Wall clock time and date at job start Tue Mar 31 2020 01:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35125 * 126.43798 * 2 1 4 4 O 1.33937 * 108.76514 * 179.77109 * 3 2 1 5 5 C 1.34913 * 109.38053 * 0.38036 * 4 3 2 6 6 C 1.46659 * 125.98441 * 179.88983 * 5 4 3 7 7 O 1.21696 * 119.99780 * 179.69344 * 6 5 4 8 8 N 1.34780 * 120.00206 * 359.68376 * 6 5 4 9 9 C 1.47426 * 125.64352 * 4.76867 * 8 6 5 10 10 C 1.54914 * 104.82758 * 204.16109 * 9 8 6 11 11 C 1.55154 * 101.58459 * 322.99104 * 10 9 8 12 12 C 1.47015 * 125.64801 * 184.80904 * 8 6 5 13 13 H 1.08998 * 109.88514 * 59.33694 * 12 8 6 14 14 C 1.53000 * 109.88339 * 298.32077 * 12 8 6 15 15 N 1.46492 * 109.47362 * 175.96561 * 14 12 8 16 16 C 1.36941 * 120.00282 * 174.94173 * 15 14 12 17 17 H 1.07997 * 119.99554 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00435 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46900 * 270.00151 * 20 18 16 22 22 H 1.48497 * 109.46712 * 30.00459 * 20 18 16 23 23 H 1.48497 * 109.47043 * 150.00057 * 20 18 16 24 24 C 1.36545 * 108.02637 * 359.62109 * 5 4 3 25 25 H 1.09005 * 109.47206 * 269.99906 * 1 2 3 26 26 H 1.08994 * 109.47017 * 29.99729 * 1 2 3 27 27 H 1.08997 * 109.46784 * 150.00252 * 1 2 3 28 28 H 1.08006 * 125.62097 * 359.97438 * 3 2 1 29 29 H 1.08996 * 110.36844 * 322.99895 * 9 8 6 30 30 H 1.09005 * 110.36654 * 85.21566 * 9 8 6 31 31 H 1.08996 * 111.00356 * 81.06678 * 10 9 8 32 32 H 1.09000 * 111.00193 * 204.91970 * 10 9 8 33 33 H 1.09004 * 110.72010 * 277.14160 * 11 10 9 34 34 H 1.08993 * 110.72395 * 153.86642 * 11 10 9 35 35 H 1.09007 * 109.46736 * 55.96622 * 14 12 8 36 36 H 1.09004 * 109.47551 * 295.96895 * 14 12 8 37 37 H 0.97002 * 120.00134 * 354.94516 * 15 14 12 38 38 H 0.97008 * 119.99893 * 359.97438 * 19 18 16 39 39 H 1.07997 * 126.64342 * 180.19290 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0051 5 6 3.6260 -0.6680 -0.0001 6 6 4.8379 -1.4940 0.0007 7 8 4.7471 -2.7076 0.0014 8 7 6.0522 -0.9090 0.0006 9 6 6.3080 0.5395 0.0993 10 6 7.6995 0.7415 -0.5508 11 6 8.4487 -0.5354 -0.0866 12 6 7.3408 -1.6098 -0.0988 13 1 7.3829 -2.1783 -1.0278 14 6 7.5151 -2.5505 1.0951 15 7 8.7553 -3.3141 0.9382 16 6 9.1765 -4.1491 1.9386 17 1 8.5941 -4.2449 2.8430 18 6 10.3515 -4.8730 1.7897 19 7 11.0610 -4.7567 0.6872 20 14 10.9257 -6.0126 3.1540 21 1 11.7995 -5.2618 4.0910 22 1 9.7471 -6.5378 3.8890 23 1 11.6869 -7.1441 2.5662 24 6 2.3408 -1.1291 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9769 2.1146 -0.0004 29 1 5.5486 1.0970 -0.4489 30 1 6.3264 0.8512 1.1437 31 1 7.6218 0.7756 -1.6375 32 1 8.1834 1.6396 -0.1669 33 1 8.8476 -0.4042 0.9194 34 1 9.2431 -0.7926 -0.7870 35 1 6.6695 -3.2367 1.1434 36 1 7.5618 -1.9663 2.0143 37 1 9.2782 -3.2283 0.1258 38 1 10.7627 -4.1652 -0.0214 39 1 2.0267 -2.1624 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270113701.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:00 Heat of formation + Delta-G solvation = -4.479950 kcal Electronic energy + Delta-G solvation = -21593.372648 eV Core-core repulsion = 18310.134130 eV Total energy + Delta-G solvation = -3283.238518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.88659 -39.92655 -37.46805 -34.81064 -34.42263 -31.94319 -31.35024 -30.49330 -28.59664 -27.45931 -25.07689 -24.04912 -22.50040 -21.96460 -21.19982 -20.56665 -19.10727 -17.56306 -17.17462 -16.71101 -16.50986 -16.12362 -15.23937 -14.35349 -14.22341 -13.97313 -13.69482 -13.59873 -13.46790 -13.43115 -13.11634 -13.05618 -12.84268 -12.63370 -12.22133 -11.93177 -11.63771 -11.13053 -10.78298 -10.60541 -10.56606 -10.49323 -10.07864 -9.95411 -9.90641 -9.17130 -8.85697 -8.79091 -8.49152 -6.92913 -6.04491 -3.03255 0.95556 2.11026 2.49928 3.03929 3.19488 3.56265 3.61973 3.75960 4.30506 4.53707 4.57001 4.68432 4.74442 4.81810 4.96556 5.10104 5.31097 5.33843 5.36770 5.44313 5.51225 5.58946 5.65627 5.70280 5.74440 5.79578 5.87887 5.92030 5.99776 6.07885 6.18863 6.32674 6.42782 6.68967 6.77475 6.96313 7.50137 7.88230 8.10063 8.81871 9.29021 10.15128 10.30249 11.44447 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.003849 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.332982 B = 7273.287843 C = 8014.702030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.193 4.193 3 C -0.020 4.020 4 O -0.159 6.159 5 C -0.062 4.062 6 C 0.609 3.391 7 O -0.507 6.507 8 N -0.602 5.602 9 C 0.098 3.902 10 C -0.134 4.134 11 C -0.120 4.120 12 C 0.130 3.870 13 H 0.078 0.922 14 C 0.150 3.850 15 N -0.739 5.739 16 C -0.326 4.326 17 H 0.064 0.936 18 C -0.047 4.047 19 N -0.946 5.946 20 Si 1.084 2.916 21 H -0.296 1.296 22 H -0.295 1.295 23 H -0.288 1.288 24 C -0.123 4.123 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.207 0.793 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.022 0.978 37 H 0.366 0.634 38 H 0.254 0.746 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.915 17.319 -3.409 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.194 4.194 3 C -0.090 4.090 4 O -0.055 6.055 5 C -0.114 4.114 6 C 0.397 3.603 7 O -0.384 6.384 8 N -0.336 5.336 9 C -0.024 4.024 10 C -0.172 4.172 11 C -0.158 4.158 12 C 0.027 3.973 13 H 0.096 0.904 14 C 0.022 3.978 15 N -0.386 5.386 16 C -0.457 4.457 17 H 0.082 0.918 18 C -0.244 4.244 19 N -0.592 5.592 20 Si 0.915 3.085 21 H -0.224 1.224 22 H -0.222 1.222 23 H -0.214 1.214 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.199 0.801 38 H 0.065 0.935 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.705 15.697 -2.732 23.085 hybrid contribution -1.323 1.169 -0.628 1.874 sum -18.028 16.866 -3.360 24.915 Atomic orbital electron populations 1.20179 0.88702 1.02782 1.02317 1.20474 0.97649 0.92431 1.08852 1.24195 0.80378 0.99945 1.04448 1.84180 1.28833 1.21834 1.70607 1.22121 0.96041 0.80381 1.12818 1.16218 0.80205 0.86111 0.77779 1.90942 1.85159 1.11920 1.50387 1.48374 1.05262 1.08331 1.71610 1.22473 0.97852 0.80878 1.01228 1.22804 0.94603 0.98902 1.00845 1.22680 0.96806 0.92950 1.03410 1.21903 0.80856 0.93960 1.00560 0.90441 1.20928 0.90701 0.92673 0.93521 1.42205 1.24131 1.52010 1.20216 1.20056 1.07732 1.20462 0.97430 0.91803 1.25767 0.94238 1.01523 1.02838 1.70853 1.40656 1.40829 1.06896 0.83181 0.75271 0.76025 0.74053 1.22369 1.22169 1.21382 1.21840 0.90490 1.00637 1.01409 0.91271 0.91534 0.91275 0.77649 0.89830 0.91135 0.90714 0.89760 0.89745 0.89789 0.94579 0.95971 0.80085 0.93472 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.17 16 2 C -0.19 -1.86 6.14 -104.93 -0.64 -2.51 16 3 C -0.02 -0.17 12.00 29.62 0.36 0.18 16 4 O -0.16 -1.83 7.77 4.98 0.04 -1.79 16 5 C -0.06 -0.87 6.94 -36.80 -0.26 -1.13 16 6 C 0.61 10.59 7.64 -12.86 -0.10 10.49 16 7 O -0.51 -10.71 15.67 5.19 0.08 -10.63 16 8 N -0.60 -9.67 3.06 -164.54 -0.50 -10.18 16 9 C 0.10 1.19 6.33 -2.53 -0.02 1.17 16 10 C -0.13 -1.48 7.08 -24.58 -0.17 -1.65 16 11 C -0.12 -1.80 6.18 -24.89 -0.15 -1.95 16 12 C 0.13 2.35 2.96 -66.95 -0.20 2.15 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 14 C 0.15 3.42 5.64 -4.05 -0.02 3.39 16 15 N -0.74 -19.73 5.40 -59.91 -0.32 -20.06 16 16 C -0.33 -9.70 9.99 -15.06 -0.15 -9.85 16 17 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16 19 N -0.95 -29.99 13.70 55.49 0.76 -29.23 16 20 Si 1.08 26.95 29.92 -169.99 -5.09 21.86 16 21 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.12 -1.55 10.57 -39.40 -0.42 -1.97 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.08 0.89 5.95 -51.93 -0.31 0.59 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.36 7.78 -51.93 -0.40 0.96 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.04 0.92 6.58 -51.93 -0.34 0.58 16 36 H 0.02 0.51 8.05 -51.93 -0.42 0.10 16 37 H 0.37 9.74 6.41 -40.82 -0.26 9.48 16 38 H 0.25 7.89 6.78 -40.82 -0.28 7.62 16 39 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -35.78 324.83 -7.08 -42.86 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.45 Total: 5.61 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.50 Total: -3.34 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.07 Total: -59.46 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.12 Total: -12.42 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -5.09 Total: 21.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.78 -7.08 -42.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270113701.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.381 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds