Wall clock time and date at job start Tue Mar 31 2020 01:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40365 * 126.64348 * 2 1 4 4 C 1.35131 * 107.11270 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76820 * 359.75498 * 4 3 2 6 6 C 1.34915 * 109.38392 * 0.40675 * 5 4 3 7 7 C 1.46656 * 125.98765 * 179.85937 * 6 5 4 8 8 O 1.21698 * 119.99712 * 179.68722 * 7 6 5 9 9 N 1.34773 * 119.99889 * 359.69287 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47194 * 34.71875 * 10 9 7 12 12 C 1.52993 * 109.47100 * 154.71955 * 10 9 7 13 13 N 1.46498 * 109.47559 * 304.99754 * 12 10 9 14 14 C 1.36936 * 119.99972 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00354 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99896 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99923 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47279 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47480 * 120.00360 * 18 16 14 21 21 H 1.48501 * 109.46962 * 240.00263 * 18 16 14 22 22 C 1.52997 * 109.46691 * 274.72265 * 10 9 7 23 23 C 1.53000 * 117.49897 * 128.74883 * 22 10 9 24 24 C 1.53006 * 117.50330 * 60.08664 * 22 10 9 25 25 H 1.08996 * 109.47211 * 270.01950 * 1 2 3 26 26 H 1.08995 * 109.47264 * 30.02532 * 1 2 3 27 27 H 1.09002 * 109.46802 * 150.02550 * 1 2 3 28 28 H 1.07995 * 126.44261 * 359.97438 * 3 2 1 29 29 H 1.08001 * 125.61453 * 180.02562 * 4 3 2 30 30 H 0.97005 * 120.00161 * 359.71983 * 9 7 6 31 31 H 1.09002 * 109.47378 * 65.00377 * 12 10 9 32 32 H 1.09004 * 109.46895 * 184.99596 * 12 10 9 33 33 H 0.96997 * 120.00009 * 0.02562 * 13 12 10 34 34 H 0.96995 * 120.00110 * 180.02562 * 17 16 14 35 35 H 1.09000 * 115.55214 * 274.41010 * 22 10 9 36 36 H 1.09000 * 117.50268 * 359.97438 * 23 22 10 37 37 H 1.09007 * 117.50040 * 145.01782 * 23 22 10 38 38 H 1.08994 * 117.49645 * 214.98137 * 24 22 10 39 39 H 1.09001 * 117.49573 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0064 6 6 2.3220 -1.0956 0.0005 7 6 1.8843 -2.4953 0.0011 8 8 0.6968 -2.7614 0.0012 9 7 2.7972 -3.4868 0.0017 10 6 2.3599 -4.8851 0.0017 11 1 1.4456 -4.9799 -0.5840 12 6 3.4529 -5.7612 -0.6136 13 7 3.7919 -5.2553 -1.9460 14 6 4.7523 -5.8837 -2.6930 15 1 5.2595 -6.7525 -2.3001 16 6 5.0732 -5.4046 -3.9558 17 7 4.4547 -4.3461 -4.4348 18 14 6.3827 -6.2622 -4.9751 19 1 6.9222 -7.4188 -4.2159 20 1 5.7849 -6.7411 -6.2473 21 1 7.4816 -5.3087 -5.2726 22 6 2.0937 -5.3360 1.4393 23 6 0.7475 -6.0008 1.7333 24 6 1.0246 -4.5798 2.2305 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 2.0306 2.1595 -0.0004 29 1 4.5046 1.2917 0.0011 30 1 3.7437 -3.2746 -0.0024 31 1 4.3388 -5.7361 0.0209 32 1 3.0933 -6.7870 -0.6951 33 1 3.3367 -4.4748 -2.2988 34 1 4.6786 -4.0116 -5.3173 35 1 2.9638 -5.6976 1.9874 36 1 0.0512 -6.1166 0.9027 37 1 0.7318 -6.7994 2.4751 38 1 1.1912 -4.4441 3.2991 39 1 0.5111 -3.7607 1.7270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276544503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:55 Heat of formation + Delta-G solvation = 13.295147 kcal Electronic energy + Delta-G solvation = -21838.778020 eV Core-core repulsion = 18556.310288 eV Total energy + Delta-G solvation = -3282.467732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.59232 -39.62026 -37.16512 -35.04886 -34.12029 -33.28930 -31.23302 -30.27815 -28.34517 -27.12580 -24.10709 -22.95092 -22.10119 -21.54860 -21.24974 -20.02518 -19.77743 -18.01639 -17.09418 -16.30068 -16.15658 -15.82056 -15.07293 -14.96413 -14.36656 -14.06186 -13.49526 -13.43662 -13.15121 -13.00396 -12.94688 -12.84784 -12.47802 -12.09546 -11.78548 -11.63624 -11.23745 -11.03948 -10.90071 -10.82867 -10.17437 -10.14724 -9.94416 -9.76554 -9.66520 -9.64273 -8.92623 -8.77243 -8.42406 -6.96494 -5.77810 -3.08011 1.20528 2.39919 2.84780 3.39643 3.41738 3.43814 3.48043 3.50317 4.14653 4.55410 4.76381 4.83079 4.89012 5.02641 5.17112 5.28298 5.44054 5.49262 5.55175 5.57867 5.75559 5.76757 5.84106 5.85531 5.89798 6.08375 6.08535 6.19007 6.23081 6.35842 6.42567 6.49266 6.53859 6.66163 6.86483 6.98970 7.68523 7.82311 8.38872 8.40551 9.51360 10.06819 10.42109 11.44473 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.005749 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.511848 B = 4869.016383 C = 6388.513194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.096 4.096 3 C -0.228 4.228 4 C -0.006 4.006 5 O -0.158 6.158 6 C -0.074 4.074 7 C 0.606 3.394 8 O -0.526 6.526 9 N -0.695 5.695 10 C 0.168 3.832 11 H 0.091 0.909 12 C 0.148 3.852 13 N -0.732 5.732 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.207 0.793 30 H 0.409 0.591 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 8.262 13.328 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.247 4.247 4 C -0.077 4.077 5 O -0.053 6.053 6 C -0.126 4.126 7 C 0.392 3.608 8 O -0.406 6.406 9 N -0.343 5.343 10 C 0.064 3.936 11 H 0.109 0.891 12 C 0.020 3.980 13 N -0.377 5.377 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.184 4.184 23 C -0.207 4.207 24 C -0.222 4.222 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.170 0.830 29 H 0.224 0.776 30 H 0.244 0.756 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.565 7.697 13.265 16.315 hybrid contribution 1.189 0.214 -0.783 1.439 sum -4.377 7.911 12.482 15.412 Atomic orbital electron populations 1.20390 0.88391 1.03572 1.02501 1.20585 0.97557 0.90994 1.00718 1.21687 0.92504 0.99970 1.10580 1.24315 0.99851 0.80829 1.02667 1.84110 1.28416 1.22522 1.70238 1.21977 0.81414 0.95025 1.14192 1.16472 0.85856 0.81810 0.76634 1.90743 1.15807 1.82276 1.51782 1.45885 1.10136 1.05801 1.72514 1.20878 0.99778 0.79624 0.93337 0.89118 1.20925 0.93767 0.95320 0.88000 1.42358 1.46429 1.35363 1.13537 1.19255 1.12440 1.08780 0.96854 0.91030 1.24763 1.00196 0.98190 0.97695 1.69683 1.44630 1.25145 1.18349 0.86111 0.81148 0.78581 0.80283 1.20536 1.21863 1.21888 1.22652 0.93412 1.05305 0.97004 1.22903 0.98567 0.95836 1.03403 1.23255 1.03105 0.96505 0.99339 0.91157 0.91784 0.89355 0.82953 0.77601 0.75565 0.95674 0.94483 0.78010 0.93539 0.87785 0.88659 0.89165 0.89845 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.82 36.01 0.35 -0.81 16 2 C -0.10 -1.37 6.20 -104.43 -0.65 -2.02 16 3 C -0.23 -2.69 10.83 -39.89 -0.43 -3.12 16 4 C -0.01 -0.07 12.08 29.63 0.36 0.28 16 5 O -0.16 -2.39 10.40 4.98 0.05 -2.34 16 6 C -0.07 -1.20 7.13 -36.80 -0.26 -1.46 16 7 C 0.61 10.61 7.12 -12.87 -0.09 10.52 16 8 O -0.53 -9.77 11.79 5.19 0.06 -9.71 16 9 N -0.69 -11.93 4.49 -55.12 -0.25 -12.18 16 10 C 0.17 2.89 2.43 -67.93 -0.17 2.73 16 11 H 0.09 1.73 7.33 -51.93 -0.38 1.35 16 12 C 0.15 2.92 5.80 -4.05 -0.02 2.89 16 13 N -0.73 -18.34 5.43 -59.91 -0.33 -18.67 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.16 -2.36 5.36 -90.62 -0.49 -2.85 16 23 C -0.17 -2.22 10.18 -26.69 -0.27 -2.49 16 24 C -0.19 -2.57 9.74 -26.69 -0.26 -2.83 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.29 6.44 -51.93 -0.33 0.96 16 28 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.41 7.02 8.36 -40.82 -0.34 6.68 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.39 10.39 7.33 -40.82 -0.30 10.09 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 36 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 37 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.12 1.85 5.04 -51.93 -0.26 1.58 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -31.81 329.99 -7.35 -39.15 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -5.38 Total: 15.42 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.17 Total: -6.47 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.15 Total: -58.37 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.11 Total: -12.05 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.81 -7.35 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276544503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.446 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds