Wall clock time and date at job start Tue Mar 31 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40366 * 126.64597 * 2 1 4 4 C 1.35122 * 107.11507 * 180.22269 * 3 2 1 5 5 O 1.33928 * 108.76949 * 359.77699 * 4 3 2 6 6 C 1.34915 * 109.38377 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98910 * 179.97438 * 6 5 4 8 8 O 1.21692 * 120.00071 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99951 * 0.02946 * 7 6 5 10 10 C 1.47019 * 125.64821 * 359.95452 * 9 7 6 11 11 C 1.54371 * 107.28817 * 181.12551 * 10 9 7 12 12 C 1.55153 * 102.92030 * 22.14324 * 11 10 9 13 13 H 1.09000 * 111.00975 * 82.63056 * 12 11 10 14 14 C 1.53001 * 111.00747 * 206.45314 * 12 11 10 15 15 N 1.46496 * 109.47205 * 181.81871 * 14 12 11 16 16 C 1.36945 * 119.99718 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47426 * 125.64843 * 179.97438 * 9 7 6 25 25 H 1.08999 * 109.47559 * 270.16117 * 1 2 3 26 26 H 1.09001 * 109.47360 * 30.16332 * 1 2 3 27 27 H 1.09002 * 109.47025 * 150.15704 * 1 2 3 28 28 H 1.08000 * 126.44125 * 0.02562 * 3 2 1 29 29 H 1.08002 * 125.61657 * 179.78027 * 4 3 2 30 30 H 1.08995 * 109.88108 * 300.51565 * 10 9 7 31 31 H 1.09006 * 109.88588 * 61.52509 * 10 9 7 32 32 H 1.08995 * 110.70569 * 263.79348 * 11 10 9 33 33 H 1.09005 * 110.75123 * 140.50310 * 11 10 9 34 34 H 1.08997 * 109.46922 * 61.80913 * 14 12 11 35 35 H 1.09000 * 109.46483 * 301.81732 * 14 12 11 36 36 H 0.96996 * 120.00499 * 359.97438 * 15 14 12 37 37 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.36643 * 36.99580 * 24 9 7 39 39 H 1.09003 * 110.46106 * 274.72402 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0050 5 8 3.6005 -0.6647 -0.0031 6 6 2.3220 -1.0955 0.0025 7 6 1.8842 -2.4952 0.0056 8 8 0.6968 -2.7614 0.0103 9 7 2.7971 -3.4868 0.0034 10 6 4.2564 -3.3080 -0.0030 11 6 4.8908 -4.7150 -0.0324 12 6 3.7528 -5.5967 -0.6107 13 1 3.7297 -5.5407 -1.6990 14 6 3.8901 -7.0467 -0.1419 15 7 2.8264 -7.8565 -0.7409 16 6 2.7470 -9.1953 -0.4644 17 1 3.4688 -9.6542 0.1950 18 6 1.7388 -9.9625 -1.0315 19 7 0.8595 -9.4034 -1.8356 20 14 1.6309 -11.7890 -0.6548 21 1 0.4745 -12.3761 -1.3781 22 1 2.8815 -12.4595 -1.0927 23 1 1.4506 -11.9832 0.8063 24 6 2.4977 -4.9303 0.0066 25 1 -0.3634 0.0029 1.0276 26 1 -0.3634 0.8885 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0306 2.1595 0.0004 29 1 4.5045 1.2917 -0.0097 30 1 4.5573 -2.7477 -0.8882 31 1 4.5687 -2.7763 0.8959 32 1 5.1564 -5.0390 0.9738 33 1 5.7624 -4.7321 -0.6869 34 1 3.8092 -7.0864 0.9444 35 1 4.8605 -7.4371 -0.4484 36 1 2.1784 -7.4444 -1.3335 37 1 0.1552 -9.9396 -2.2322 38 1 1.6191 -5.1369 -0.6046 39 1 2.3420 -5.2849 1.0255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317313396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:34 Heat of formation + Delta-G solvation = -31.194912 kcal Electronic energy + Delta-G solvation = -21369.832246 eV Core-core repulsion = 18085.435281 eV Total energy + Delta-G solvation = -3284.396965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.40 seconds Orbital eigenvalues (eV) -43.68594 -40.98487 -38.93426 -36.49617 -35.10312 -33.97956 -32.22258 -31.29923 -30.03960 -28.82406 -27.04177 -25.33193 -23.76184 -22.94629 -22.16894 -21.33782 -20.40685 -19.22946 -18.56852 -17.68726 -17.31875 -17.12175 -16.59461 -16.28800 -15.70071 -15.32222 -15.13402 -14.74223 -14.60929 -14.14556 -14.10166 -13.95790 -13.84229 -13.57272 -13.42635 -13.11506 -12.98097 -12.79791 -12.70631 -12.30235 -12.14535 -11.89931 -11.65295 -11.62080 -11.28346 -10.92768 -10.67630 -9.95448 -9.50423 -9.00229 -7.94296 -5.24008 0.00713 1.41236 1.47180 1.50909 1.56842 1.56983 2.02341 2.08464 2.56543 3.34415 3.40688 3.59555 3.71350 3.80120 3.85719 3.93885 4.18133 4.25843 4.42326 4.52055 4.55432 4.61050 4.65209 4.71995 4.73577 4.79773 4.83881 4.97736 5.03988 5.09078 5.14778 5.20641 5.21440 5.39484 5.47050 5.50177 5.90689 6.27066 6.34538 6.87042 7.33138 8.09245 8.30960 9.29207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.003473 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.708590 B = 8059.497582 C = 8772.609330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.235 4.235 4 C 0.017 3.983 5 O -0.164 6.164 6 C -0.113 4.113 7 C 0.601 3.399 8 O -0.564 6.564 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.110 4.110 12 C -0.096 4.096 13 H 0.077 0.923 14 C 0.164 3.836 15 N -0.749 5.749 16 C -0.246 4.246 17 H 0.080 0.920 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.298 1.298 22 H -0.274 1.274 23 H -0.278 1.278 24 C 0.120 3.880 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.184 0.816 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.027 0.973 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.047 0.953 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.863 24.495 4.789 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.253 4.253 4 C -0.053 4.053 5 O -0.059 6.059 6 C -0.165 4.165 7 C 0.392 3.608 8 O -0.446 6.446 9 N -0.343 5.343 10 C -0.017 4.017 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.096 0.904 14 C 0.038 3.962 15 N -0.392 5.392 16 C -0.378 4.378 17 H 0.098 0.902 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.224 1.224 22 H -0.200 1.200 23 H -0.204 1.204 24 C -0.002 4.002 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.201 0.799 29 H 0.276 0.724 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.522 24.027 4.884 26.680 hybrid contribution -1.061 -0.998 -0.234 1.475 sum 9.461 23.029 4.650 25.327 Atomic orbital electron populations 1.20422 0.88433 1.03391 1.02990 1.21016 0.98098 0.91979 0.98795 1.22077 0.92277 1.00505 1.10480 1.25423 1.01384 0.79753 0.98720 1.84129 1.26907 1.24073 1.70812 1.21350 0.82899 0.93392 1.18825 1.16623 0.84593 0.82684 0.76878 1.90835 1.17078 1.83105 1.53605 1.48531 1.08420 1.06039 1.71355 1.22296 0.77189 0.98741 1.03432 1.22688 0.97284 0.91291 1.03493 1.22423 0.94476 0.94424 1.00273 0.90448 1.20761 0.91418 0.88356 0.95675 1.42631 1.33536 1.06184 1.56821 1.19641 1.09548 0.86196 1.22389 0.90194 1.25629 0.98151 1.02756 1.00545 1.69835 1.18913 1.36625 1.36910 0.85173 0.76895 0.79924 0.77539 1.22408 1.20028 1.20379 1.22156 0.98711 0.78719 1.00619 0.90585 0.88912 0.92401 0.79859 0.72421 0.89955 0.89425 0.88916 0.86991 0.95538 0.94460 0.79691 0.94091 0.93419 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 9.81 71.24 0.70 -1.50 16 2 C -0.10 -2.25 6.20 -19.74 -0.12 -2.37 16 3 C -0.23 -3.46 10.83 22.07 0.24 -3.23 16 4 C 0.02 0.19 12.08 67.10 0.81 1.00 16 5 O -0.16 -3.24 8.27 -5.02 -0.04 -3.28 16 6 C -0.11 -3.07 6.95 24.07 0.17 -2.90 16 7 C 0.60 20.69 7.82 86.44 0.68 21.36 16 8 O -0.56 -23.62 14.99 -4.32 -0.06 -23.69 16 9 N -0.61 -19.09 3.33 -816.37 -2.72 -21.80 16 10 C 0.10 2.28 5.55 86.75 0.48 2.76 16 11 C -0.11 -2.28 6.42 31.80 0.20 -2.08 16 12 C -0.10 -3.03 3.07 -9.40 -0.03 -3.06 16 13 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 14 C 0.16 6.33 5.71 86.38 0.49 6.82 16 15 N -0.75 -38.71 5.50 -343.47 -1.89 -40.59 16 16 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 19 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 20 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.12 4.32 6.23 86.86 0.54 4.86 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.70 6.45 -2.39 -0.02 1.68 16 28 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 29 H 0.26 0.13 8.06 -2.91 -0.02 0.10 16 30 H 0.08 1.60 7.68 -2.39 -0.02 1.58 16 31 H 0.09 1.62 7.78 -2.38 -0.02 1.60 16 32 H 0.09 1.74 8.04 -2.39 -0.02 1.72 16 33 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.03 1.02 8.03 -2.39 -0.02 1.00 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.37 20.84 7.63 -92.71 -0.71 20.14 16 37 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.05 2.05 8.04 -2.38 -0.02 2.03 16 39 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 Total: -1.00 -76.96 326.74 3.41 -73.54 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.35 Total: 23.65 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.47 Total: 4.41 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.32 Total: -123.67 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.11 Total: -26.96 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -76.96 3.41 -73.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317313396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.346 kcal (2) G-P(sol) polarization free energy of solvation -76.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.40 seconds