Wall clock time and date at job start Tue Mar 31 2020 00:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.45639 * 2 1 4 4 C 1.36937 * 120.00055 * 60.02886 * 3 2 1 5 5 H 1.07999 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.38807 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31612 * 120.00260 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99802 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47510 * 270.00458 * 8 6 4 10 10 H 1.48503 * 109.46943 * 30.00268 * 8 6 4 11 11 H 1.48503 * 109.47360 * 150.00014 * 8 6 4 12 12 C 1.53037 * 109.44713 * 119.96495 * 2 1 3 13 13 C 1.53193 * 109.31341 * 181.38092 * 12 2 1 14 14 N 1.46921 * 108.77367 * 305.36811 * 13 12 2 15 15 C 1.34781 * 120.62863 * 233.58369 * 14 13 12 16 16 O 1.21697 * 120.00196 * 172.67730 * 15 14 13 17 17 C 1.46654 * 119.99953 * 352.68402 * 15 14 13 18 18 C 1.36542 * 125.98980 * 172.44387 * 17 15 14 19 19 C 1.40367 * 106.71006 * 179.90266 * 18 17 15 20 20 C 1.35128 * 107.11114 * 0.35471 * 19 18 17 21 21 O 1.33930 * 108.77018 * 359.77827 * 20 19 18 22 22 C 1.46923 * 118.74257 * 53.60469 * 14 13 12 23 23 C 1.53042 * 109.46164 * 240.02646 * 2 1 3 24 24 H 1.09008 * 109.47165 * 59.99856 * 1 2 3 25 25 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47671 * 300.00414 * 1 2 3 27 27 H 0.96996 * 119.99771 * 240.02240 * 3 2 1 28 28 H 0.97001 * 120.00271 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.49822 * 301.33371 * 12 2 1 30 30 H 1.08994 * 109.49817 * 61.42496 * 12 2 1 31 31 H 1.08997 * 109.58623 * 185.57659 * 13 12 2 32 32 H 1.09004 * 109.58524 * 65.14923 * 13 12 2 33 33 H 1.07997 * 126.64451 * 0.03831 * 18 17 15 34 34 H 1.07997 * 126.44054 * 180.15017 * 19 18 17 35 35 H 1.08009 * 125.61249 * 179.77796 * 20 19 18 36 36 H 1.09000 * 109.58851 * 186.60280 * 22 14 13 37 37 H 1.09000 * 109.58369 * 66.17916 * 22 14 13 38 38 H 1.08991 * 109.49481 * 298.58035 * 23 2 1 39 39 H 1.09005 * 109.49473 * 58.64505 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6875 2.2243 1.0273 5 1 1.0667 1.8709 1.8373 6 6 2.1502 3.5330 1.0276 7 7 1.8322 4.3433 2.0147 8 14 3.2245 4.1440 -0.3731 9 1 4.6522 3.9015 -0.0441 10 1 2.8735 3.4171 -1.6196 11 1 3.0020 5.5991 -0.5692 12 6 2.0395 -0.7208 1.2502 13 6 3.5711 -0.6889 1.2646 14 7 4.0676 -1.2492 0.0004 15 6 4.9617 -2.2577 0.0006 16 8 5.2648 -2.8024 -1.0446 17 6 5.5691 -2.6989 1.2604 18 6 6.3707 -3.7920 1.4252 19 6 6.7245 -3.8320 2.7829 20 6 6.1245 -2.7795 3.3813 21 8 5.4293 -2.0991 2.4607 22 6 3.5714 -0.6890 -1.2639 23 6 2.0399 -0.7209 -1.2500 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.5753 1.6988 -0.7277 28 1 2.1559 5.2577 2.0151 29 1 1.6568 -0.2206 2.1398 30 1 1.6973 -1.7555 1.2384 31 1 3.9411 -1.2848 2.0988 32 1 3.9141 0.3406 1.3677 33 1 6.6753 -4.4893 0.6588 34 1 7.3548 -4.5678 3.2602 35 1 6.1941 -2.5283 4.4295 36 1 3.9417 -1.2850 -2.0980 37 1 3.9145 0.3405 -1.3670 38 1 1.6977 -1.7556 -1.2382 39 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274306501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:04 Heat of formation + Delta-G solvation = 8.419321 kcal Electronic energy + Delta-G solvation = -22621.993031 eV Core-core repulsion = 19339.313868 eV Total energy + Delta-G solvation = -3282.679163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.77358 -39.87648 -37.92641 -34.75003 -33.14166 -32.36994 -31.15033 -29.91652 -29.59377 -27.78789 -24.27533 -23.35041 -23.08571 -21.84899 -21.69207 -20.10251 -18.55317 -17.80098 -17.29800 -16.63482 -16.35168 -15.74283 -14.91446 -14.52780 -14.27572 -13.94043 -13.75706 -13.47318 -13.18457 -13.07902 -13.05646 -12.72865 -12.49270 -12.04223 -11.88564 -11.41794 -11.28917 -11.00768 -10.88178 -10.83467 -10.40046 -10.21574 -10.13570 -9.93521 -9.80221 -9.50097 -8.97759 -8.82213 -8.34143 -7.29475 -5.79620 -3.15014 1.05922 2.28879 2.63252 3.18905 3.29601 3.34321 3.37064 3.43577 4.50714 4.56173 4.81056 4.87704 5.10079 5.20411 5.23099 5.41917 5.45052 5.55433 5.63168 5.65429 5.68835 5.78950 5.92924 5.96101 6.12713 6.14532 6.23577 6.27924 6.40469 6.42384 6.54074 6.61193 6.71199 6.83699 6.93919 7.00319 7.54068 7.96160 8.14209 8.39707 9.17555 9.90549 10.10473 11.38587 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.005846 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.134831 B = 4788.522484 C = 5166.801547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 N -0.742 5.742 4 C -0.236 4.236 5 H 0.092 0.908 6 C 0.007 3.993 7 N -0.934 5.934 8 Si 0.877 3.123 9 H -0.285 1.285 10 H -0.278 1.278 11 H -0.292 1.292 12 C -0.132 4.132 13 C 0.103 3.897 14 N -0.591 5.591 15 C 0.596 3.404 16 O -0.537 6.537 17 C -0.069 4.069 18 C -0.128 4.128 19 C -0.227 4.227 20 C -0.016 4.016 21 O -0.150 6.150 22 C 0.115 3.885 23 C -0.133 4.133 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.360 0.640 28 H 0.259 0.741 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.208 0.792 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -15.170 0.207 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 N -0.386 5.386 4 C -0.366 4.366 5 H 0.110 0.890 6 C -0.189 4.189 7 N -0.581 5.581 8 Si 0.708 3.292 9 H -0.212 1.212 10 H -0.204 1.204 11 H -0.218 1.218 12 C -0.172 4.172 13 C -0.018 4.018 14 N -0.322 5.322 15 C 0.384 3.616 16 O -0.417 6.417 17 C -0.121 4.121 18 C -0.149 4.149 19 C -0.246 4.246 20 C -0.086 4.086 21 O -0.046 6.046 22 C -0.007 4.007 23 C -0.171 4.171 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.194 0.806 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.224 0.776 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.734 -15.034 -0.115 16.091 hybrid contribution 0.884 0.556 -0.704 1.259 sum 6.618 -14.478 -0.819 15.940 Atomic orbital electron populations 1.22183 0.96844 0.99290 1.02524 1.19513 0.92547 0.85053 0.91721 1.42892 1.61572 1.07663 1.26496 1.18962 1.26344 0.91398 0.99862 0.88983 1.24617 1.00523 0.96333 0.97439 1.69682 1.49748 1.06422 1.32293 0.86674 0.81181 0.78270 0.83111 1.21212 1.20377 1.21847 1.22277 0.94291 0.99291 1.01326 1.22194 0.95288 1.00609 0.83692 1.48072 1.41364 1.33669 1.09050 1.16727 0.79317 0.79935 0.85585 1.90827 1.63861 1.56391 1.30599 1.22156 1.06770 0.97980 0.85150 1.21918 0.98071 0.97617 0.97249 1.21808 1.06627 1.01943 0.94270 1.24566 0.95368 0.93387 0.95240 1.84373 1.56065 1.47661 1.16496 1.21635 0.94578 0.98955 0.85504 1.22144 0.94533 1.01048 0.99418 0.93135 0.94325 0.91958 0.80614 0.93123 0.89915 0.93087 0.89010 0.89246 0.82501 0.82868 0.77579 0.89327 0.91019 0.91257 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.44 37.16 0.31 -2.23 16 2 C 0.20 3.58 0.74 -131.77 -0.10 3.48 16 3 N -0.74 -15.98 3.94 -47.19 -0.19 -16.16 16 4 C -0.24 -6.08 9.16 -15.06 -0.14 -6.22 16 5 H 0.09 2.55 6.93 -52.49 -0.36 2.18 16 6 C 0.01 0.18 5.50 -17.44 -0.10 0.09 16 7 N -0.93 -28.20 13.97 55.49 0.78 -27.42 16 8 Si 0.88 21.43 27.74 -169.99 -4.71 16.72 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 C -0.13 -2.21 4.71 -26.61 -0.13 -2.34 16 13 C 0.10 1.73 5.85 -3.71 -0.02 1.71 16 14 N -0.59 -9.78 2.97 -174.32 -0.52 -10.30 16 15 C 0.60 10.03 7.65 -12.86 -0.10 9.93 16 16 O -0.54 -10.03 16.30 5.19 0.08 -9.94 16 17 C -0.07 -1.01 6.77 -36.80 -0.25 -1.26 16 18 C -0.13 -1.60 10.63 -39.39 -0.42 -2.02 16 19 C -0.23 -2.27 10.88 -39.89 -0.43 -2.71 16 20 C -0.02 -0.16 12.08 29.63 0.36 0.20 16 21 O -0.15 -2.03 7.25 5.00 0.04 -1.99 16 22 C 0.12 1.84 6.17 -3.71 -0.02 1.82 16 23 C -0.13 -2.03 4.96 -26.61 -0.13 -2.17 16 24 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.18 7.27 -51.93 -0.38 0.80 16 27 H 0.36 7.83 4.32 -40.82 -0.18 7.66 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.08 1.51 7.31 -51.93 -0.38 1.13 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.42 4.24 -53.07 -0.22 1.20 16 32 H 0.09 1.73 7.74 -51.93 -0.40 1.33 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.21 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 37 H 0.07 1.21 6.94 -51.93 -0.36 0.84 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -31.14 311.35 -6.19 -37.34 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.20 Total: 8.79 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.16 Total: -1.72 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.07 Total: -53.88 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.12 Total: -11.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.14 -6.19 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274306501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.755 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds