Wall clock time and date at job start Tue Mar 31 2020 00:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35132 * 125.61222 * 2 1 4 4 C 1.40374 * 107.11392 * 180.02562 * 3 2 1 5 5 C 1.36542 * 106.70381 * 0.02562 * 4 3 2 6 6 C 1.46662 * 125.98615 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99512 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00083 * 179.97438 * 6 5 4 9 9 C 1.47420 * 125.64938 * 4.77104 * 8 6 5 10 10 C 1.54908 * 104.83490 * 204.15229 * 9 8 6 11 11 C 1.55161 * 101.57808 * 322.99394 * 10 9 8 12 12 C 1.47026 * 125.64588 * 184.80148 * 8 6 5 13 13 H 1.08999 * 110.01087 * 59.42236 * 12 8 6 14 14 C 1.52998 * 109.88068 * 298.33181 * 12 8 6 15 15 N 1.46501 * 109.47250 * 178.01050 * 14 12 8 16 16 C 1.36933 * 120.00343 * 174.92776 * 15 14 12 17 17 H 1.07999 * 119.99686 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99909 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99948 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99563 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47077 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47467 * 299.99889 * 20 18 16 23 23 H 1.48498 * 109.47549 * 60.00400 * 20 18 16 24 24 O 1.33931 * 125.62148 * 180.28744 * 2 1 3 25 25 H 1.09005 * 109.46994 * 90.00074 * 1 2 3 26 26 H 1.09002 * 109.47245 * 209.99828 * 1 2 3 27 27 H 1.09000 * 109.47501 * 330.00836 * 1 2 3 28 28 H 1.07994 * 126.44618 * 0.02562 * 3 2 1 29 29 H 1.07995 * 126.64505 * 179.97438 * 4 3 2 30 30 H 1.09004 * 110.36575 * 85.31626 * 9 8 6 31 31 H 1.09003 * 110.45952 * 323.04253 * 9 8 6 32 32 H 1.08994 * 111.00666 * 204.91722 * 10 9 8 33 33 H 1.09006 * 111.00052 * 81.06250 * 10 9 8 34 34 H 1.08999 * 110.71842 * 277.13098 * 11 10 9 35 35 H 1.09006 * 110.87224 * 153.93653 * 11 10 9 36 36 H 1.09003 * 109.47284 * 58.01486 * 14 12 8 37 37 H 1.08999 * 109.47248 * 298.01474 * 14 12 8 38 38 H 0.97010 * 119.99541 * 354.93278 * 15 14 12 39 39 H 0.97002 * 120.00091 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6251 0.6532 -0.0006 5 6 3.5823 -0.7115 -0.0015 6 6 4.7415 -1.6100 -0.0029 7 8 5.8680 -1.1498 -0.0038 8 7 4.5590 -2.9454 -0.0032 9 6 3.2598 -3.6351 -0.1019 10 6 3.4964 -5.0215 0.5474 11 6 4.9420 -5.3404 0.0826 12 6 5.6228 -3.9555 0.0954 13 1 6.1774 -3.8236 1.0244 14 6 6.5710 -3.8308 -1.0987 15 7 7.6534 -4.8093 -0.9671 16 6 8.5701 -4.9559 -1.9737 17 1 8.4954 -4.3499 -2.8645 18 6 9.5954 -5.8834 -1.8491 19 7 9.6860 -6.6223 -0.7636 20 14 10.8463 -6.0828 -3.2219 21 1 11.8309 -7.1291 -2.8463 22 1 10.1505 -6.4828 -4.4713 23 1 11.5524 -4.7947 -3.4392 24 8 2.2870 -1.0887 -0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1260 0.0004 29 1 4.5112 1.2704 -0.0011 30 1 2.9696 -3.7499 -1.1463 31 1 2.4941 -3.0854 0.4456 32 1 2.7910 -5.7583 0.1634 33 1 3.4404 -4.9585 1.6342 34 1 4.9399 -5.7599 -0.9234 35 1 5.4337 -6.0183 0.7805 36 1 6.9915 -2.8255 -1.1254 37 1 6.0210 -4.0193 -2.0207 38 1 7.7206 -5.3534 -0.1668 39 1 9.0362 -6.5190 -0.0509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270000177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:09 Heat of formation + Delta-G solvation = -3.625778 kcal Electronic energy + Delta-G solvation = -21668.778169 eV Core-core repulsion = 18385.576691 eV Total energy + Delta-G solvation = -3283.201478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.87661 -39.92162 -37.46596 -34.77860 -33.54842 -32.32753 -31.59156 -31.34066 -28.65882 -27.33188 -24.90183 -23.58110 -22.37109 -22.04053 -21.38217 -20.61823 -19.51379 -17.70277 -17.10170 -16.76782 -16.31965 -15.77320 -15.17481 -14.38392 -14.26854 -13.83211 -13.68925 -13.56650 -13.48929 -13.34148 -13.24640 -13.10213 -12.96521 -12.62348 -12.27994 -12.10947 -11.62722 -11.12609 -10.78777 -10.61388 -10.55703 -10.49501 -10.19763 -10.07251 -9.92368 -9.16887 -8.81022 -8.76235 -8.45309 -6.93202 -6.04416 -3.03156 0.94496 2.15218 2.41181 3.01818 3.21046 3.56514 3.60939 3.77816 4.26503 4.53526 4.57635 4.72021 4.74803 4.86387 4.95320 5.02501 5.04488 5.25224 5.34278 5.40149 5.48690 5.57977 5.64092 5.65726 5.74247 5.79634 5.88298 5.92440 6.00167 6.08640 6.18971 6.33068 6.43995 6.71059 6.79163 6.96361 7.51047 7.87757 8.11160 8.81796 9.28962 10.15086 10.30329 11.44434 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.003845 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.789032 B = 7280.597977 C = 7869.806664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.008 3.992 3 C -0.222 4.222 4 C -0.121 4.121 5 C -0.068 4.068 6 C 0.610 3.390 7 O -0.508 6.508 8 N -0.603 5.603 9 C 0.099 3.901 10 C -0.133 4.133 11 C -0.121 4.121 12 C 0.130 3.870 13 H 0.077 0.923 14 C 0.150 3.850 15 N -0.739 5.739 16 C -0.326 4.326 17 H 0.064 0.936 18 C -0.046 4.046 19 N -0.946 5.946 20 Si 1.081 2.919 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.295 1.295 24 O -0.159 6.159 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.022 0.978 38 H 0.366 0.634 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.794 10.995 3.617 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.241 4.241 4 C -0.142 4.142 5 C -0.119 4.119 6 C 0.398 3.602 7 O -0.385 6.385 8 N -0.336 5.336 9 C -0.024 4.024 10 C -0.171 4.171 11 C -0.159 4.159 12 C 0.027 3.973 13 H 0.095 0.905 14 C 0.022 3.978 15 N -0.386 5.386 16 C -0.457 4.457 17 H 0.082 0.918 18 C -0.243 4.243 19 N -0.592 5.592 20 Si 0.912 3.088 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.223 1.223 24 O -0.055 6.055 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.199 0.801 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.908 10.306 2.921 23.492 hybrid contribution -1.365 1.007 0.644 1.814 sum -22.272 11.313 3.565 25.234 Atomic orbital electron populations 1.20387 0.84677 1.04347 1.03879 1.22844 0.94324 0.84457 1.02839 1.21570 0.92341 0.99721 1.10452 1.21946 0.98660 0.92914 1.00686 1.22102 0.81675 0.94535 1.13627 1.16209 0.86091 0.80176 0.77713 1.90937 1.21885 1.75157 1.50511 1.48365 1.09141 1.04418 1.71659 1.22459 0.85432 0.93297 1.01201 1.22803 0.97810 0.95692 1.00831 1.22675 0.94147 0.95592 1.03455 1.21893 0.88394 0.86442 1.00537 0.90460 1.20923 0.88936 0.94399 0.93553 1.42204 1.30526 1.44612 1.21223 1.20027 1.07292 1.20414 0.97984 0.91843 1.25768 0.99841 0.95719 1.03015 1.70883 1.38657 1.42123 1.07509 0.83226 0.75797 0.75860 0.73926 1.21038 1.22319 1.22277 1.84122 1.16099 1.34451 1.70863 0.89659 0.90244 0.89083 0.82789 0.82212 0.91183 0.89895 0.89763 0.90729 0.89729 0.89789 0.94578 0.95971 0.80073 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 36.00 0.37 -0.01 16 2 C 0.01 0.07 7.31 -35.41 -0.26 -0.19 16 3 C -0.22 -2.20 10.77 -39.88 -0.43 -2.63 16 4 C -0.12 -1.55 10.62 -39.39 -0.42 -1.97 16 5 C -0.07 -0.98 6.94 -36.80 -0.26 -1.23 16 6 C 0.61 10.74 7.64 -12.86 -0.10 10.64 16 7 O -0.51 -10.78 15.70 5.19 0.08 -10.70 16 8 N -0.60 -9.80 3.06 -164.55 -0.50 -10.30 16 9 C 0.10 1.22 6.33 -2.53 -0.02 1.20 16 10 C -0.13 -1.50 7.09 -24.58 -0.17 -1.67 16 11 C -0.12 -1.82 6.08 -24.90 -0.15 -1.97 16 12 C 0.13 2.37 2.98 -66.95 -0.20 2.17 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 14 C 0.15 3.44 5.62 -4.04 -0.02 3.41 16 15 N -0.74 -19.77 5.37 -59.91 -0.32 -20.09 16 16 C -0.33 -9.73 9.99 -15.06 -0.15 -9.88 16 17 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 19 N -0.95 -29.97 13.70 55.49 0.76 -29.21 16 20 Si 1.08 26.89 29.92 -169.99 -5.09 21.81 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 24 O -0.16 -1.93 7.77 5.02 0.04 -1.89 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.16 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.92 5.95 -51.93 -0.31 0.61 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.39 7.81 -51.93 -0.41 0.98 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.04 0.93 6.63 -51.93 -0.34 0.58 16 37 H 0.02 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.37 9.75 6.35 -40.82 -0.26 9.49 16 39 H 0.25 7.88 6.77 -40.82 -0.28 7.61 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -35.89 324.81 -7.48 -43.37 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.45 Total: 5.74 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.90 Total: -3.62 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.07 Total: -59.60 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.12 Total: -12.59 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.09 Total: 21.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.89 -7.48 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270000177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.741 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds