Wall clock time and date at job start Tue Mar 31 2020 00:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35129 * 125.61392 * 2 1 4 4 C 1.40362 * 107.11279 * 179.81876 * 3 2 1 5 5 C 1.36551 * 106.71037 * 0.35393 * 4 3 2 6 6 C 1.46652 * 125.98820 * 179.90754 * 5 4 3 7 7 O 1.21692 * 120.00403 * 359.71800 * 6 5 4 8 8 N 1.34775 * 119.99847 * 179.97438 * 6 5 4 9 9 C 1.47423 * 125.64981 * 354.69320 * 8 6 5 10 10 C 1.55127 * 104.72533 * 155.82026 * 9 8 6 11 11 C 1.55145 * 101.48793 * 37.29123 * 10 9 8 12 12 C 1.47027 * 125.64933 * 174.99901 * 8 6 5 13 13 H 1.08991 * 109.88313 * 300.44162 * 12 8 6 14 14 C 1.52994 * 109.87995 * 61.60770 * 12 8 6 15 15 N 1.46501 * 109.47093 * 185.39839 * 14 12 8 16 16 C 1.36936 * 120.00019 * 185.01278 * 15 14 12 17 17 H 1.07998 * 120.00395 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00107 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99706 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00311 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47162 * 59.99795 * 20 18 16 22 22 H 1.48495 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47072 * 300.00142 * 20 18 16 24 24 O 1.33931 * 125.61553 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46693 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46848 * 299.97631 * 1 2 3 27 27 H 1.08995 * 109.47126 * 59.97902 * 1 2 3 28 28 H 1.07997 * 126.44513 * 0.05712 * 3 2 1 29 29 H 1.08003 * 126.65195 * 180.22862 * 4 3 2 30 30 H 1.09010 * 110.36794 * 274.74602 * 9 8 6 31 31 H 1.09004 * 110.36622 * 37.06648 * 9 8 6 32 32 H 1.09007 * 111.18768 * 279.18839 * 10 9 8 33 33 H 1.09000 * 110.90866 * 155.27541 * 10 9 8 34 34 H 1.08998 * 110.72581 * 205.97295 * 11 10 9 35 35 H 1.09008 * 110.71778 * 82.69616 * 11 10 9 36 36 H 1.09008 * 109.47097 * 305.39452 * 14 12 8 37 37 H 1.09007 * 109.47607 * 65.39479 * 14 12 8 38 38 H 0.96997 * 119.99798 * 5.01085 * 15 14 12 39 39 H 0.97001 * 120.00291 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0042 5 6 3.5824 -0.7117 -0.0014 6 6 4.7415 -1.6101 -0.0017 7 8 5.8680 -1.1499 -0.0017 8 7 4.5590 -2.9454 -0.0071 9 6 3.2606 -3.6357 0.0977 10 6 3.4953 -5.0195 -0.5629 11 6 4.9419 -5.3401 -0.1030 12 6 5.6226 -3.9552 -0.1122 13 1 6.1726 -3.8187 -1.0432 14 6 6.5738 -3.8349 1.0800 15 7 7.6991 -4.7558 0.9017 16 6 8.6305 -4.8993 1.8952 17 1 8.5353 -4.3339 2.8105 18 6 9.6965 -5.7723 1.7265 19 7 9.8123 -6.4617 0.6114 20 14 10.9666 -5.9685 3.0821 21 1 10.3004 -6.4506 4.3186 22 1 11.9954 -6.9518 2.6579 23 1 11.6141 -4.6586 3.3472 24 8 2.2870 -1.0888 -0.0005 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5141 -0.8898 28 1 1.9613 2.1260 0.0009 29 1 4.5113 1.2703 0.0088 30 1 2.9778 -3.7551 1.1436 31 1 2.4924 -3.0829 -0.4432 32 1 3.4365 -4.9525 -1.6493 33 1 2.7908 -5.7579 -0.1799 34 1 5.4299 -6.0143 -0.8068 35 1 4.9423 -5.7633 0.9016 36 1 6.9474 -2.8129 1.1451 37 1 6.0406 -4.0859 1.9971 38 1 7.7844 -5.2639 0.0799 39 1 10.5574 -7.0714 0.4933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270000176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:04 Heat of formation + Delta-G solvation = -3.488680 kcal Electronic energy + Delta-G solvation = -21624.013986 eV Core-core repulsion = 18340.818453 eV Total energy + Delta-G solvation = -3283.195533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.83666 -39.84814 -37.38387 -34.48519 -33.49920 -32.27283 -31.52251 -31.27578 -28.80602 -27.30063 -25.06009 -23.64304 -22.16251 -21.96561 -21.33377 -20.55081 -19.46384 -17.65609 -16.86748 -16.72841 -16.26340 -15.67997 -14.96380 -14.43080 -14.28581 -13.81118 -13.58134 -13.53333 -13.33180 -13.21738 -13.17775 -12.99197 -12.77597 -12.56327 -12.25151 -12.09282 -11.46728 -11.05751 -10.88567 -10.78583 -10.53298 -10.44707 -10.15846 -10.04996 -10.02930 -9.64475 -8.78889 -8.72183 -8.39540 -6.84420 -5.69898 -2.97896 0.98789 2.18766 2.45922 3.08278 3.26623 3.49658 3.53403 3.55220 4.31138 4.58596 4.63464 4.68539 4.76005 4.92007 5.01011 5.06355 5.08113 5.28023 5.42084 5.45674 5.55279 5.63238 5.64457 5.68176 5.81765 5.84797 5.95930 6.08165 6.09353 6.20391 6.22711 6.44239 6.53381 6.77046 6.86264 7.05435 7.57846 7.77081 8.17228 8.49085 9.59952 10.16523 10.52522 11.53200 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003838 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.004378 B = 7294.573240 C = 7898.227588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 C -0.222 4.222 4 C -0.122 4.122 5 C -0.067 4.067 6 C 0.610 3.390 7 O -0.507 6.507 8 N -0.603 5.603 9 C 0.098 3.902 10 C -0.134 4.134 11 C -0.120 4.120 12 C 0.131 3.869 13 H 0.079 0.921 14 C 0.144 3.856 15 N -0.728 5.728 16 C -0.234 4.234 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 O -0.158 6.158 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.021 0.979 38 H 0.383 0.617 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.958 10.251 -3.585 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.241 4.241 4 C -0.143 4.143 5 C -0.119 4.119 6 C 0.397 3.603 7 O -0.384 6.384 8 N -0.336 5.336 9 C -0.024 4.024 10 C -0.172 4.172 11 C -0.158 4.158 12 C 0.028 3.972 13 H 0.097 0.903 14 C 0.016 3.984 15 N -0.373 5.373 16 C -0.366 4.366 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 O -0.055 6.055 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.217 0.783 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.327 10.269 -3.433 24.814 hybrid contribution 0.810 -0.055 0.504 0.955 sum -21.517 10.214 -2.930 23.998 Atomic orbital electron populations 1.20386 0.84726 1.04350 1.03841 1.22833 0.94310 0.84472 1.02934 1.21546 0.92370 0.99728 1.10492 1.21943 0.98625 0.92937 1.00782 1.22140 0.81681 0.94566 1.13490 1.16200 0.86053 0.80210 0.77795 1.90939 1.21830 1.75166 1.50465 1.48393 1.09261 1.04434 1.71537 1.22509 0.85488 0.93361 1.01072 1.22846 0.97942 0.95645 1.00768 1.22680 0.93944 0.95670 1.03471 1.21898 0.88277 0.86313 1.00670 0.90267 1.20998 0.88714 0.95215 0.93489 1.42183 1.25651 1.49392 1.20031 1.19177 1.01918 1.19325 0.96150 0.91305 1.24714 0.99032 0.99720 0.97562 1.69646 1.32672 1.30695 1.25430 0.86246 0.81273 0.77343 0.81218 1.21328 1.21706 1.21275 1.84134 1.16131 1.34426 1.70800 0.90309 0.89331 0.89373 0.82833 0.82230 0.91201 0.89988 0.90737 0.89885 0.89587 0.89783 0.94648 0.96086 0.78324 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 36.01 0.37 -0.02 16 2 C 0.01 0.06 7.31 -35.41 -0.26 -0.19 16 3 C -0.22 -2.22 10.77 -39.89 -0.43 -2.65 16 4 C -0.12 -1.57 10.62 -39.39 -0.42 -1.99 16 5 C -0.07 -0.97 6.94 -36.80 -0.26 -1.23 16 6 C 0.61 10.73 7.63 -12.87 -0.10 10.63 16 7 O -0.51 -10.77 15.66 5.20 0.08 -10.69 16 8 N -0.60 -9.78 3.06 -164.41 -0.50 -10.28 16 9 C 0.10 1.21 6.35 -2.41 -0.02 1.19 16 10 C -0.13 -1.50 7.10 -24.47 -0.17 -1.68 16 11 C -0.12 -1.80 6.24 -24.90 -0.16 -1.96 16 12 C 0.13 2.38 2.94 -66.95 -0.20 2.18 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.14 3.26 5.66 -4.04 -0.02 3.24 16 15 N -0.73 -19.43 5.42 -59.91 -0.32 -19.76 16 16 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.94 -28.90 13.06 55.49 0.72 -28.18 16 20 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 O -0.16 -1.93 7.77 4.99 0.04 -1.89 16 25 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 30 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.08 0.91 5.93 -51.93 -0.31 0.60 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.35 7.76 -51.92 -0.40 0.95 16 36 H 0.04 0.89 6.55 -51.92 -0.34 0.55 16 37 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 38 H 0.38 10.49 7.62 -40.82 -0.31 10.18 16 39 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -34.61 326.57 -7.53 -42.15 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.55 Total: 5.62 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.90 Total: -0.04 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.10 Total: -58.22 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.12 Total: -12.57 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.61 -7.53 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270000176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.659 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds