Wall clock time and date at job start Tue Mar 31 2020 00:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34178 * 125.43834 * 2 1 4 4 C 1.47026 * 105.95487 * 180.02562 * 3 2 1 5 5 C 1.47380 * 127.18974 * 180.02562 * 4 3 2 6 6 O 1.21609 * 120.00425 * 5.15501 * 5 4 3 7 7 N 1.34775 * 119.99623 * 185.15914 * 5 4 3 8 8 C 1.46502 * 120.00027 * 184.93780 * 7 5 4 9 9 C 1.52996 * 109.47278 * 184.76893 * 8 7 5 10 10 N 1.46496 * 112.90951 * 65.85034 * 9 8 7 11 11 C 1.36946 * 119.99844 * 46.23976 * 10 9 8 12 12 H 1.07995 * 119.99875 * 5.62087 * 11 10 9 13 13 C 1.38807 * 119.99635 * 185.62171 * 11 10 9 14 14 N 1.31620 * 120.00503 * 354.90056 * 13 11 10 15 15 Si 1.86802 * 119.99782 * 174.89789 * 13 11 10 16 16 H 1.48503 * 109.47164 * 5.00418 * 15 13 11 17 17 H 1.48498 * 109.46997 * 125.00160 * 15 13 11 18 18 H 1.48502 * 109.47338 * 245.00117 * 15 13 11 19 19 C 1.53775 * 113.61456 * 294.59854 * 9 8 7 20 20 C 1.53785 * 87.08368 * 220.01840 * 19 9 8 21 21 C 1.53780 * 113.61397 * 197.10208 * 9 8 7 22 22 C 1.36417 * 105.61504 * 0.26425 * 4 3 2 23 23 O 1.33654 * 108.39491 * 359.57377 * 22 4 3 24 24 H 1.09000 * 109.47575 * 89.99722 * 1 2 3 25 25 H 1.08999 * 109.47026 * 209.99590 * 1 2 3 26 26 H 1.08997 * 109.46902 * 329.99425 * 1 2 3 27 27 H 1.07996 * 127.02119 * 0.02672 * 3 2 1 28 28 H 0.96997 * 120.00568 * 4.93183 * 7 5 4 29 29 H 1.08998 * 109.47400 * 64.76436 * 8 7 5 30 30 H 1.09007 * 109.46973 * 304.76839 * 8 7 5 31 31 H 0.97002 * 120.00334 * 226.23919 * 10 9 8 32 32 H 0.97000 * 120.00409 * 179.97438 * 14 13 11 33 33 H 1.08996 * 113.61759 * 105.47176 * 19 9 8 34 34 H 1.09005 * 113.61786 * 334.56704 * 19 9 8 35 35 H 1.09003 * 113.61204 * 139.97689 * 20 19 9 36 36 H 1.08990 * 113.61670 * 270.88657 * 20 19 9 37 37 H 1.09004 * 113.61768 * 25.43030 * 21 9 8 38 38 H 1.09005 * 113.69112 * 254.54478 * 21 9 8 39 39 H 1.07990 * 125.79724 * 179.73731 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4125 -0.0003 6 8 4.8343 2.6230 0.0951 7 7 6.1041 0.8115 -0.1060 8 6 7.3316 1.6038 0.0028 9 6 8.5422 0.7088 -0.2695 10 7 8.5883 0.2159 -1.6483 11 6 8.3724 1.0771 -2.6909 12 1 8.2584 2.1345 -2.5031 13 6 8.3000 0.5909 -3.9890 14 7 8.5382 -0.6809 -4.2298 15 14 7.8644 1.7418 -5.3945 16 1 7.7636 3.1322 -4.8826 17 1 8.9207 1.6732 -6.4359 18 1 6.5627 1.3351 -5.9821 19 6 8.7443 -0.3918 0.7852 20 6 10.2520 -0.1085 0.6779 21 6 9.8728 1.3082 0.2152 22 6 3.5790 -0.7582 -0.0070 23 8 2.2852 -1.0935 -0.0006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9595 2.1230 0.0004 28 1 6.1564 -0.1457 -0.2540 29 1 7.4068 2.0212 1.0069 30 1 7.3071 2.4137 -0.7263 31 1 8.7717 -0.7205 -1.8228 32 1 8.4872 -1.0208 -5.1368 33 1 8.4611 -1.3857 0.4389 34 1 8.3220 -0.1458 1.7596 35 1 10.7697 -0.1307 1.6368 36 1 10.7537 -0.6986 -0.0889 37 1 9.7592 2.0191 1.0336 38 1 10.5017 1.6874 -0.5904 39 1 4.4103 -1.4475 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280475038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:55 Heat of formation + Delta-G solvation = -15.827581 kcal Electronic energy + Delta-G solvation = -21669.726072 eV Core-core repulsion = 18385.995484 eV Total energy + Delta-G solvation = -3283.730588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -43.54193 -40.85782 -39.69349 -35.44026 -35.20999 -34.06473 -32.96528 -31.91354 -28.98439 -27.36551 -26.62808 -25.91891 -24.57986 -22.87324 -22.09268 -20.76614 -19.68435 -19.23742 -18.67142 -17.31443 -17.27776 -17.01523 -16.56032 -16.11192 -15.90124 -15.60438 -15.26173 -14.93172 -14.43201 -14.22087 -14.00104 -13.78566 -13.77758 -13.64134 -13.13534 -13.03350 -12.96037 -12.74043 -12.64246 -12.19436 -12.01011 -11.51434 -11.44413 -11.19913 -10.89181 -10.84601 -10.77881 -9.99952 -9.53551 -8.99412 -7.97303 -5.22413 0.35277 1.03368 1.39522 1.43208 1.50297 1.87509 2.21107 2.39272 2.51798 3.35202 3.63152 3.67205 3.73758 3.81219 3.98868 4.02002 4.09118 4.26318 4.40296 4.52779 4.66643 4.73947 4.76824 4.82778 4.88257 4.88901 4.93385 4.99768 5.10472 5.14863 5.31519 5.40347 5.42613 5.48875 5.62546 5.70477 5.99899 6.27904 6.60735 7.23983 7.35158 8.08220 8.32568 9.25323 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.005603 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.273361 B = 4995.730493 C = 6119.783350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.009 4.009 3 C -0.195 4.195 4 C -0.262 4.262 5 C 0.578 3.422 6 O -0.594 6.594 7 N -0.692 5.692 8 C 0.134 3.866 9 C 0.159 3.841 10 N -0.703 5.703 11 C -0.219 4.219 12 H 0.062 0.938 13 C -0.060 4.060 14 N -0.959 5.959 15 Si 0.948 3.052 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.296 1.296 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.040 3.960 23 O -0.175 6.175 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.154 0.846 28 H 0.408 0.592 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.379 0.621 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -3.429 13.417 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 C -0.214 4.214 4 C -0.266 4.266 5 C 0.367 3.633 6 O -0.477 6.477 7 N -0.340 5.340 8 C 0.008 3.992 9 C 0.068 3.932 10 N -0.343 5.343 11 C -0.351 4.351 12 H 0.080 0.920 13 C -0.253 4.253 14 N -0.609 5.609 15 Si 0.779 3.221 16 H -0.204 1.204 17 H -0.219 1.219 18 H -0.224 1.224 19 C -0.167 4.167 20 C -0.159 4.159 21 C -0.199 4.199 22 C -0.031 4.031 23 O -0.070 6.070 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.123 0.877 27 H 0.172 0.828 28 H 0.243 0.757 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.213 0.787 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.770 -2.716 13.388 17.396 hybrid contribution 0.402 0.391 -1.584 1.680 sum -10.368 -2.325 11.804 15.882 Atomic orbital electron populations 1.20534 0.81545 1.05712 1.04931 1.22979 0.95695 0.82691 1.04366 1.22628 0.90126 1.00430 1.08255 1.21558 0.94349 0.94559 1.16163 1.17675 0.83307 0.86683 0.75650 1.90700 1.87842 1.15819 1.53336 1.45505 1.04664 1.12282 1.71596 1.21576 0.83599 0.94186 0.99809 1.21129 0.91849 0.94916 0.85328 1.42119 1.84210 1.08697 0.99227 1.19282 1.38541 0.90495 0.86823 0.92025 1.25210 1.03898 0.97067 0.99162 1.69758 1.57621 1.13775 1.19775 0.85449 0.77074 0.78855 0.80701 1.20412 1.21875 1.22395 1.23206 0.96773 0.98125 0.98628 1.22573 0.96192 0.95991 1.01161 1.23532 0.98335 0.97699 1.00304 1.24923 0.84854 0.94914 0.98369 1.83754 1.16534 1.35735 1.71011 0.88785 0.88760 0.87658 0.82783 0.75664 0.90694 0.94810 0.78703 0.94095 0.91128 0.87532 0.89553 0.91939 0.88912 0.93787 0.74167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.40 71.23 0.74 -0.15 16 2 C -0.01 -0.20 7.28 24.76 0.18 -0.02 16 3 C -0.19 -5.55 10.90 23.65 0.26 -5.29 16 4 C -0.26 -8.28 6.31 -18.99 -0.12 -8.40 16 5 C 0.58 22.01 7.81 86.65 0.68 22.68 16 6 O -0.59 -27.25 16.97 -4.06 -0.07 -27.32 16 7 N -0.69 -24.00 5.43 -466.42 -2.53 -26.54 16 8 C 0.13 4.92 4.80 86.38 0.41 5.33 16 9 C 0.16 5.64 0.90 4.13 0.00 5.64 16 10 N -0.70 -32.11 5.27 -300.99 -1.59 -33.70 16 11 C -0.22 -11.74 9.32 84.03 0.78 -10.96 16 12 H 0.06 3.40 6.80 -2.91 -0.02 3.38 16 13 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 14 N -0.96 -56.24 13.07 21.65 0.28 -55.95 16 15 Si 0.95 47.11 29.56 68.60 2.03 49.14 16 16 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 18 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 19 C -0.13 -3.45 7.04 31.12 0.22 -3.23 16 20 C -0.12 -3.34 7.99 31.12 0.25 -3.10 16 21 C -0.16 -5.08 7.43 31.12 0.23 -4.85 16 22 C 0.04 0.97 11.61 67.39 0.78 1.75 16 23 O -0.17 -4.15 10.52 4.43 0.05 -4.10 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.41 12.48 7.33 -92.71 -0.68 11.80 16 29 H 0.07 2.45 8.06 -2.39 -0.02 2.44 16 30 H 0.03 1.51 6.81 -2.38 -0.02 1.49 16 31 H 0.38 18.45 7.85 -92.71 -0.73 17.72 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 34 H 0.11 2.31 8.10 -2.38 -0.02 2.29 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 38 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.24 4.09 7.52 -2.92 -0.02 4.06 16 Total: -1.00 -71.80 333.30 2.72 -69.07 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.33 Total: 32.91 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 4.89 Total: -3.52 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -3.84 Total: -116.19 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.02 Total: -31.42 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -71.80 2.72 -69.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280475038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.246 kcal (2) G-P(sol) polarization free energy of solvation -71.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds