Wall clock time and date at job start Tue Mar 31 2020 01:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40370 * 126.64548 * 2 1 4 4 C 1.35129 * 107.11472 * 180.22086 * 3 2 1 5 5 O 1.33931 * 108.76857 * 359.78420 * 4 3 2 6 6 C 1.34915 * 109.38354 * 359.97438 * 5 4 3 7 7 C 1.46653 * 125.98516 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99838 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00392 * 0.02562 * 7 6 5 10 10 C 1.47023 * 125.64529 * 0.02885 * 9 7 6 11 11 C 1.54325 * 107.26905 * 178.91171 * 10 9 7 12 12 C 1.55156 * 102.94386 * 337.81039 * 11 10 9 13 13 H 1.08999 * 111.00396 * 277.38541 * 12 11 10 14 14 C 1.53006 * 111.00251 * 153.57231 * 12 11 10 15 15 N 1.46500 * 109.46998 * 174.99795 * 14 12 11 16 16 C 1.36931 * 120.00396 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00545 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99833 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47110 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47258 * 119.99748 * 20 18 16 23 23 H 1.48508 * 109.46891 * 239.99707 * 20 18 16 24 24 C 1.47427 * 125.65103 * 179.97438 * 9 7 6 25 25 H 1.09001 * 109.46943 * 270.15278 * 1 2 3 26 26 H 1.09000 * 109.47050 * 30.15587 * 1 2 3 27 27 H 1.08998 * 109.46884 * 150.15301 * 1 2 3 28 28 H 1.08003 * 126.44000 * 359.97438 * 3 2 1 29 29 H 1.08002 * 125.61541 * 179.78038 * 4 3 2 30 30 H 1.09005 * 109.88477 * 59.50139 * 10 9 7 31 31 H 1.08994 * 109.88081 * 298.33332 * 10 9 7 32 32 H 1.08997 * 110.72574 * 219.44207 * 11 10 9 33 33 H 1.09008 * 110.86595 * 96.24179 * 11 10 9 34 34 H 1.08993 * 109.46955 * 295.00020 * 14 12 11 35 35 H 1.09000 * 109.47050 * 54.99849 * 14 12 11 36 36 H 0.97010 * 119.99909 * 359.97438 * 15 14 12 37 37 H 0.97001 * 119.99731 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.36013 * 85.31361 * 24 9 7 39 39 H 1.08997 * 110.36806 * 322.99319 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0050 5 8 3.6005 -0.6647 -0.0032 6 6 2.3220 -1.0955 0.0034 7 6 1.8844 -2.4952 0.0068 8 8 0.6968 -2.7614 0.0124 9 7 2.7972 -3.4867 0.0036 10 6 4.2565 -3.3079 -0.0026 11 6 4.8906 -4.7146 0.0236 12 6 3.7579 -5.5954 0.6141 13 1 3.7448 -5.5372 1.7024 14 6 3.8915 -7.0463 0.1470 15 7 2.8810 -7.8696 0.8157 16 6 2.8079 -9.2116 0.5533 17 1 3.4951 -9.6630 -0.1470 18 6 1.8502 -9.9915 1.1865 19 7 1.0124 -9.4413 2.0396 20 14 1.7502 -11.8221 0.8280 21 1 2.7955 -12.1908 -0.1601 22 1 1.9645 -12.5849 2.0839 23 1 0.4105 -12.1456 0.2748 24 6 2.4978 -4.9303 0.0068 25 1 -0.3633 0.0027 1.0277 26 1 -0.3633 0.8886 -0.5163 27 1 -0.3633 -0.8914 -0.5115 28 1 2.0306 2.1596 -0.0004 29 1 4.5046 1.2917 -0.0097 30 1 4.5649 -2.7459 0.8790 31 1 4.5615 -2.7805 -0.9064 32 1 5.7680 -4.7302 0.6701 33 1 5.1492 -5.0428 -0.9832 34 1 3.7445 -7.0956 -0.9319 35 1 4.8856 -7.4180 0.3955 36 1 2.2640 -7.4642 1.4450 37 1 0.3433 -9.9865 2.4824 38 1 2.3341 -5.2859 -1.0104 39 1 1.6248 -5.1353 0.6264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317313390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:31 Heat of formation + Delta-G solvation = -8.696848 kcal Electronic energy + Delta-G solvation = -21354.319725 eV Core-core repulsion = 18070.898349 eV Total energy + Delta-G solvation = -3283.421376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.87626 -39.78140 -37.65250 -34.76994 -34.17921 -32.32218 -30.73350 -30.30448 -28.75139 -27.76652 -25.47951 -23.79766 -22.41102 -21.86692 -21.26216 -20.01844 -19.41007 -17.75444 -16.98189 -16.65464 -16.32025 -15.99866 -15.30225 -14.63780 -14.45080 -13.86455 -13.61216 -13.42691 -13.22729 -13.21891 -13.14648 -12.78995 -12.64661 -12.54782 -12.12103 -11.92105 -11.74287 -11.27269 -10.86703 -10.63529 -10.61079 -10.41753 -10.09110 -9.97202 -9.89361 -9.67462 -8.89961 -8.87106 -8.49810 -6.91597 -5.74517 -3.03987 0.93732 2.14353 2.52877 3.07893 3.14628 3.45202 3.50415 3.53012 4.34803 4.57603 4.58477 4.63787 4.69478 4.90274 5.01399 5.27370 5.33420 5.34941 5.44958 5.58837 5.61186 5.61837 5.67583 5.85163 5.88613 5.96573 5.98805 6.02990 6.09130 6.20345 6.28720 6.37779 6.40343 6.68845 6.73822 6.82440 7.48302 7.71782 8.06422 8.43646 9.54998 10.11825 10.46174 11.48224 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.003444 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.593850 B = 8127.158715 C = 8817.823168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.092 4.092 3 C -0.225 4.225 4 C -0.012 4.012 5 O -0.160 6.160 6 C -0.075 4.075 7 C 0.611 3.389 8 O -0.517 6.517 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.125 4.125 12 C -0.106 4.106 13 H 0.086 0.914 14 C 0.165 3.835 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.116 3.884 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.571 22.565 -4.621 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.244 4.244 4 C -0.082 4.082 5 O -0.055 6.055 6 C -0.127 4.127 7 C 0.399 3.601 8 O -0.395 6.395 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.125 4.125 13 H 0.105 0.895 14 C 0.037 3.963 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.005 4.005 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.225 0.775 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.165 22.082 -4.700 23.687 hybrid contribution -0.205 -0.524 0.092 0.570 sum 6.960 21.558 -4.608 23.118 Atomic orbital electron populations 1.20428 0.88198 1.03574 1.02970 1.20646 0.97724 0.90948 1.00176 1.21728 0.92482 1.00059 1.10097 1.24345 0.99882 0.80949 1.03018 1.84156 1.28389 1.22351 1.70588 1.21896 0.81385 0.94718 1.14652 1.16150 0.84976 0.81275 0.77668 1.90879 1.15186 1.82021 1.51400 1.48453 1.06820 1.07201 1.71718 1.22084 0.79577 0.98337 1.01871 1.22666 0.98291 0.92921 1.02455 1.22602 0.93081 0.95950 1.00874 0.89543 1.20588 0.93347 0.86869 0.95480 1.42386 1.37858 1.05758 1.51790 1.19252 1.13070 0.84460 1.20421 0.91100 1.24756 0.98480 0.98168 0.99558 1.69674 1.21825 1.34783 1.31700 0.86118 0.77314 0.85418 0.77330 1.20563 1.21887 1.21853 1.22415 0.99302 0.76829 1.01966 0.90769 0.91582 0.89392 0.82808 0.77501 0.91229 0.91310 0.89859 0.90222 0.95960 0.95720 0.78196 0.93520 0.90728 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.81 36.01 0.35 -0.72 16 2 C -0.09 -1.12 6.20 -104.43 -0.65 -1.77 16 3 C -0.22 -2.04 10.83 -39.89 -0.43 -2.47 16 4 C -0.01 -0.10 12.08 29.63 0.36 0.26 16 5 O -0.16 -1.79 8.28 4.99 0.04 -1.75 16 6 C -0.07 -1.02 6.95 -36.80 -0.26 -1.28 16 7 C 0.61 9.97 7.82 -12.87 -0.10 9.87 16 8 O -0.52 -9.88 14.99 5.19 0.08 -9.81 16 9 N -0.61 -9.26 3.33 -172.08 -0.57 -9.83 16 10 C 0.10 1.23 5.54 -3.06 -0.02 1.22 16 11 C -0.12 -1.47 6.42 -24.90 -0.16 -1.63 16 12 C -0.11 -1.66 3.05 -88.48 -0.27 -1.93 16 13 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.17 3.20 5.72 -4.04 -0.02 3.18 16 15 N -0.73 -18.51 5.55 -59.91 -0.33 -18.84 16 16 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C 0.12 1.96 6.32 -2.54 -0.02 1.94 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.17 6.45 -51.93 -0.33 0.84 16 28 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 30 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.88 8.04 -51.92 -0.42 0.46 16 34 H 0.02 0.44 7.96 -51.93 -0.41 0.02 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.38 10.28 7.67 -40.82 -0.31 9.96 16 37 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 1.29 7.91 -51.93 -0.41 0.87 16 39 H 0.09 1.67 8.04 -51.93 -0.42 1.26 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -33.43 326.80 -7.23 -40.66 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.62 Total: 5.61 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.46 Total: -0.72 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.18 Total: -56.48 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.12 Total: -11.56 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.43 -7.23 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317313390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.965 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds