Wall clock time and date at job start Tue Mar 31 2020 00:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35129 * 125.61392 * 2 1 4 4 C 1.40362 * 107.11279 * 179.81876 * 3 2 1 5 5 C 1.36551 * 106.71037 * 0.35393 * 4 3 2 6 6 C 1.46652 * 125.98820 * 179.90754 * 5 4 3 7 7 O 1.21692 * 120.00403 * 359.71800 * 6 5 4 8 8 N 1.34775 * 119.99847 * 179.97438 * 6 5 4 9 9 C 1.47423 * 125.64981 * 354.69320 * 8 6 5 10 10 C 1.55127 * 104.72533 * 155.82026 * 9 8 6 11 11 C 1.55145 * 101.48793 * 37.29123 * 10 9 8 12 12 C 1.47027 * 125.64933 * 174.99901 * 8 6 5 13 13 H 1.08991 * 109.88313 * 300.44162 * 12 8 6 14 14 C 1.52994 * 109.87995 * 61.60770 * 12 8 6 15 15 N 1.46501 * 109.47093 * 185.39839 * 14 12 8 16 16 C 1.36936 * 120.00019 * 185.01278 * 15 14 12 17 17 H 1.07998 * 120.00395 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00107 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99706 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00311 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47162 * 59.99795 * 20 18 16 22 22 H 1.48495 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47072 * 300.00142 * 20 18 16 24 24 O 1.33931 * 125.61553 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46693 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46848 * 299.97631 * 1 2 3 27 27 H 1.08995 * 109.47126 * 59.97902 * 1 2 3 28 28 H 1.07997 * 126.44513 * 0.05712 * 3 2 1 29 29 H 1.08003 * 126.65195 * 180.22862 * 4 3 2 30 30 H 1.09010 * 110.36794 * 274.74602 * 9 8 6 31 31 H 1.09004 * 110.36622 * 37.06648 * 9 8 6 32 32 H 1.09007 * 111.18768 * 279.18839 * 10 9 8 33 33 H 1.09000 * 110.90866 * 155.27541 * 10 9 8 34 34 H 1.08998 * 110.72581 * 205.97295 * 11 10 9 35 35 H 1.09008 * 110.71778 * 82.69616 * 11 10 9 36 36 H 1.09008 * 109.47097 * 305.39452 * 14 12 8 37 37 H 1.09007 * 109.47607 * 65.39479 * 14 12 8 38 38 H 0.96997 * 119.99798 * 5.01085 * 15 14 12 39 39 H 0.97001 * 120.00291 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0042 5 6 3.5824 -0.7117 -0.0014 6 6 4.7415 -1.6101 -0.0017 7 8 5.8680 -1.1499 -0.0017 8 7 4.5590 -2.9454 -0.0071 9 6 3.2606 -3.6357 0.0977 10 6 3.4953 -5.0195 -0.5629 11 6 4.9419 -5.3401 -0.1030 12 6 5.6226 -3.9552 -0.1122 13 1 6.1726 -3.8187 -1.0432 14 6 6.5738 -3.8349 1.0800 15 7 7.6991 -4.7558 0.9017 16 6 8.6305 -4.8993 1.8952 17 1 8.5353 -4.3339 2.8105 18 6 9.6965 -5.7723 1.7265 19 7 9.8123 -6.4617 0.6114 20 14 10.9666 -5.9685 3.0821 21 1 10.3004 -6.4506 4.3186 22 1 11.9954 -6.9518 2.6579 23 1 11.6141 -4.6586 3.3472 24 8 2.2870 -1.0888 -0.0005 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5141 -0.8898 28 1 1.9613 2.1260 0.0009 29 1 4.5113 1.2703 0.0088 30 1 2.9778 -3.7551 1.1436 31 1 2.4924 -3.0829 -0.4432 32 1 3.4365 -4.9525 -1.6493 33 1 2.7908 -5.7579 -0.1799 34 1 5.4299 -6.0143 -0.8068 35 1 4.9423 -5.7633 0.9016 36 1 6.9474 -2.8129 1.1451 37 1 6.0406 -4.0859 1.9971 38 1 7.7844 -5.2639 0.0799 39 1 10.5574 -7.0714 0.4933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270000176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:04 Heat of formation + Delta-G solvation = -26.950619 kcal Electronic energy + Delta-G solvation = -21625.031372 eV Core-core repulsion = 18340.818453 eV Total energy + Delta-G solvation = -3284.212919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.74171 -41.16654 -38.75705 -36.47172 -34.36690 -33.61184 -33.01058 -32.45169 -30.45553 -28.16452 -26.79633 -25.10474 -23.88221 -22.96142 -22.24855 -21.71281 -20.75844 -19.36121 -18.46695 -17.90439 -17.40542 -16.87212 -16.36801 -16.10907 -15.55083 -15.36068 -15.11181 -15.02817 -14.44665 -14.20378 -14.01990 -13.96798 -13.77274 -13.68051 -13.63847 -13.07414 -12.95839 -12.77908 -12.75266 -12.24754 -12.07032 -11.95452 -11.84884 -11.66001 -11.43148 -11.06690 -10.95278 -9.93832 -9.43334 -9.06767 -7.99029 -5.29338 -0.03732 1.32934 1.42592 1.45243 1.48580 1.54872 1.95390 2.04264 2.54031 3.31825 3.37117 3.56000 3.70592 3.87060 3.90225 3.91397 4.08777 4.22159 4.27933 4.41775 4.52540 4.55666 4.66916 4.72671 4.78221 4.82354 4.85703 4.95835 4.98825 5.08157 5.08332 5.14774 5.29876 5.35206 5.43117 5.48023 5.87514 6.21909 6.33396 6.86065 7.28726 7.98663 8.27636 9.24038 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003838 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.004378 B = 7294.573240 C = 7898.227588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 C -0.230 4.230 4 C -0.122 4.122 5 C -0.103 4.103 6 C 0.602 3.398 7 O -0.563 6.563 8 N -0.604 5.604 9 C 0.096 3.904 10 C -0.116 4.116 11 C -0.116 4.116 12 C 0.136 3.864 13 H 0.059 0.941 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.254 4.254 17 H 0.067 0.933 18 C -0.069 4.069 19 N -0.965 5.965 20 Si 0.978 3.022 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.282 1.282 24 O -0.161 6.161 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.185 0.815 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.004 0.996 37 H 0.021 0.979 38 H 0.377 0.623 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.104 10.503 -3.234 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.027 4.027 3 C -0.249 4.249 4 C -0.142 4.142 5 C -0.155 4.155 6 C 0.393 3.607 7 O -0.444 6.444 8 N -0.336 5.336 9 C -0.025 4.025 10 C -0.153 4.153 11 C -0.154 4.154 12 C 0.033 3.967 13 H 0.077 0.923 14 C 0.024 3.976 15 N -0.378 5.378 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.261 4.261 19 N -0.615 5.615 20 Si 0.806 3.194 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.209 1.209 24 O -0.058 6.058 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.202 0.798 29 H 0.172 0.828 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.022 0.978 37 H 0.039 0.961 38 H 0.210 0.790 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.535 10.518 -3.073 27.787 hybrid contribution 1.667 -0.018 0.392 1.712 sum -23.869 10.499 -2.681 26.213 Atomic orbital electron populations 1.20685 0.80971 1.05721 1.05872 1.23840 0.96093 0.83530 0.99234 1.21892 0.90734 1.01539 1.10723 1.22200 1.00183 0.92535 0.99320 1.21499 0.81982 0.94259 1.17729 1.16673 0.86502 0.80779 0.76774 1.90888 1.24194 1.76231 1.53132 1.48499 1.10192 1.04011 1.70866 1.22780 0.83871 0.93760 1.02127 1.22858 0.95447 0.95477 1.01564 1.22598 0.96512 0.93176 1.03078 1.21663 0.88560 0.89099 0.97396 0.92281 1.20951 0.88472 0.92493 0.95697 1.42282 1.26453 1.49794 1.19311 1.19521 1.02895 1.19468 0.96698 0.91475 1.25579 1.01000 0.99481 1.00084 1.69798 1.33282 1.31205 1.27238 0.85164 0.78460 0.77240 0.78580 1.19984 1.21397 1.20868 1.84098 1.15150 1.35494 1.71047 0.89337 0.87216 0.87098 0.79761 0.82753 0.90368 0.88118 0.89459 0.86527 0.89765 0.90817 0.97781 0.96086 0.79046 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 71.24 0.74 0.32 16 2 C 0.03 0.41 7.31 24.97 0.18 0.59 16 3 C -0.23 -4.03 10.77 22.07 0.24 -3.79 16 4 C -0.12 -3.11 10.62 22.39 0.24 -2.87 16 5 C -0.10 -3.02 6.94 24.07 0.17 -2.85 16 6 C 0.60 22.30 7.63 86.44 0.66 22.96 16 7 O -0.56 -25.88 15.66 -4.32 -0.07 -25.95 16 8 N -0.60 -20.08 3.06 -792.31 -2.43 -22.50 16 9 C 0.10 2.19 6.35 86.93 0.55 2.75 16 10 C -0.12 -2.31 7.10 32.06 0.23 -2.08 16 11 C -0.12 -3.46 6.24 31.78 0.20 -3.26 16 12 C 0.14 5.18 2.94 45.34 0.13 5.32 16 13 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 14 C 0.15 7.25 5.66 86.38 0.49 7.74 16 15 N -0.73 -40.98 5.42 -343.44 -1.86 -42.84 16 16 C -0.25 -15.37 9.99 84.03 0.84 -14.53 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 19 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 20 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 21 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 24 O -0.16 -3.62 7.77 -5.05 -0.04 -3.66 16 25 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.10 1.97 5.93 -2.39 -0.01 1.96 16 32 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 2.36 7.76 -2.38 -0.02 2.34 16 36 H 0.00 0.23 6.55 -2.38 -0.02 0.22 16 37 H 0.02 1.00 8.01 -2.38 -0.02 0.98 16 38 H 0.38 21.61 7.62 -92.71 -0.71 20.90 16 39 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -78.89 326.57 3.40 -75.49 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.35 Total: 23.15 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.13 Total: 6.61 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -4.01 Total: -125.76 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.11 Total: -29.61 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -78.89 3.40 -75.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270000176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds