Wall clock time and date at job start Tue Mar 31 2020 00:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33658 * 125.80005 * 2 1 4 4 C 1.34210 * 110.90678 * 179.97438 * 3 2 1 5 5 C 1.34180 * 109.12682 * 359.70424 * 4 3 2 6 6 C 1.36409 * 125.80135 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.19641 * 0.02562 * 6 2 1 8 8 O 1.21624 * 119.99500 * 359.97438 * 7 6 2 9 9 N 1.34773 * 120.00507 * 180.02562 * 7 6 2 10 10 C 1.46503 * 120.00358 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46913 * 34.99538 * 10 9 7 12 12 C 1.52997 * 109.47269 * 154.99590 * 10 9 7 13 13 N 1.46505 * 109.47212 * 304.99931 * 12 10 9 14 14 C 1.36936 * 119.99992 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00093 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00176 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00265 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46951 * 89.99797 * 18 16 14 20 20 H 1.48500 * 109.47313 * 210.00112 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00153 * 18 16 14 22 22 C 1.52997 * 109.46834 * 274.99972 * 10 9 7 23 23 C 1.53002 * 117.50022 * 128.74672 * 22 10 9 24 24 C 1.52997 * 117.50076 * 60.08477 * 22 10 9 25 25 H 1.08999 * 109.47032 * 270.00345 * 1 2 3 26 26 H 1.09000 * 109.46740 * 29.99963 * 1 2 3 27 27 H 1.09001 * 109.46955 * 149.99955 * 1 2 3 28 28 H 1.08000 * 125.43836 * 179.97438 * 4 3 2 29 29 H 1.07995 * 127.02803 * 180.26967 * 5 4 3 30 30 H 0.97007 * 119.99723 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 184.99923 * 12 10 9 32 32 H 1.09001 * 109.46832 * 65.00114 * 12 10 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 34 34 H 0.97001 * 120.00803 * 179.97438 * 17 16 14 35 35 H 1.09003 * 115.54905 * 274.41110 * 22 10 9 36 36 H 1.09000 * 117.49650 * 359.97438 * 23 22 10 37 37 H 1.09001 * 117.49817 * 145.01411 * 23 22 10 38 38 H 1.08996 * 117.49862 * 214.97497 * 24 22 10 39 39 H 1.08996 * 117.50355 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0841 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6850 -0.5990 0.0075 6 6 2.3050 -1.1063 0.0005 7 6 1.8741 -2.5157 0.0006 8 8 0.6890 -2.7891 0.0007 9 7 2.7931 -3.5015 0.0016 10 6 2.3647 -4.9025 0.0012 11 1 1.4540 -5.0037 -0.5892 12 6 3.4663 -5.7725 -0.6073 13 7 3.8092 -5.2661 -1.9386 14 6 4.7774 -5.8893 -2.6798 15 1 5.2880 -6.7545 -2.2830 16 6 5.1026 -5.4092 -3.9408 17 7 4.4808 -4.3547 -4.4241 18 14 6.4229 -6.2598 -4.9522 19 1 5.8011 -7.3183 -5.7879 20 1 7.0919 -5.2657 -5.8294 21 1 7.4253 -6.8718 -4.0434 22 6 2.0937 -5.3533 1.4379 23 6 0.7501 -6.0262 1.7257 24 6 1.0157 -4.6029 2.2224 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 4.4173 1.4285 0.0003 29 1 4.5928 -1.1839 0.0137 30 1 3.7383 -3.2833 0.0019 31 1 3.1137 -6.8006 -0.6894 32 1 4.3487 -5.7410 0.0319 33 1 3.3509 -4.4889 -2.2946 34 1 4.7083 -4.0188 -5.3052 35 1 2.9632 -5.7087 1.9910 36 1 0.0590 -6.1473 0.8915 37 1 0.7356 -6.8239 2.4683 38 1 1.1757 -4.4648 3.2917 39 1 0.4998 -3.7876 1.7153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276535205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:28 Heat of formation + Delta-G solvation = -8.851273 kcal Electronic energy + Delta-G solvation = -21783.944874 eV Core-core repulsion = 18500.516802 eV Total energy + Delta-G solvation = -3283.428073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.49792 -40.86786 -38.36915 -36.61996 -35.02545 -33.96407 -33.03957 -32.60350 -29.80851 -27.76178 -25.97839 -24.43399 -23.24738 -23.06388 -22.21628 -21.23543 -20.76785 -19.28756 -18.71736 -17.40539 -17.29357 -16.86565 -16.51387 -16.46241 -15.84936 -15.51801 -15.14765 -14.91190 -14.50822 -14.30457 -14.15898 -13.82838 -13.76395 -13.59448 -13.18496 -12.80690 -12.71490 -12.65243 -12.47345 -12.28504 -12.07647 -11.85013 -11.27560 -11.10249 -10.99324 -10.80677 -10.77228 -9.94191 -9.48801 -9.02407 -7.94231 -5.24600 0.37533 1.15058 1.48040 1.49777 1.58106 1.86364 2.25515 2.37630 2.55864 3.05008 3.39768 3.58132 3.65068 3.83732 3.92766 3.98955 4.13084 4.18042 4.31822 4.40219 4.46498 4.63790 4.64493 4.67024 4.77114 4.83167 4.87350 4.94125 5.05293 5.11661 5.23261 5.30278 5.37981 5.40874 5.49736 5.60808 6.05551 6.25558 6.62173 7.27923 7.32925 8.05663 8.30154 9.28665 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.005696 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.119181 B = 4914.932735 C = 6464.710295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 O -0.180 6.180 4 C -0.029 4.029 5 C -0.204 4.204 6 C -0.270 4.270 7 C 0.588 3.412 8 O -0.570 6.570 9 N -0.698 5.698 10 C 0.180 3.820 11 H 0.060 0.940 12 C 0.150 3.850 13 N -0.743 5.743 14 C -0.244 4.244 15 H 0.080 0.920 16 C -0.074 4.074 17 N -0.968 5.968 18 Si 0.974 3.026 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.266 1.266 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.182 4.182 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.250 0.750 29 H 0.164 0.836 30 H 0.405 0.595 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.373 0.627 34 H 0.250 0.750 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 7.981 14.602 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.013 3.987 3 O -0.076 6.076 4 C -0.094 4.094 5 C -0.223 4.223 6 C -0.275 4.275 7 C 0.378 3.622 8 O -0.453 6.453 9 N -0.346 5.346 10 C 0.075 3.925 11 H 0.078 0.922 12 C 0.023 3.977 13 N -0.386 5.386 14 C -0.376 4.376 15 H 0.098 0.902 16 C -0.266 4.266 17 N -0.619 5.619 18 Si 0.803 3.197 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.191 1.191 22 C -0.187 4.187 23 C -0.199 4.199 24 C -0.219 4.219 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.265 0.735 29 H 0.181 0.819 30 H 0.240 0.760 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.205 0.795 34 H 0.059 0.941 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.888 7.914 14.576 17.291 hybrid contribution 1.213 -0.314 -1.144 1.697 sum -3.674 7.601 13.432 15.865 Atomic orbital electron populations 1.20609 0.82551 1.05097 1.05073 1.23141 0.95033 0.83044 0.97445 1.83766 1.17841 1.34568 1.71394 1.24593 0.83612 0.96485 1.04687 1.23122 0.96344 0.95647 1.07162 1.21310 0.94967 0.93525 1.17684 1.17412 0.85285 0.84506 0.75016 1.90625 1.17430 1.84491 1.52784 1.45702 1.09913 1.05427 1.73589 1.20568 0.97304 0.80061 0.94522 0.92198 1.21045 0.94946 0.95688 0.86008 1.42521 1.45206 1.35398 1.15450 1.19636 1.11803 1.08856 0.97303 0.90246 1.25569 1.02740 0.99202 0.99090 1.69844 1.46441 1.27105 1.18513 0.85129 0.78915 0.77085 0.78526 1.21738 1.22354 1.19101 1.22563 0.94438 1.06222 0.95478 1.22982 0.97332 0.96159 1.03419 1.23203 1.02419 0.96263 0.99995 0.88057 0.88360 0.89283 0.73459 0.81854 0.75953 0.94363 0.94275 0.79465 0.94146 0.86245 0.89883 0.86578 0.87972 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.89 71.24 0.70 -1.05 16 2 C 0.07 1.86 7.37 25.26 0.19 2.04 16 3 O -0.18 -4.45 10.52 4.46 0.05 -4.40 16 4 C -0.03 -0.62 12.03 66.89 0.80 0.19 16 5 C -0.20 -5.42 10.60 23.65 0.25 -5.17 16 6 C -0.27 -8.58 6.31 -18.99 -0.12 -8.70 16 7 C 0.59 21.03 7.15 86.65 0.62 21.65 16 8 O -0.57 -22.12 11.86 -4.11 -0.05 -22.17 16 9 N -0.70 -24.10 4.49 -445.84 -2.00 -26.11 16 10 C 0.18 6.30 2.43 44.99 0.11 6.41 16 11 H 0.06 2.43 7.34 -2.39 -0.02 2.42 16 12 C 0.15 5.87 5.80 86.38 0.50 6.38 16 13 N -0.74 -37.40 5.43 -343.45 -1.87 -39.26 16 14 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 17 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 18 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.17 -4.70 5.36 -10.80 -0.06 -4.75 16 23 C -0.16 -4.09 10.18 30.62 0.31 -3.78 16 24 C -0.18 -4.93 9.74 30.62 0.30 -4.63 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 2.44 6.49 -2.39 -0.02 2.42 16 28 H 0.25 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.16 3.98 7.74 -2.91 -0.02 3.95 16 30 H 0.41 13.55 7.77 -92.70 -0.72 12.83 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.37 20.58 7.33 -92.71 -0.68 19.90 16 34 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.12 2.97 8.11 -2.39 -0.02 2.95 16 36 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 37 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.10 3.11 5.01 -2.39 -0.01 3.09 16 Total: -1.00 -69.26 329.48 3.03 -66.23 By element: Atomic # 1 Polarization: 45.19 SS G_CDS: -0.32 Total: 44.87 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 4.91 Total: -7.74 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -3.59 Total: -124.62 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: 0.00 Total: -26.57 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.26 3.03 -66.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276535205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.376 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds