Wall clock time and date at job start Tue Mar 31 2020 01:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40370 * 126.64548 * 2 1 4 4 C 1.35129 * 107.11472 * 180.22086 * 3 2 1 5 5 O 1.33931 * 108.76857 * 359.78420 * 4 3 2 6 6 C 1.34915 * 109.38354 * 359.97438 * 5 4 3 7 7 C 1.46653 * 125.98516 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99838 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00392 * 0.02562 * 7 6 5 10 10 C 1.47023 * 125.64529 * 0.02885 * 9 7 6 11 11 C 1.54325 * 107.26905 * 178.91171 * 10 9 7 12 12 C 1.55156 * 102.94386 * 337.81039 * 11 10 9 13 13 H 1.08999 * 111.00396 * 277.38541 * 12 11 10 14 14 C 1.53006 * 111.00251 * 153.57231 * 12 11 10 15 15 N 1.46500 * 109.46998 * 174.99795 * 14 12 11 16 16 C 1.36931 * 120.00396 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00545 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99833 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47110 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47258 * 119.99748 * 20 18 16 23 23 H 1.48508 * 109.46891 * 239.99707 * 20 18 16 24 24 C 1.47427 * 125.65103 * 179.97438 * 9 7 6 25 25 H 1.09001 * 109.46943 * 270.15278 * 1 2 3 26 26 H 1.09000 * 109.47050 * 30.15587 * 1 2 3 27 27 H 1.08998 * 109.46884 * 150.15301 * 1 2 3 28 28 H 1.08003 * 126.44000 * 359.97438 * 3 2 1 29 29 H 1.08002 * 125.61541 * 179.78038 * 4 3 2 30 30 H 1.09005 * 109.88477 * 59.50139 * 10 9 7 31 31 H 1.08994 * 109.88081 * 298.33332 * 10 9 7 32 32 H 1.08997 * 110.72574 * 219.44207 * 11 10 9 33 33 H 1.09008 * 110.86595 * 96.24179 * 11 10 9 34 34 H 1.08993 * 109.46955 * 295.00020 * 14 12 11 35 35 H 1.09000 * 109.47050 * 54.99849 * 14 12 11 36 36 H 0.97010 * 119.99909 * 359.97438 * 15 14 12 37 37 H 0.97001 * 119.99731 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.36013 * 85.31361 * 24 9 7 39 39 H 1.08997 * 110.36806 * 322.99319 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0050 5 8 3.6005 -0.6647 -0.0032 6 6 2.3220 -1.0955 0.0034 7 6 1.8844 -2.4952 0.0068 8 8 0.6968 -2.7614 0.0124 9 7 2.7972 -3.4867 0.0036 10 6 4.2565 -3.3079 -0.0026 11 6 4.8906 -4.7146 0.0236 12 6 3.7579 -5.5954 0.6141 13 1 3.7448 -5.5372 1.7024 14 6 3.8915 -7.0463 0.1470 15 7 2.8810 -7.8696 0.8157 16 6 2.8079 -9.2116 0.5533 17 1 3.4951 -9.6630 -0.1470 18 6 1.8502 -9.9915 1.1865 19 7 1.0124 -9.4413 2.0396 20 14 1.7502 -11.8221 0.8280 21 1 2.7955 -12.1908 -0.1601 22 1 1.9645 -12.5849 2.0839 23 1 0.4105 -12.1456 0.2748 24 6 2.4978 -4.9303 0.0068 25 1 -0.3633 0.0027 1.0277 26 1 -0.3633 0.8886 -0.5163 27 1 -0.3633 -0.8914 -0.5115 28 1 2.0306 2.1596 -0.0004 29 1 4.5046 1.2917 -0.0097 30 1 4.5649 -2.7459 0.8790 31 1 4.5615 -2.7805 -0.9064 32 1 5.7680 -4.7302 0.6701 33 1 5.1492 -5.0428 -0.9832 34 1 3.7445 -7.0956 -0.9319 35 1 4.8856 -7.4180 0.3955 36 1 2.2640 -7.4642 1.4450 37 1 0.3433 -9.9865 2.4824 38 1 2.3341 -5.2859 -1.0104 39 1 1.6248 -5.1353 0.6264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317313390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:30 Heat of formation + Delta-G solvation = -31.366095 kcal Electronic energy + Delta-G solvation = -21355.302737 eV Core-core repulsion = 18070.898349 eV Total energy + Delta-G solvation = -3284.404389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.68474 -40.98560 -38.93309 -36.50147 -35.10293 -33.98072 -32.22475 -31.29782 -30.05210 -28.82290 -27.04440 -25.32404 -23.75722 -22.95279 -22.16713 -21.35801 -20.40510 -19.22784 -18.57068 -17.68722 -17.31434 -17.12689 -16.58809 -16.29164 -15.71119 -15.32439 -15.11861 -14.71451 -14.63752 -14.15330 -14.07837 -13.96574 -13.84413 -13.57573 -13.45958 -13.11404 -12.98050 -12.79423 -12.78225 -12.21765 -12.12704 -11.89375 -11.65178 -11.62147 -11.28432 -10.95322 -10.67576 -9.95515 -9.50458 -9.00363 -7.94819 -5.24303 0.00691 1.41179 1.47306 1.48703 1.56952 1.58737 2.02306 2.08412 2.56192 3.34226 3.40838 3.59675 3.71625 3.80153 3.85249 3.93901 4.17662 4.25509 4.42310 4.52140 4.55516 4.61118 4.65478 4.71824 4.73657 4.80148 4.83385 4.97559 5.03741 5.09057 5.14680 5.20518 5.21780 5.39276 5.47034 5.50696 5.90682 6.26951 6.34378 6.86964 7.32947 8.08876 8.30596 9.29134 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.003444 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.593850 B = 8127.158715 C = 8817.823168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.235 4.235 4 C 0.016 3.984 5 O -0.164 6.164 6 C -0.113 4.113 7 C 0.602 3.398 8 O -0.564 6.564 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.110 4.110 12 C -0.096 4.096 13 H 0.076 0.924 14 C 0.164 3.836 15 N -0.749 5.749 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.296 1.296 24 C 0.120 3.880 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.184 0.816 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.027 0.973 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.500 24.641 -5.507 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.253 4.253 4 C -0.053 4.053 5 O -0.059 6.059 6 C -0.165 4.165 7 C 0.392 3.608 8 O -0.446 6.446 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.095 0.905 14 C 0.038 3.962 15 N -0.392 5.392 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.223 1.223 24 C -0.002 4.002 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.201 0.799 29 H 0.276 0.724 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.170 24.175 -5.618 26.822 hybrid contribution -1.053 -1.004 0.331 1.493 sum 9.117 23.171 -5.287 25.455 Atomic orbital electron populations 1.20422 0.88423 1.03453 1.02929 1.21019 0.98102 0.91975 0.98798 1.22081 0.92278 1.00509 1.10477 1.25423 1.01383 0.79755 0.98727 1.84130 1.26915 1.24070 1.70811 1.21352 0.82895 0.93405 1.18815 1.16619 0.84595 0.82675 0.76874 1.90837 1.17061 1.83109 1.53620 1.48532 1.08411 1.06052 1.71350 1.22286 0.77197 0.98728 1.03418 1.22680 0.97340 0.91337 1.03447 1.22415 0.94466 0.94431 1.00292 0.90515 1.20763 0.92154 0.88177 0.95113 1.42654 1.38904 1.05653 1.51969 1.19705 1.12435 0.85804 1.19491 0.90174 1.25625 0.98725 1.02725 1.00099 1.69847 1.22852 1.36244 1.33368 0.85043 0.77263 0.80036 0.77236 1.18649 1.22017 1.22349 1.22171 0.98679 0.78729 1.00663 0.90788 0.88834 0.92272 0.79863 0.72434 0.89958 0.89404 0.87097 0.88863 0.95540 0.94417 0.79692 0.94110 0.91609 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 9.81 71.24 0.70 -1.49 16 2 C -0.10 -2.24 6.20 -19.74 -0.12 -2.36 16 3 C -0.23 -3.45 10.83 22.07 0.24 -3.21 16 4 C 0.02 0.19 12.08 67.10 0.81 1.00 16 5 O -0.16 -3.22 8.28 -5.05 -0.04 -3.27 16 6 C -0.11 -3.05 6.95 24.07 0.17 -2.88 16 7 C 0.60 20.56 7.82 86.44 0.68 21.24 16 8 O -0.56 -23.46 14.99 -4.36 -0.07 -23.52 16 9 N -0.61 -18.96 3.33 -816.56 -2.72 -21.67 16 10 C 0.11 2.27 5.54 86.73 0.48 2.75 16 11 C -0.11 -2.29 6.42 31.78 0.20 -2.08 16 12 C -0.10 -3.03 3.05 -9.41 -0.03 -3.05 16 13 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 14 C 0.16 6.31 5.72 86.38 0.49 6.81 16 15 N -0.75 -38.61 5.55 -343.46 -1.91 -40.51 16 16 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 19 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 20 Si 0.98 46.99 29.55 68.60 2.03 49.01 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 C 0.12 4.26 6.32 86.85 0.55 4.81 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.70 6.45 -2.39 -0.02 1.69 16 28 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.26 0.12 8.06 -2.91 -0.02 0.10 16 30 H 0.08 1.60 7.68 -2.38 -0.02 1.58 16 31 H 0.09 1.61 7.79 -2.39 -0.02 1.59 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.74 8.04 -2.38 -0.02 1.72 16 34 H 0.03 1.01 7.96 -2.39 -0.02 1.00 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.37 20.79 7.67 -92.70 -0.71 20.08 16 37 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.07 2.40 7.91 -2.39 -0.02 2.38 16 39 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 Total: -1.00 -76.83 326.80 3.40 -73.43 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.34 Total: 23.26 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.47 Total: 4.45 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -4.34 Total: -123.37 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.11 Total: -26.79 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -76.83 3.40 -73.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317313390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.067 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds