 H 0.97005 * 120.00261 * 0.02562 * 15 14 13 39 39 H 0.97004 * 120.00382 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6158 0.6810 0.0006 5 8 3.5847 -0.6616 0.0068 6 6 2.3086 -1.0803 0.0006 7 6 1.8521 -2.5164 0.0008 8 6 1.7005 -2.9955 -1.4199 9 8 1.9391 -2.2445 -2.3419 10 7 1.2996 -4.2586 -1.6659 11 6 1.1528 -4.7245 -3.0471 12 6 0.6961 -6.1606 -3.0468 13 6 -0.3875 -6.5036 -3.6983 14 6 -0.8439 -7.9398 -3.6985 15 7 -2.2290 -8.0120 -3.2269 16 6 -2.8607 -9.2239 -3.1412 17 1 -2.3379 -10.1265 -3.4216 18 6 -4.1713 -9.2931 -2.6891 19 7 -4.8067 -8.1938 -2.3424 20 14 -5.0329 -10.9463 -2.5714 21 1 -4.1078 -12.0194 -3.0164 22 1 -5.4387 -11.1941 -1.1647 23 1 -6.2372 -10.9398 -3.4402 24 1 -0.3634 0.0009 1.0276 25 1 -0.3633 0.8896 -0.5146 26 1 -0.3633 -0.8904 -0.5132 27 1 2.0367 2.1690 -0.0004 28 1 4.5061 1.2923 0.0011 29 1 0.8938 -2.5930 0.5143 30 1 2.5901 -3.1321 0.5151 31 1 1.1084 -4.8591 -0.9286 32 1 2.1113 -4.6477 -3.5604 33 1 0.4147 -4.1090 -3.5617 34 1 1.2622 -6.9072 -2.5097 35 1 -0.9534 -5.7571 -4.2358 36 1 -0.2041 -8.5243 -3.0374 37 1 -0.7831 -8.3402 -4.7104 38 1 -2.6987 -7.2014 -2.9755 39 1 -5.7225 -8.2420 -2.0261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268589484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:36 Heat of formation + Delta-G solvation = -24.881933 kcal Electronic energy + Delta-G solvation = -20089.128589 eV Core-core repulsion = 16805.005375 eV Total energy + Delta-G solvation = -3284.123214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.52424 -40.68327 -37.68865 -36.23627 -35.21340 -34.43558 -33.17788 -32.28321 -29.96758 -28.62048 -27.02474 -25.67192 -23.64258 -22.44358 -21.89019 -20.95323 -20.39230 -19.12660 -18.35387 -17.99503 -17.01343 -16.80760 -16.66415 -16.58475 -15.67437 -15.38974 -15.21992 -15.03234 -14.67197 -14.42540 -14.20636 -13.96773 -13.63862 -13.50384 -13.41592 -13.31152 -12.99246 -12.85439 -12.75328 -12.34981 -12.14727 -11.98584 -11.77642 -11.20898 -11.02422 -10.50986 -10.37211 -9.98527 -9.27551 -9.01170 -7.96115 -5.25892 0.72820 1.08663 1.48901 1.49627 1.56298 1.59842 1.65283 2.06989 2.49162 2.57276 3.37971 3.61512 3.73618 3.93846 3.98582 4.06029 4.10360 4.23889 4.27598 4.44551 4.47287 4.62986 4.67615 4.72310 4.78785 4.88872 4.93085 4.96365 5.01350 5.14805 5.31614 5.33696 5.48275 5.66449 5.67023 5.84000 6.21834 6.26307 6.50860 7.18644 7.32375 8.06421 8.30334 9.27564 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.002496 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.640452 B =11217.197799 C =11802.138625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.183 4.183 3 C -0.229 4.229 4 C -0.039 4.039 5 O -0.191 6.191 6 C -0.022 4.022 7 C -0.056 4.056 8 C 0.512 3.488 9 O -0.581 6.581 10 N -0.713 5.713 11 C 0.158 3.842 12 C -0.160 4.160 13 C -0.132 4.132 14 C 0.173 3.827 15 N -0.744 5.744 16 C -0.247 4.247 17 H 0.078 0.922 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.294 1.294 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.164 0.836 28 H 0.237 0.763 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.418 0.582 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.374 0.626 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.182 15.514 7.529 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.184 4.184 3 C -0.248 4.248 4 C -0.106 4.106 5 O -0.088 6.088 6 C -0.072 4.072 7 C -0.095 4.095 8 C 0.299 3.701 9 O -0.461 6.461 10 N -0.365 5.365 11 C 0.034 3.966 12 C -0.179 4.179 13 C -0.152 4.152 14 C 0.048 3.952 15 N -0.387 5.387 16 C -0.379 4.379 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.221 1.221 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.182 0.818 28 H 0.253 0.747 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.206 0.794 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.602 15.633 6.838 24.515 hybrid contribution -1.078 -0.475 0.157 1.188 sum 16.524 15.158 6.995 23.489 Atomic orbital electron populations 1.20223 0.88357 1.02625 1.02853 1.20604 0.98081 0.92671 1.07093 1.22039 0.92905 1.00502 1.09344 1.24706 1.01012 0.80013 1.04868 1.83958 1.29037 1.24011 1.71759 1.21668 0.81227 0.96117 1.08179 1.20186 1.06374 0.88997 0.93934 1.20919 0.75888 0.81525 0.91758 1.90723 1.51659 1.55891 1.47784 1.45901 1.68289 1.12954 1.09399 1.20209 1.01203 0.91798 0.83352 1.22766 0.97791 0.96195 1.01128 1.23006 0.96204 0.97099 0.98858 1.19911 0.85417 0.92915 0.97000 1.42543 1.10670 1.06172 1.79340 1.19705 0.95336 0.87341 1.35497 0.90382 1.25614 0.98037 1.00628 1.02589 1.69827 1.12058 1.28045 1.52069 0.85041 0.78206 0.79428 0.76875 1.18924 1.21842 1.22107 0.89730 0.91181 0.92471 0.81794 0.74696 0.83399 0.84269 0.74449 0.90542 0.92410 0.84970 0.87582 0.94755 0.95286 0.79377 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.99 71.24 0.71 -0.82 16 2 C -0.18 -4.04 6.16 -19.94 -0.12 -4.17 16 3 C -0.23 -4.43 10.87 22.19 0.24 -4.19 16 4 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 5 O -0.19 -4.43 10.65 -2.48 -0.03 -4.46 16 6 C -0.02 -0.49 5.81 24.83 0.14 -0.35 16 7 C -0.06 -0.93 5.85 29.10 0.17 -0.75 16 8 C 0.51 12.02 7.82 87.65 0.69 12.71 16 9 O -0.58 -19.32 16.03 -3.05 -0.05 -19.37 16 10 N -0.71 -14.32 5.55 -466.78 -2.59 -16.91 16 11 C 0.16 3.68 6.11 85.63 0.52 4.20 16 12 C -0.16 -3.87 9.24 25.64 0.24 -3.64 16 13 C -0.13 -4.08 9.24 25.64 0.24 -3.85 16 14 C 0.17 6.69 6.70 85.63 0.57 7.26 16 15 N -0.74 -37.54 5.59 -347.19 -1.94 -39.48 16 16 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -58.91 13.06 21.65 0.28 -58.62 16 20 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.12 7.78 -2.39 -0.02 1.10 16 27 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 28 H 0.24 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.15 1.68 7.76 -2.39 -0.02 1.66 16 30 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.42 6.14 8.46 -92.71 -0.78 5.35 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.53 7.79 -2.38 -0.02 1.51 16 34 H 0.13 2.82 7.84 -2.91 -0.02 2.79 16 35 H 0.11 3.34 7.84 -2.91 -0.02 3.31 16 36 H 0.03 1.27 7.79 -2.39 -0.02 1.26 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.37 20.13 7.66 -92.70 -0.71 19.42 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -75.34 343.03 2.79 -72.55 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.43 Total: 28.98 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 5.52 Total: -10.21 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.25 Total: -115.02 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.08 Total: -23.82 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.34 2.79 -72.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268589484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.672 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds