Wall clock time and date at job start Tue Mar 31 2020 00:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33658 * 125.80005 * 2 1 4 4 C 1.34210 * 110.90678 * 179.97438 * 3 2 1 5 5 C 1.34180 * 109.12682 * 359.70424 * 4 3 2 6 6 C 1.36409 * 125.80135 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.19641 * 0.02562 * 6 2 1 8 8 O 1.21624 * 119.99500 * 359.97438 * 7 6 2 9 9 N 1.34773 * 120.00507 * 180.02562 * 7 6 2 10 10 C 1.46503 * 120.00358 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46913 * 34.99538 * 10 9 7 12 12 C 1.52997 * 109.47269 * 154.99590 * 10 9 7 13 13 N 1.46505 * 109.47212 * 304.99931 * 12 10 9 14 14 C 1.36936 * 119.99992 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00093 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00176 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00265 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46951 * 89.99797 * 18 16 14 20 20 H 1.48500 * 109.47313 * 210.00112 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00153 * 18 16 14 22 22 C 1.52997 * 109.46834 * 274.99972 * 10 9 7 23 23 C 1.53002 * 117.50022 * 128.74672 * 22 10 9 24 24 C 1.52997 * 117.50076 * 60.08477 * 22 10 9 25 25 H 1.08999 * 109.47032 * 270.00345 * 1 2 3 26 26 H 1.09000 * 109.46740 * 29.99963 * 1 2 3 27 27 H 1.09001 * 109.46955 * 149.99955 * 1 2 3 28 28 H 1.08000 * 125.43836 * 179.97438 * 4 3 2 29 29 H 1.07995 * 127.02803 * 180.26967 * 5 4 3 30 30 H 0.97007 * 119.99723 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 184.99923 * 12 10 9 32 32 H 1.09001 * 109.46832 * 65.00114 * 12 10 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 34 34 H 0.97001 * 120.00803 * 179.97438 * 17 16 14 35 35 H 1.09003 * 115.54905 * 274.41110 * 22 10 9 36 36 H 1.09000 * 117.49650 * 359.97438 * 23 22 10 37 37 H 1.09001 * 117.49817 * 145.01411 * 23 22 10 38 38 H 1.08996 * 117.49862 * 214.97497 * 24 22 10 39 39 H 1.08996 * 117.50355 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0841 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6850 -0.5990 0.0075 6 6 2.3050 -1.1063 0.0005 7 6 1.8741 -2.5157 0.0006 8 8 0.6890 -2.7891 0.0007 9 7 2.7931 -3.5015 0.0016 10 6 2.3647 -4.9025 0.0012 11 1 1.4540 -5.0037 -0.5892 12 6 3.4663 -5.7725 -0.6073 13 7 3.8092 -5.2661 -1.9386 14 6 4.7774 -5.8893 -2.6798 15 1 5.2880 -6.7545 -2.2830 16 6 5.1026 -5.4092 -3.9408 17 7 4.4808 -4.3547 -4.4241 18 14 6.4229 -6.2598 -4.9522 19 1 5.8011 -7.3183 -5.7879 20 1 7.0919 -5.2657 -5.8294 21 1 7.4253 -6.8718 -4.0434 22 6 2.0937 -5.3533 1.4379 23 6 0.7501 -6.0262 1.7257 24 6 1.0157 -4.6029 2.2224 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 4.4173 1.4285 0.0003 29 1 4.5928 -1.1839 0.0137 30 1 3.7383 -3.2833 0.0019 31 1 3.1137 -6.8006 -0.6894 32 1 4.3487 -5.7410 0.0319 33 1 3.3509 -4.4889 -2.2946 34 1 4.7083 -4.0188 -5.3052 35 1 2.9632 -5.7087 1.9910 36 1 0.0590 -6.1473 0.8915 37 1 0.7356 -6.8239 2.4683 38 1 1.1757 -4.4648 3.2917 39 1 0.4998 -3.7876 1.7153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276535205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:30 Heat of formation + Delta-G solvation = 11.885523 kcal Electronic energy + Delta-G solvation = -21783.045660 eV Core-core repulsion = 18500.516802 eV Total energy + Delta-G solvation = -3282.528858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.46019 -39.53459 -37.07106 -34.98205 -33.45394 -32.79909 -31.80020 -30.97250 -28.19066 -26.67971 -24.12931 -23.15843 -22.08595 -21.53220 -21.10806 -19.91555 -19.57707 -17.81620 -17.07441 -16.26121 -16.07082 -15.55087 -15.08927 -14.91470 -14.50346 -14.17527 -13.47510 -13.31744 -13.13258 -13.04617 -12.89523 -12.85293 -12.74185 -12.05594 -11.69813 -11.62255 -11.21492 -11.00388 -10.88957 -10.81538 -10.18207 -10.09163 -9.91514 -9.68946 -9.67472 -9.53020 -8.91584 -8.63379 -8.40977 -6.96063 -5.77716 -3.07875 1.50752 2.17026 2.87628 3.42150 3.47154 3.48991 3.51494 3.64571 4.20334 4.55750 4.59484 4.92538 4.96576 5.00806 5.21215 5.29677 5.33487 5.48510 5.51921 5.55343 5.62883 5.73673 5.82432 5.88035 5.92446 5.95123 6.11722 6.20657 6.25399 6.37496 6.40283 6.52548 6.56640 6.70478 6.99011 7.10056 7.67842 7.96009 8.39683 8.61364 9.51534 10.07536 10.43141 11.44383 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.005696 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.119181 B = 4914.932735 C = 6464.710295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 O -0.180 6.180 4 C -0.046 4.046 5 C -0.180 4.180 6 C -0.237 4.237 7 C 0.594 3.406 8 O -0.550 6.550 9 N -0.698 5.698 10 C 0.170 3.830 11 H 0.088 0.912 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.185 4.185 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.206 0.794 29 H 0.158 0.842 30 H 0.404 0.596 31 H 0.036 0.964 32 H 0.024 0.976 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 7.884 13.255 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.016 3.984 3 O -0.076 6.076 4 C -0.111 4.111 5 C -0.199 4.199 6 C -0.241 4.241 7 C 0.382 3.618 8 O -0.432 6.432 9 N -0.347 5.347 10 C 0.065 3.935 11 H 0.106 0.894 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.183 4.183 23 C -0.209 4.209 24 C -0.222 4.222 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.223 0.777 29 H 0.175 0.825 30 H 0.239 0.761 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.800 7.846 13.184 16.402 hybrid contribution 1.529 -0.299 -0.773 1.739 sum -4.271 7.546 12.411 15.140 Atomic orbital electron populations 1.20575 0.83923 1.05042 1.04017 1.22759 0.94025 0.83169 0.98409 1.83733 1.17192 1.35040 1.71680 1.23784 0.83423 0.96415 1.07518 1.22941 0.96946 0.94532 1.05482 1.21211 0.93267 0.94090 1.15547 1.17108 0.85527 0.83671 0.75466 1.90642 1.16700 1.84007 1.51815 1.45733 1.09862 1.05584 1.73522 1.20801 0.99601 0.79971 0.93121 0.89355 1.20920 0.93707 0.95373 0.88024 1.42353 1.45709 1.35817 1.13756 1.19208 1.11988 1.09078 0.97090 0.91140 1.24750 1.00160 0.98213 0.97679 1.69674 1.44497 1.25262 1.18389 0.86194 0.81333 0.78451 0.80205 1.21704 1.21810 1.20768 1.22651 0.93192 1.05212 0.97228 1.22894 0.98813 0.95786 1.03377 1.23265 1.03101 0.96532 0.99254 0.89687 0.90712 0.87174 0.77742 0.82471 0.76134 0.94662 0.95807 0.77960 0.93503 0.87971 0.88734 0.89283 0.90018 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.89 36.01 0.36 -0.56 16 2 C 0.07 0.98 7.37 -34.96 -0.26 0.72 16 3 O -0.18 -2.37 10.52 7.65 0.08 -2.29 16 4 C -0.05 -0.54 12.03 29.30 0.35 -0.18 16 5 C -0.18 -2.44 10.60 -37.45 -0.40 -2.84 16 6 C -0.24 -3.71 6.31 -103.28 -0.65 -4.36 16 7 C 0.59 10.28 7.15 -12.54 -0.09 10.19 16 8 O -0.55 -10.23 11.86 5.26 0.06 -10.17 16 9 N -0.70 -11.79 4.49 -54.90 -0.25 -12.04 16 10 C 0.17 2.93 2.43 -67.93 -0.17 2.77 16 11 H 0.09 1.72 7.34 -51.93 -0.38 1.34 16 12 C 0.15 2.92 5.80 -4.04 -0.02 2.90 16 13 N -0.73 -18.23 5.43 -59.91 -0.33 -18.56 16 14 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 18 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.16 -2.38 5.36 -90.62 -0.49 -2.86 16 23 C -0.17 -2.29 10.18 -26.69 -0.27 -2.56 16 24 C -0.18 -2.60 9.74 -26.69 -0.26 -2.86 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.11 1.46 6.49 -51.93 -0.34 1.12 16 28 H 0.21 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.16 1.93 7.74 -52.49 -0.41 1.52 16 30 H 0.40 6.62 7.77 -40.82 -0.32 6.30 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.39 10.35 7.33 -40.82 -0.30 10.05 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 36 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.12 1.90 5.01 -51.93 -0.26 1.64 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -31.93 329.48 -7.25 -39.18 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -5.35 Total: 15.95 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.14 Total: -6.92 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.15 Total: -57.94 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.14 Total: -12.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.93 -7.25 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276535205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.065 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds