Wall clock time and date at job start Tue Mar 31 2020 01:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40365 * 126.64348 * 2 1 4 4 C 1.35131 * 107.11270 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76820 * 359.75498 * 4 3 2 6 6 C 1.34915 * 109.38392 * 0.40675 * 5 4 3 7 7 C 1.46656 * 125.98765 * 179.85937 * 6 5 4 8 8 O 1.21698 * 119.99712 * 179.68722 * 7 6 5 9 9 N 1.34773 * 119.99889 * 359.69287 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47194 * 34.71875 * 10 9 7 12 12 C 1.52993 * 109.47100 * 154.71955 * 10 9 7 13 13 N 1.46498 * 109.47559 * 304.99754 * 12 10 9 14 14 C 1.36936 * 119.99972 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00354 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99896 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99923 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47279 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47480 * 120.00360 * 18 16 14 21 21 H 1.48501 * 109.46962 * 240.00263 * 18 16 14 22 22 C 1.52997 * 109.46691 * 274.72265 * 10 9 7 23 23 C 1.53000 * 117.49897 * 128.74883 * 22 10 9 24 24 C 1.53006 * 117.50330 * 60.08664 * 22 10 9 25 25 H 1.08996 * 109.47211 * 270.01950 * 1 2 3 26 26 H 1.08995 * 109.47264 * 30.02532 * 1 2 3 27 27 H 1.09002 * 109.46802 * 150.02550 * 1 2 3 28 28 H 1.07995 * 126.44261 * 359.97438 * 3 2 1 29 29 H 1.08001 * 125.61453 * 180.02562 * 4 3 2 30 30 H 0.97005 * 120.00161 * 359.71983 * 9 7 6 31 31 H 1.09002 * 109.47378 * 65.00377 * 12 10 9 32 32 H 1.09004 * 109.46895 * 184.99596 * 12 10 9 33 33 H 0.96997 * 120.00009 * 0.02562 * 13 12 10 34 34 H 0.96995 * 120.00110 * 180.02562 * 17 16 14 35 35 H 1.09000 * 115.55214 * 274.41010 * 22 10 9 36 36 H 1.09000 * 117.50268 * 359.97438 * 23 22 10 37 37 H 1.09007 * 117.50040 * 145.01782 * 23 22 10 38 38 H 1.08994 * 117.49645 * 214.98137 * 24 22 10 39 39 H 1.09001 * 117.49573 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0064 6 6 2.3220 -1.0956 0.0005 7 6 1.8843 -2.4953 0.0011 8 8 0.6968 -2.7614 0.0012 9 7 2.7972 -3.4868 0.0017 10 6 2.3599 -4.8851 0.0017 11 1 1.4456 -4.9799 -0.5840 12 6 3.4529 -5.7612 -0.6136 13 7 3.7919 -5.2553 -1.9460 14 6 4.7523 -5.8837 -2.6930 15 1 5.2595 -6.7525 -2.3001 16 6 5.0732 -5.4046 -3.9558 17 7 4.4547 -4.3461 -4.4348 18 14 6.3827 -6.2622 -4.9751 19 1 6.9222 -7.4188 -4.2159 20 1 5.7849 -6.7411 -6.2473 21 1 7.4816 -5.3087 -5.2726 22 6 2.0937 -5.3360 1.4393 23 6 0.7475 -6.0008 1.7333 24 6 1.0246 -4.5798 2.2305 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 2.0306 2.1595 -0.0004 29 1 4.5046 1.2917 0.0011 30 1 3.7437 -3.2746 -0.0024 31 1 4.3388 -5.7361 0.0209 32 1 3.0933 -6.7870 -0.6951 33 1 3.3367 -4.4748 -2.2988 34 1 4.6786 -4.0116 -5.3173 35 1 2.9638 -5.6976 1.9874 36 1 0.0512 -6.1166 0.9027 37 1 0.7318 -6.7994 2.4751 38 1 1.1912 -4.4441 3.2991 39 1 0.5111 -3.7607 1.7270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276544503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:54 Heat of formation + Delta-G solvation = -7.653088 kcal Electronic energy + Delta-G solvation = -21839.686404 eV Core-core repulsion = 18556.310288 eV Total energy + Delta-G solvation = -3283.376115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.64187 -40.94281 -38.45478 -36.64543 -35.36640 -34.75026 -33.07444 -31.40866 -29.85327 -28.35002 -25.97945 -24.19111 -23.21674 -23.07867 -22.31712 -21.32739 -20.96834 -19.42763 -18.88252 -17.52296 -17.38034 -16.95061 -16.63290 -16.41494 -15.84428 -15.42988 -15.13930 -14.86048 -14.61739 -14.38220 -14.02583 -13.86576 -13.70001 -13.49356 -13.21091 -12.83675 -12.81075 -12.68648 -12.50095 -12.28192 -12.04887 -11.86157 -11.35816 -11.15307 -11.01683 -10.91322 -10.64041 -10.09532 -9.53008 -9.03864 -7.95435 -5.25902 0.07371 1.43745 1.47536 1.48489 1.58664 1.76030 2.13205 2.22499 2.55080 3.02009 3.38846 3.55313 3.76480 3.84833 3.92147 3.98724 4.10678 4.16357 4.31369 4.43194 4.55706 4.61554 4.64056 4.78081 4.80249 4.82115 4.86687 5.03765 5.07788 5.12718 5.20828 5.29159 5.33057 5.46817 5.49617 5.54388 5.91976 6.24577 6.49125 7.07022 7.31631 8.03990 8.28149 9.27903 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.005749 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.511848 B = 4869.016383 C = 6388.513194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.096 4.096 3 C -0.232 4.232 4 C 0.005 3.995 5 O -0.178 6.178 6 C -0.119 4.119 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.696 5.696 10 C 0.179 3.821 11 H 0.065 0.935 12 C 0.150 3.850 13 N -0.744 5.744 14 C -0.244 4.244 15 H 0.081 0.919 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.976 3.024 19 H -0.263 1.263 20 H -0.296 1.296 21 H -0.293 1.293 22 C -0.169 4.169 23 C -0.159 4.159 24 C -0.183 4.183 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.187 0.813 29 H 0.252 0.748 30 H 0.407 0.593 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.373 0.627 34 H 0.250 0.750 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 8.725 14.658 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.251 4.251 4 C -0.064 4.064 5 O -0.074 6.074 6 C -0.171 4.171 7 C 0.389 3.611 8 O -0.429 6.429 9 N -0.344 5.344 10 C 0.074 3.926 11 H 0.083 0.917 12 C 0.023 3.977 13 N -0.387 5.387 14 C -0.375 4.375 15 H 0.099 0.901 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.224 1.224 21 H -0.220 1.220 22 C -0.188 4.188 23 C -0.196 4.196 24 C -0.220 4.220 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.204 0.796 29 H 0.267 0.733 30 H 0.243 0.757 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.204 0.796 34 H 0.059 0.941 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.711 8.127 14.641 17.395 hybrid contribution 0.896 0.151 -1.143 1.460 sum -3.814 8.277 13.498 16.287 Atomic orbital electron populations 1.20407 0.87651 1.03446 1.03190 1.21029 0.98404 0.91516 0.98994 1.22086 0.91993 1.00772 1.10250 1.25330 1.01657 0.79702 0.99751 1.84088 1.27983 1.24429 1.70856 1.21831 0.82463 0.94748 1.18018 1.16719 0.85641 0.82615 0.76155 1.90719 1.16443 1.82885 1.52807 1.45864 1.10004 1.05800 1.72770 1.20658 0.97532 0.79573 0.94820 0.91727 1.21057 0.94991 0.95756 0.85898 1.42538 1.45938 1.34935 1.15289 1.19687 1.12204 1.08561 0.97066 0.90119 1.25602 1.02790 0.99219 0.99161 1.69854 1.46633 1.27027 1.18507 0.85038 0.78320 0.77831 0.78322 1.18759 1.22354 1.22044 1.22564 0.94690 1.06356 0.95217 1.22996 0.97013 0.96146 1.03445 1.23199 1.02459 0.96283 1.00059 0.89997 0.89332 0.91944 0.79610 0.73260 0.75748 0.94280 0.93984 0.79553 0.94134 0.86105 0.89716 0.86424 0.87819 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.82 71.24 0.70 -1.56 16 2 C -0.10 -2.72 6.20 -19.74 -0.12 -2.84 16 3 C -0.23 -4.93 10.83 22.07 0.24 -4.69 16 4 C 0.00 0.10 12.08 67.10 0.81 0.91 16 5 O -0.18 -5.35 10.40 -5.10 -0.05 -5.40 16 6 C -0.12 -3.96 7.13 24.07 0.17 -3.79 16 7 C 0.60 22.04 7.12 86.44 0.62 22.65 16 8 O -0.55 -21.47 11.79 -4.34 -0.05 -21.52 16 9 N -0.70 -24.81 4.49 -446.53 -2.01 -26.82 16 10 C 0.18 6.27 2.43 44.99 0.11 6.38 16 11 H 0.06 2.60 7.33 -2.39 -0.02 2.58 16 12 C 0.15 5.91 5.80 86.38 0.50 6.41 16 13 N -0.74 -37.91 5.43 -343.45 -1.87 -39.77 16 14 C -0.24 -13.52 9.99 84.04 0.84 -12.68 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 17 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 18 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 C -0.17 -4.72 5.36 -10.79 -0.06 -4.78 16 23 C -0.16 -3.96 10.18 30.62 0.31 -3.65 16 24 C -0.18 -4.94 9.74 30.62 0.30 -4.64 16 25 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.90 6.44 -2.39 -0.02 1.88 16 28 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.25 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.41 14.51 8.36 -92.70 -0.77 13.74 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.37 20.80 7.33 -92.71 -0.68 20.12 16 34 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.12 3.00 8.11 -2.39 -0.02 2.98 16 36 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 37 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.09 3.03 5.04 -2.39 -0.01 3.02 16 Total: -1.00 -70.21 329.99 2.84 -67.37 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -0.37 Total: 43.99 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.88 Total: -6.15 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -3.59 Total: -126.51 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.10 Total: -26.92 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -70.21 2.84 -67.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276544503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.714 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds