Wall clock time and date at job start Tue Mar 31 2020 01:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40366 * 126.64597 * 2 1 4 4 C 1.35122 * 107.11507 * 180.22269 * 3 2 1 5 5 O 1.33928 * 108.76949 * 359.77699 * 4 3 2 6 6 C 1.34915 * 109.38377 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98910 * 179.97438 * 6 5 4 8 8 O 1.21692 * 120.00071 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99951 * 0.02946 * 7 6 5 10 10 C 1.47019 * 125.64821 * 359.95452 * 9 7 6 11 11 C 1.54371 * 107.28817 * 181.12551 * 10 9 7 12 12 C 1.55153 * 102.92030 * 22.14324 * 11 10 9 13 13 H 1.09000 * 111.00975 * 82.63056 * 12 11 10 14 14 C 1.53001 * 111.00747 * 206.45314 * 12 11 10 15 15 N 1.46496 * 109.47205 * 181.81871 * 14 12 11 16 16 C 1.36945 * 119.99718 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47426 * 125.64843 * 179.97438 * 9 7 6 25 25 H 1.08999 * 109.47559 * 270.16117 * 1 2 3 26 26 H 1.09001 * 109.47360 * 30.16332 * 1 2 3 27 27 H 1.09002 * 109.47025 * 150.15704 * 1 2 3 28 28 H 1.08000 * 126.44125 * 0.02562 * 3 2 1 29 29 H 1.08002 * 125.61657 * 179.78027 * 4 3 2 30 30 H 1.08995 * 109.88108 * 300.51565 * 10 9 7 31 31 H 1.09006 * 109.88588 * 61.52509 * 10 9 7 32 32 H 1.08995 * 110.70569 * 263.79348 * 11 10 9 33 33 H 1.09005 * 110.75123 * 140.50310 * 11 10 9 34 34 H 1.08997 * 109.46922 * 61.80913 * 14 12 11 35 35 H 1.09000 * 109.46483 * 301.81732 * 14 12 11 36 36 H 0.96996 * 120.00499 * 359.97438 * 15 14 12 37 37 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.36643 * 36.99580 * 24 9 7 39 39 H 1.09003 * 110.46106 * 274.72402 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0050 5 8 3.6005 -0.6647 -0.0031 6 6 2.3220 -1.0955 0.0025 7 6 1.8842 -2.4952 0.0056 8 8 0.6968 -2.7614 0.0103 9 7 2.7971 -3.4868 0.0034 10 6 4.2564 -3.3080 -0.0030 11 6 4.8908 -4.7150 -0.0324 12 6 3.7528 -5.5967 -0.6107 13 1 3.7297 -5.5407 -1.6990 14 6 3.8901 -7.0467 -0.1419 15 7 2.8264 -7.8565 -0.7409 16 6 2.7470 -9.1953 -0.4644 17 1 3.4688 -9.6542 0.1950 18 6 1.7388 -9.9625 -1.0315 19 7 0.8595 -9.4034 -1.8356 20 14 1.6309 -11.7890 -0.6548 21 1 0.4745 -12.3761 -1.3781 22 1 2.8815 -12.4595 -1.0927 23 1 1.4506 -11.9832 0.8063 24 6 2.4977 -4.9303 0.0066 25 1 -0.3634 0.0029 1.0276 26 1 -0.3634 0.8885 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0306 2.1595 0.0004 29 1 4.5045 1.2917 -0.0097 30 1 4.5573 -2.7477 -0.8882 31 1 4.5687 -2.7763 0.8959 32 1 5.1564 -5.0390 0.9738 33 1 5.7624 -4.7321 -0.6869 34 1 3.8092 -7.0864 0.9444 35 1 4.8605 -7.4371 -0.4484 36 1 2.1784 -7.4444 -1.3335 37 1 0.1552 -9.9396 -2.2322 38 1 1.6191 -5.1369 -0.6046 39 1 2.3420 -5.2849 1.0255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317313396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:35 Heat of formation + Delta-G solvation = -8.534250 kcal Electronic energy + Delta-G solvation = -21368.849606 eV Core-core repulsion = 18085.435281 eV Total energy + Delta-G solvation = -3283.414325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.87349 -39.77422 -37.64761 -34.76471 -34.17459 -32.31609 -30.72894 -30.30263 -28.73248 -27.76179 -25.47763 -23.79624 -22.41738 -21.85588 -21.26125 -19.99303 -19.40524 -17.75254 -16.97741 -16.65379 -16.31528 -15.99623 -15.29537 -14.62316 -14.43668 -13.90594 -13.60053 -13.42379 -13.24556 -13.18833 -13.13510 -12.78293 -12.63959 -12.54495 -12.10733 -11.91090 -11.73169 -11.27437 -10.83683 -10.64698 -10.60028 -10.42068 -10.09995 -10.00199 -9.89293 -9.66167 -8.89455 -8.85795 -8.48992 -6.91389 -5.73809 -3.03475 0.94197 2.14738 2.53284 3.08496 3.15300 3.46231 3.50355 3.51774 4.35238 4.57879 4.58928 4.64240 4.69774 4.90620 5.01732 5.27847 5.33949 5.35439 5.45460 5.59327 5.61247 5.62232 5.68103 5.85573 5.88510 5.96848 5.99337 6.03874 6.09668 6.20930 6.29436 6.38626 6.41381 6.68882 6.74208 6.82884 7.49069 7.71170 8.07165 8.44373 9.55501 10.12302 10.46674 11.48762 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.003473 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.708590 B = 8059.497582 C = 8772.609330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.092 4.092 3 C -0.224 4.224 4 C -0.012 4.012 5 O -0.160 6.160 6 C -0.075 4.075 7 C 0.611 3.389 8 O -0.516 6.516 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.125 4.125 12 C -0.106 4.106 13 H 0.086 0.914 14 C 0.165 3.835 15 N -0.733 5.733 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.116 3.884 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 22.431 3.987 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.244 4.244 4 C -0.082 4.082 5 O -0.055 6.055 6 C -0.126 4.126 7 C 0.399 3.601 8 O -0.394 6.394 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.125 4.125 13 H 0.104 0.896 14 C 0.037 3.963 15 N -0.378 5.378 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.005 4.005 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.470 21.948 4.052 23.535 hybrid contribution -0.204 -0.521 -0.018 0.560 sum 7.266 21.426 4.034 22.982 Atomic orbital electron populations 1.20429 0.88198 1.03657 1.02899 1.20644 0.97726 0.90946 1.00185 1.21725 0.92484 1.00059 1.10094 1.24342 0.99881 0.80952 1.03035 1.84155 1.28394 1.22349 1.70589 1.21902 0.81381 0.94726 1.14632 1.16149 0.84976 0.81271 0.77682 1.90877 1.15185 1.82008 1.51371 1.48451 1.06806 1.07211 1.71724 1.22090 0.79596 0.98324 1.01874 1.22672 0.98247 0.92911 1.02471 1.22605 0.93125 0.95955 1.00824 0.89591 1.20585 0.92819 0.87004 0.95874 1.42364 1.32367 1.06317 1.56721 1.19165 1.09992 0.84856 1.23380 0.91204 1.24753 0.97996 0.98173 0.99952 1.69654 1.18024 1.35184 1.35146 0.86261 0.76971 0.85262 0.77631 1.21691 1.21291 1.21259 1.22408 0.99311 0.76780 1.01996 0.90835 0.91561 0.89339 0.82811 0.77506 0.91274 0.91314 0.90218 0.89846 0.95983 0.95735 0.78187 0.93409 0.89527 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.81 36.00 0.35 -0.73 16 2 C -0.09 -1.12 6.20 -104.44 -0.65 -1.77 16 3 C -0.22 -2.05 10.83 -39.89 -0.43 -2.48 16 4 C -0.01 -0.10 12.08 29.62 0.36 0.26 16 5 O -0.16 -1.80 8.27 5.00 0.04 -1.76 16 6 C -0.07 -1.02 6.95 -36.80 -0.26 -1.28 16 7 C 0.61 10.02 7.82 -12.86 -0.10 9.92 16 8 O -0.52 -9.93 14.99 5.20 0.08 -9.85 16 9 N -0.61 -9.30 3.33 -172.02 -0.57 -9.88 16 10 C 0.10 1.24 5.55 -3.04 -0.02 1.22 16 11 C -0.12 -1.46 6.42 -24.87 -0.16 -1.62 16 12 C -0.11 -1.67 3.07 -88.46 -0.27 -1.94 16 13 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 14 C 0.17 3.21 5.71 -4.04 -0.02 3.19 16 15 N -0.73 -18.52 5.50 -59.91 -0.33 -18.85 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.12 1.97 6.23 -2.52 -0.02 1.96 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.20 6.45 -51.93 -0.33 0.86 16 28 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 32 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.38 10.28 7.63 -40.82 -0.31 9.97 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.69 8.04 -51.93 -0.42 1.27 16 39 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -33.41 326.74 -7.23 -40.64 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.62 Total: 5.74 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.46 Total: -0.71 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.18 Total: -56.56 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.12 Total: -11.61 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.41 -7.23 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317313396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.106 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds