Wall clock time and date at job start Tue Mar 31 2020 00:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 125.61339 * 2 1 4 4 C 1.40365 * 107.11186 * 180.02562 * 3 2 1 5 5 C 1.36538 * 106.70923 * 359.97438 * 4 3 2 6 6 C 1.46660 * 125.98540 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00479 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99917 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00237 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47420 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.47420 * 180.02562 * 10 9 8 12 12 C 1.36932 * 120.00063 * 270.00679 * 11 10 9 13 13 H 1.07997 * 120.00322 * 144.92448 * 12 11 10 14 14 C 1.38816 * 119.99849 * 324.92029 * 12 11 10 15 15 N 1.31617 * 120.00068 * 337.94036 * 14 12 11 16 16 Si 1.86802 * 119.99869 * 157.94209 * 14 12 11 17 17 H 1.48495 * 109.47500 * 89.99997 * 16 14 12 18 18 H 1.48502 * 109.47011 * 210.00176 * 16 14 12 19 19 H 1.48501 * 109.47163 * 329.99776 * 16 14 12 20 20 C 1.46497 * 119.99890 * 89.99784 * 11 10 9 21 21 C 1.53003 * 117.50072 * 183.23806 * 20 11 10 22 22 C 1.53002 * 117.49504 * 114.58083 * 20 11 10 23 23 O 1.33931 * 125.61987 * 180.32093 * 2 1 3 24 24 H 1.09002 * 109.46981 * 90.00399 * 1 2 3 25 25 H 1.09000 * 109.46837 * 209.99914 * 1 2 3 26 26 H 1.08995 * 109.47258 * 330.00423 * 1 2 3 27 27 H 1.08005 * 126.44252 * 0.02697 * 3 2 1 28 28 H 1.08001 * 126.64530 * 179.97438 * 4 3 2 29 29 H 0.97005 * 119.99891 * 359.97438 * 8 6 5 30 30 H 1.09006 * 109.46726 * 59.99950 * 9 8 6 31 31 H 1.08998 * 109.47487 * 300.00238 * 9 8 6 32 32 H 1.08998 * 109.47186 * 300.00668 * 10 9 8 33 33 H 1.09000 * 109.46614 * 60.00267 * 10 9 8 34 34 H 0.96998 * 119.99831 * 176.06314 * 15 14 12 35 35 H 1.08998 * 115.55142 * 328.91667 * 20 11 10 36 36 H 1.09003 * 117.49418 * 0.02562 * 21 20 11 37 37 H 1.08996 * 117.49960 * 145.02608 * 21 20 11 38 38 H 1.09003 * 117.49754 * 214.98355 * 22 20 11 39 39 H 1.08999 * 117.50124 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7115 -0.0004 6 6 4.7415 -1.6100 -0.0013 7 8 5.8680 -1.1498 -0.0020 8 7 4.5591 -2.9453 -0.0004 9 6 5.7169 -3.8429 -0.0020 10 6 5.2364 -5.2954 0.0001 11 7 6.3942 -6.1929 -0.0008 12 6 6.9337 -6.6134 -1.1871 13 1 8.0001 -6.7602 -1.2735 14 6 6.1097 -6.8510 -2.2787 15 7 4.8305 -7.1009 -2.0956 16 14 6.8165 -6.8163 -4.0075 17 1 7.2835 -8.1761 -4.3788 18 1 5.7679 -6.3752 -4.9621 19 1 7.9597 -5.8698 -4.0559 20 6 6.9751 -6.6405 1.2675 21 6 8.2286 -7.5153 1.2008 22 6 6.8851 -8.1315 1.5985 23 8 2.2870 -1.0887 -0.0061 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.9612 2.1261 0.0004 28 1 4.5113 1.2704 -0.0011 29 1 3.6611 -3.3122 0.0012 30 1 6.3204 -3.6589 0.8870 31 1 6.3175 -3.6598 -0.8930 32 1 4.6361 -5.4782 0.8913 33 1 4.6327 -5.4796 -0.8886 34 1 4.2435 -7.2103 -2.8600 35 1 6.8967 -5.9356 2.0951 36 1 8.6213 -7.7574 0.2132 37 1 8.9748 -7.3861 1.9847 38 1 6.7479 -8.4075 2.6440 39 1 6.3933 -8.7794 0.8729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317547696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:24 Heat of formation + Delta-G solvation = 23.833503 kcal Electronic energy + Delta-G solvation = -21162.439116 eV Core-core repulsion = 17880.428362 eV Total energy + Delta-G solvation = -3282.010754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.72713 -39.10375 -37.12227 -34.87805 -33.49314 -33.09643 -32.09630 -30.83220 -28.34605 -26.71976 -24.44342 -22.55256 -21.66338 -21.50702 -21.20582 -20.11318 -19.76129 -18.17873 -16.51678 -16.28949 -15.69000 -15.40498 -15.38707 -14.76290 -14.52964 -13.91821 -13.88654 -13.43837 -13.24693 -13.05921 -13.02974 -12.73548 -12.61805 -12.09898 -11.94960 -11.60173 -11.06625 -10.76185 -10.73337 -10.36079 -10.19273 -10.08693 -10.03404 -9.83779 -9.66073 -9.31512 -8.77927 -8.53497 -8.41478 -6.66522 -5.87495 -3.47492 1.08299 2.26970 2.60235 3.31520 3.38548 3.40337 3.44737 3.49950 4.40752 4.50668 4.83618 4.86175 4.91408 5.13227 5.16881 5.26231 5.29262 5.40387 5.59326 5.74722 5.87488 5.88575 6.01275 6.06826 6.17623 6.25683 6.30179 6.47417 6.48528 6.58648 6.71313 6.85732 6.94890 7.03839 7.19782 7.50190 7.74552 7.80992 8.36405 8.40020 9.06112 9.69073 10.23799 11.09254 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.004164 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.263097 B = 6723.002834 C = 7293.374515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.225 4.225 4 C -0.126 4.126 5 C -0.070 4.070 6 C 0.594 3.406 7 O -0.527 6.527 8 N -0.706 5.706 9 C 0.097 3.903 10 C 0.136 3.864 11 N -0.547 5.547 12 C -0.260 4.260 13 H 0.069 0.931 14 C 0.012 3.988 15 N -0.884 5.884 16 Si 0.896 3.104 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.118 3.882 21 C -0.194 4.194 22 C -0.220 4.220 23 O -0.161 6.161 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.403 0.597 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 12.011 5.319 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 C -0.244 4.244 4 C -0.147 4.147 5 C -0.122 4.122 6 C 0.379 3.621 7 O -0.406 6.406 8 N -0.355 5.355 9 C -0.028 4.028 10 C 0.009 3.991 11 N -0.264 5.264 12 C -0.389 4.389 13 H 0.086 0.914 14 C -0.188 4.188 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.201 1.201 20 C 0.010 3.990 21 C -0.233 4.233 22 C -0.261 4.261 23 O -0.056 6.056 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.237 0.763 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.938 11.889 5.170 15.201 hybrid contribution -0.042 -0.009 -0.929 0.930 sum -7.980 11.879 4.241 14.926 Atomic orbital electron populations 1.20392 0.84706 1.04369 1.03908 1.22795 0.94281 0.84212 1.02801 1.21556 0.92419 0.99637 1.10752 1.21915 0.98508 0.93035 1.01229 1.22314 0.81856 0.94835 1.13188 1.16610 0.85824 0.81944 0.77715 1.90864 1.22004 1.76218 1.51550 1.46042 1.11745 1.05172 1.72591 1.22445 0.87016 0.91579 1.01721 1.21104 0.90549 0.84620 1.02869 1.43217 1.33843 1.49227 1.00068 1.19090 0.91479 1.40806 0.87561 0.91380 1.25125 0.95998 0.98468 0.99245 1.70027 1.04442 1.48186 1.29923 0.86411 0.78604 0.78095 0.84401 1.21130 1.21401 1.20126 1.21242 0.97943 0.89639 0.90221 1.23041 0.91042 1.07042 1.02151 1.23357 1.01318 1.01750 0.99631 1.84026 1.16096 1.34885 1.70642 0.89658 0.90115 0.89116 0.82858 0.82353 0.76298 0.92711 0.91152 0.94869 0.87583 0.93464 0.89438 0.88410 0.90665 0.91166 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.41 36.01 0.37 -0.13 16 2 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -2.44 10.77 -39.89 -0.43 -2.87 16 4 C -0.13 -1.70 10.62 -39.40 -0.42 -2.12 16 5 C -0.07 -1.08 7.13 -36.80 -0.26 -1.34 16 6 C 0.59 10.77 7.79 -12.86 -0.10 10.67 16 7 O -0.53 -11.11 16.86 5.20 0.09 -11.02 16 8 N -0.71 -12.47 5.55 -61.62 -0.34 -12.81 16 9 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 10 C 0.14 2.99 5.45 -4.04 -0.02 2.97 16 11 N -0.55 -13.14 2.78 -165.66 -0.46 -13.60 16 12 C -0.26 -6.84 8.63 -15.06 -0.13 -6.97 16 13 H 0.07 1.80 6.55 -52.49 -0.34 1.46 16 14 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 15 N -0.88 -24.30 11.33 55.49 0.63 -23.67 16 16 Si 0.90 21.21 29.61 -169.99 -5.03 16.18 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.12 2.50 6.56 -67.93 -0.45 2.05 16 21 C -0.19 -3.81 9.80 -26.69 -0.26 -4.07 16 22 C -0.22 -4.41 10.36 -26.69 -0.28 -4.69 16 23 O -0.16 -2.22 10.40 5.01 0.05 -2.17 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 28 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.40 6.34 8.23 -40.82 -0.34 6.00 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.11 2.62 5.36 -51.93 -0.28 2.35 16 34 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -30.39 335.93 -7.84 -38.23 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.49 Total: 8.25 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.34 Total: -4.45 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.17 Total: -50.08 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.14 Total: -13.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.39 -7.84 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317547696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.062 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds