Wall clock time and date at job start Tue Mar 31 2020 00:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.45639 * 2 1 4 4 C 1.36937 * 120.00055 * 60.02886 * 3 2 1 5 5 H 1.07999 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.38807 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31612 * 120.00260 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99802 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47510 * 270.00458 * 8 6 4 10 10 H 1.48503 * 109.46943 * 30.00268 * 8 6 4 11 11 H 1.48503 * 109.47360 * 150.00014 * 8 6 4 12 12 C 1.53037 * 109.44713 * 119.96495 * 2 1 3 13 13 C 1.53193 * 109.31341 * 181.38092 * 12 2 1 14 14 N 1.46921 * 108.77367 * 305.36811 * 13 12 2 15 15 C 1.34781 * 120.62863 * 233.58369 * 14 13 12 16 16 O 1.21697 * 120.00196 * 172.67730 * 15 14 13 17 17 C 1.46654 * 119.99953 * 352.68402 * 15 14 13 18 18 C 1.36542 * 125.98980 * 172.44387 * 17 15 14 19 19 C 1.40367 * 106.71006 * 179.90266 * 18 17 15 20 20 C 1.35128 * 107.11114 * 0.35471 * 19 18 17 21 21 O 1.33930 * 108.77018 * 359.77827 * 20 19 18 22 22 C 1.46923 * 118.74257 * 53.60469 * 14 13 12 23 23 C 1.53042 * 109.46164 * 240.02646 * 2 1 3 24 24 H 1.09008 * 109.47165 * 59.99856 * 1 2 3 25 25 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47671 * 300.00414 * 1 2 3 27 27 H 0.96996 * 119.99771 * 240.02240 * 3 2 1 28 28 H 0.97001 * 120.00271 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.49822 * 301.33371 * 12 2 1 30 30 H 1.08994 * 109.49817 * 61.42496 * 12 2 1 31 31 H 1.08997 * 109.58623 * 185.57659 * 13 12 2 32 32 H 1.09004 * 109.58524 * 65.14923 * 13 12 2 33 33 H 1.07997 * 126.64451 * 0.03831 * 18 17 15 34 34 H 1.07997 * 126.44054 * 180.15017 * 19 18 17 35 35 H 1.08009 * 125.61249 * 179.77796 * 20 19 18 36 36 H 1.09000 * 109.58851 * 186.60280 * 22 14 13 37 37 H 1.09000 * 109.58369 * 66.17916 * 22 14 13 38 38 H 1.08991 * 109.49481 * 298.58035 * 23 2 1 39 39 H 1.09005 * 109.49473 * 58.64505 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6875 2.2243 1.0273 5 1 1.0667 1.8709 1.8373 6 6 2.1502 3.5330 1.0276 7 7 1.8322 4.3433 2.0147 8 14 3.2245 4.1440 -0.3731 9 1 4.6522 3.9015 -0.0441 10 1 2.8735 3.4171 -1.6196 11 1 3.0020 5.5991 -0.5692 12 6 2.0395 -0.7208 1.2502 13 6 3.5711 -0.6889 1.2646 14 7 4.0676 -1.2492 0.0004 15 6 4.9617 -2.2577 0.0006 16 8 5.2648 -2.8024 -1.0446 17 6 5.5691 -2.6989 1.2604 18 6 6.3707 -3.7920 1.4252 19 6 6.7245 -3.8320 2.7829 20 6 6.1245 -2.7795 3.3813 21 8 5.4293 -2.0991 2.4607 22 6 3.5714 -0.6890 -1.2639 23 6 2.0399 -0.7209 -1.2500 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.5753 1.6988 -0.7277 28 1 2.1559 5.2577 2.0151 29 1 1.6568 -0.2206 2.1398 30 1 1.6973 -1.7555 1.2384 31 1 3.9411 -1.2848 2.0988 32 1 3.9141 0.3406 1.3677 33 1 6.6753 -4.4893 0.6588 34 1 7.3548 -4.5678 3.2602 35 1 6.1941 -2.5283 4.4295 36 1 3.9417 -1.2850 -2.0980 37 1 3.9145 0.3405 -1.3670 38 1 1.6977 -1.7556 -1.2382 39 1 1.6570 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274306501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:03 Heat of formation + Delta-G solvation = -11.725446 kcal Electronic energy + Delta-G solvation = -22622.866574 eV Core-core repulsion = 19339.313868 eV Total energy + Delta-G solvation = -3283.552706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.71307 -41.18663 -39.33314 -36.23858 -34.33543 -33.97619 -32.46222 -31.61000 -30.78811 -29.09618 -25.77286 -24.96230 -24.42153 -22.96860 -22.67779 -21.25046 -19.92470 -19.75711 -18.56205 -17.74305 -17.40636 -16.90430 -16.45442 -16.23444 -15.70890 -15.32315 -15.10474 -14.91028 -14.50636 -14.41982 -14.09633 -14.07631 -13.67053 -13.54798 -13.22627 -12.94797 -12.74290 -12.67434 -12.60498 -12.17146 -12.01953 -11.79943 -11.65461 -11.32857 -11.16204 -11.02675 -10.83831 -9.92206 -9.55617 -9.20444 -7.94199 -5.25126 0.03408 1.38560 1.39380 1.44103 1.46453 1.61417 2.02761 2.15777 2.52316 3.37996 3.43798 3.54757 3.88095 3.92261 4.00126 4.09467 4.11587 4.23149 4.36181 4.53384 4.56280 4.68051 4.78624 4.81181 4.90903 4.95068 4.95985 5.04015 5.11524 5.13115 5.25707 5.29847 5.44167 5.54559 5.60285 5.89322 5.91438 6.27822 6.30556 6.89042 7.16311 7.92934 8.11015 9.27417 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.005846 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.134831 B = 4788.522484 C = 5166.801547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.192 3.808 3 N -0.743 5.743 4 C -0.198 4.198 5 H 0.067 0.933 6 C -0.062 4.062 7 N -0.985 5.985 8 Si 0.935 3.065 9 H -0.288 1.288 10 H -0.253 1.253 11 H -0.304 1.304 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.594 5.594 15 C 0.595 3.405 16 O -0.563 6.563 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.228 4.228 20 C -0.003 4.003 21 O -0.170 6.170 22 C 0.113 3.887 23 C -0.123 4.123 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.361 0.639 28 H 0.253 0.747 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -17.546 -0.119 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.103 3.897 3 N -0.386 5.386 4 C -0.330 4.330 5 H 0.085 0.915 6 C -0.253 4.253 7 N -0.637 5.637 8 Si 0.765 3.235 9 H -0.215 1.215 10 H -0.178 1.178 11 H -0.231 1.231 12 C -0.166 4.166 13 C -0.009 4.009 14 N -0.324 5.324 15 C 0.385 3.615 16 O -0.446 6.446 17 C -0.162 4.162 18 C -0.140 4.140 19 C -0.246 4.246 20 C -0.072 4.072 21 O -0.066 6.066 22 C -0.009 4.009 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.195 0.805 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.204 0.796 35 H 0.264 0.736 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.561 -17.471 -0.477 18.669 hybrid contribution 0.651 1.123 -0.481 1.384 sum 7.211 -16.348 -0.958 17.894 Atomic orbital electron populations 1.22101 0.96008 1.00953 1.01157 1.19836 0.93080 0.83219 0.93571 1.42925 1.61518 1.08887 1.25293 1.18890 1.23295 0.91352 0.99429 0.91526 1.25253 1.03047 0.97005 0.99961 1.69844 1.52425 1.06612 1.34824 0.85698 0.79248 0.77099 0.81461 1.21465 1.17768 1.23092 1.22193 0.94309 1.00201 0.99882 1.22009 0.95098 0.99103 0.84672 1.48084 1.41613 1.33787 1.08901 1.16982 0.78820 0.79457 0.86229 1.90794 1.64680 1.57287 1.31799 1.21877 1.09403 0.99769 0.85170 1.22233 0.96527 0.96516 0.98765 1.22191 1.06804 1.02622 0.92989 1.25486 0.93182 0.92347 0.96172 1.84284 1.57155 1.48503 1.16656 1.21664 0.95101 0.98442 0.85728 1.22079 0.93846 1.01818 0.98352 0.93225 0.91183 0.94558 0.80495 0.93830 0.91905 0.90761 0.87552 0.92476 0.81950 0.79605 0.73605 0.88655 0.92150 0.89357 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.44 71.98 0.61 -4.04 16 2 C 0.19 6.52 0.74 3.63 0.00 6.52 16 3 N -0.74 -31.53 3.94 -303.22 -1.19 -32.73 16 4 C -0.20 -10.39 9.16 84.03 0.77 -9.62 16 5 H 0.07 3.81 6.93 -2.91 -0.02 3.79 16 6 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 7 N -0.99 -61.51 13.97 21.65 0.30 -61.21 16 8 Si 0.94 44.83 27.74 68.60 1.90 46.73 16 9 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 11 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 12 C -0.13 -4.10 4.71 30.67 0.14 -3.96 16 13 C 0.11 3.72 5.85 86.36 0.51 4.22 16 14 N -0.59 -19.11 2.97 -823.65 -2.45 -21.56 16 15 C 0.60 19.56 7.65 86.44 0.66 20.22 16 16 O -0.56 -20.68 16.30 -4.34 -0.07 -20.75 16 17 C -0.11 -3.13 6.77 24.07 0.16 -2.97 16 18 C -0.12 -2.75 10.63 22.39 0.24 -2.51 16 19 C -0.23 -3.74 10.88 22.07 0.24 -3.50 16 20 C 0.00 -0.05 12.08 67.10 0.81 0.76 16 21 O -0.17 -4.28 7.25 -5.03 -0.04 -4.32 16 22 C 0.11 3.44 6.17 86.36 0.53 3.98 16 23 C -0.12 -3.45 4.96 30.67 0.15 -3.30 16 24 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.04 1.35 7.27 -2.39 -0.02 1.33 16 27 H 0.36 15.27 4.32 -92.71 -0.40 14.86 16 28 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.06 2.30 7.31 -2.39 -0.02 2.28 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 3.22 4.24 -20.51 -0.09 3.13 16 32 H 0.06 2.25 7.74 -2.38 -0.02 2.23 16 33 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.25 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.10 2.80 7.00 -2.39 -0.02 2.79 16 37 H 0.06 1.97 6.94 -2.39 -0.02 1.95 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -69.26 311.35 4.28 -64.98 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.53 Total: 26.10 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.29 Total: 2.76 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.34 Total: -115.50 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.11 Total: -25.07 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Total: -69.26 4.28 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274306501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.251 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds