Wall clock time and date at job start Tue Mar 31 2020 00:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 125.61339 * 2 1 4 4 C 1.40365 * 107.11186 * 180.02562 * 3 2 1 5 5 C 1.36538 * 106.70923 * 359.97438 * 4 3 2 6 6 C 1.46660 * 125.98540 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00479 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99917 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00237 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47420 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.47420 * 180.02562 * 10 9 8 12 12 C 1.36932 * 120.00063 * 270.00679 * 11 10 9 13 13 H 1.07997 * 120.00322 * 144.92448 * 12 11 10 14 14 C 1.38816 * 119.99849 * 324.92029 * 12 11 10 15 15 N 1.31617 * 120.00068 * 337.94036 * 14 12 11 16 16 Si 1.86802 * 119.99869 * 157.94209 * 14 12 11 17 17 H 1.48495 * 109.47500 * 89.99997 * 16 14 12 18 18 H 1.48502 * 109.47011 * 210.00176 * 16 14 12 19 19 H 1.48501 * 109.47163 * 329.99776 * 16 14 12 20 20 C 1.46497 * 119.99890 * 89.99784 * 11 10 9 21 21 C 1.53003 * 117.50072 * 183.23806 * 20 11 10 22 22 C 1.53002 * 117.49504 * 114.58083 * 20 11 10 23 23 O 1.33931 * 125.61987 * 180.32093 * 2 1 3 24 24 H 1.09002 * 109.46981 * 90.00399 * 1 2 3 25 25 H 1.09000 * 109.46837 * 209.99914 * 1 2 3 26 26 H 1.08995 * 109.47258 * 330.00423 * 1 2 3 27 27 H 1.08005 * 126.44252 * 0.02697 * 3 2 1 28 28 H 1.08001 * 126.64530 * 179.97438 * 4 3 2 29 29 H 0.97005 * 119.99891 * 359.97438 * 8 6 5 30 30 H 1.09006 * 109.46726 * 59.99950 * 9 8 6 31 31 H 1.08998 * 109.47487 * 300.00238 * 9 8 6 32 32 H 1.08998 * 109.47186 * 300.00668 * 10 9 8 33 33 H 1.09000 * 109.46614 * 60.00267 * 10 9 8 34 34 H 0.96998 * 119.99831 * 176.06314 * 15 14 12 35 35 H 1.08998 * 115.55142 * 328.91667 * 20 11 10 36 36 H 1.09003 * 117.49418 * 0.02562 * 21 20 11 37 37 H 1.08996 * 117.49960 * 145.02608 * 21 20 11 38 38 H 1.09003 * 117.49754 * 214.98355 * 22 20 11 39 39 H 1.08999 * 117.50124 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7115 -0.0004 6 6 4.7415 -1.6100 -0.0013 7 8 5.8680 -1.1498 -0.0020 8 7 4.5591 -2.9453 -0.0004 9 6 5.7169 -3.8429 -0.0020 10 6 5.2364 -5.2954 0.0001 11 7 6.3942 -6.1929 -0.0008 12 6 6.9337 -6.6134 -1.1871 13 1 8.0001 -6.7602 -1.2735 14 6 6.1097 -6.8510 -2.2787 15 7 4.8305 -7.1009 -2.0956 16 14 6.8165 -6.8163 -4.0075 17 1 7.2835 -8.1761 -4.3788 18 1 5.7679 -6.3752 -4.9621 19 1 7.9597 -5.8698 -4.0559 20 6 6.9751 -6.6405 1.2675 21 6 8.2286 -7.5153 1.2008 22 6 6.8851 -8.1315 1.5985 23 8 2.2870 -1.0887 -0.0061 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.9612 2.1261 0.0004 28 1 4.5113 1.2704 -0.0011 29 1 3.6611 -3.3122 0.0012 30 1 6.3204 -3.6589 0.8870 31 1 6.3175 -3.6598 -0.8930 32 1 4.6361 -5.4782 0.8913 33 1 4.6327 -5.4796 -0.8886 34 1 4.2435 -7.2103 -2.8600 35 1 6.8967 -5.9356 2.0951 36 1 8.6213 -7.7574 0.2132 37 1 8.9748 -7.3861 1.9847 38 1 6.7479 -8.4075 2.6440 39 1 6.3933 -8.7794 0.8729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317547696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:23 Heat of formation + Delta-G solvation = 5.067160 kcal Electronic energy + Delta-G solvation = -21163.252886 eV Core-core repulsion = 17880.428362 eV Total energy + Delta-G solvation = -3282.824524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.72015 -40.57129 -38.85157 -36.45463 -35.08182 -34.24435 -33.06953 -32.58749 -29.85806 -27.92568 -26.24963 -23.94624 -23.05962 -22.76306 -22.61258 -21.60102 -21.22448 -19.49468 -18.14119 -17.58441 -17.32983 -17.11599 -16.46823 -16.27060 -16.21249 -15.63850 -15.20603 -14.53391 -14.46971 -14.12256 -14.03435 -13.96719 -13.79032 -13.70146 -13.31304 -12.95494 -12.77671 -12.62076 -12.53737 -12.16947 -11.95191 -11.72816 -11.50252 -11.39475 -11.06083 -10.93085 -10.51940 -10.25521 -9.47298 -8.60033 -7.86713 -5.50348 -0.02406 1.33984 1.41049 1.45568 1.54334 1.57259 2.06875 2.14510 2.48116 3.11969 3.38572 3.49330 3.64830 3.89364 3.95197 4.28367 4.31849 4.35272 4.49863 4.53842 4.57565 4.59679 4.72102 4.73974 4.74854 4.93929 4.94504 5.01966 5.13560 5.13971 5.24300 5.37924 5.46823 5.53932 5.63040 5.71988 5.85829 6.38187 6.44514 6.96294 7.09612 7.77898 8.27376 9.05797 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.004164 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.263097 B = 6723.002834 C = 7293.374515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.228 4.228 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.595 3.405 7 O -0.567 6.567 8 N -0.702 5.702 9 C 0.119 3.881 10 C 0.143 3.857 11 N -0.565 5.565 12 C -0.265 4.265 13 H 0.061 0.939 14 C -0.031 4.031 15 N -0.908 5.908 16 Si 0.948 3.052 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.097 3.903 21 C -0.183 4.183 22 C -0.211 4.211 23 O -0.174 6.174 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.189 0.811 28 H 0.163 0.837 29 H 0.412 0.588 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.253 0.747 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 13.404 6.276 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.246 4.246 4 C -0.139 4.139 5 C -0.162 4.162 6 C 0.383 3.617 7 O -0.448 6.448 8 N -0.352 5.352 9 C -0.007 4.007 10 C 0.017 3.983 11 N -0.282 5.282 12 C -0.395 4.395 13 H 0.079 0.921 14 C -0.229 4.229 15 N -0.552 5.552 16 Si 0.776 3.224 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.011 4.011 21 C -0.221 4.221 22 C -0.252 4.252 23 O -0.070 6.070 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.206 0.794 28 H 0.180 0.820 29 H 0.248 0.752 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.186 13.274 6.142 17.271 hybrid contribution 0.249 -0.373 -1.167 1.250 sum -8.937 12.900 4.975 16.463 Atomic orbital electron populations 1.20680 0.81311 1.06071 1.05345 1.23808 0.96039 0.83462 0.99723 1.21950 0.90854 1.01371 1.10431 1.22229 1.00173 0.92348 0.99118 1.21760 0.81966 0.94829 1.17662 1.16902 0.86395 0.81928 0.76519 1.90823 1.23792 1.76828 1.53399 1.45876 1.11421 1.05113 1.72761 1.21961 0.87410 0.91107 1.00190 1.20945 0.90032 0.85208 1.02162 1.43406 1.34229 1.49961 1.00601 1.19229 0.91321 1.40037 0.88889 0.92113 1.25689 0.96363 0.98951 1.01847 1.70121 1.05202 1.49547 1.30329 0.85594 0.77780 0.77888 0.81110 1.20863 1.21526 1.20202 1.21554 0.99101 0.90692 0.89773 1.23055 0.91307 1.05578 1.02133 1.23262 1.01276 1.00099 1.00551 1.84010 1.15599 1.36293 1.71133 0.88138 0.89611 0.86218 0.79376 0.81975 0.75195 0.92633 0.94225 0.93548 0.90099 0.93773 0.87062 0.90661 0.87111 0.87833 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.41 71.24 0.74 0.01 16 2 C 0.02 0.43 7.31 24.97 0.18 0.61 16 3 C -0.23 -4.29 10.77 22.07 0.24 -4.05 16 4 C -0.12 -3.05 10.62 22.39 0.24 -2.81 16 5 C -0.11 -3.41 7.13 24.07 0.17 -3.24 16 6 C 0.59 22.15 7.79 86.44 0.67 22.82 16 7 O -0.57 -24.66 16.86 -4.32 -0.07 -24.73 16 8 N -0.70 -25.46 5.55 -467.10 -2.59 -28.06 16 9 C 0.12 4.97 6.00 86.38 0.52 5.49 16 10 C 0.14 6.45 5.45 86.38 0.47 6.92 16 11 N -0.56 -27.46 2.78 -678.04 -1.88 -29.34 16 12 C -0.26 -14.22 8.63 84.04 0.73 -13.49 16 13 H 0.06 3.29 6.55 -2.91 -0.02 3.27 16 14 C -0.03 -1.67 4.96 84.86 0.42 -1.25 16 15 N -0.91 -51.14 11.33 21.65 0.25 -50.89 16 16 Si 0.95 44.50 29.61 68.60 2.03 46.53 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 C 0.10 3.99 6.56 44.99 0.30 4.28 16 21 C -0.18 -6.90 9.80 30.62 0.30 -6.60 16 22 C -0.21 -8.23 10.36 30.62 0.32 -7.92 16 23 O -0.17 -4.65 10.40 -5.00 -0.05 -4.70 16 24 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.41 13.27 8.23 -92.70 -0.76 12.50 16 30 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 33 H 0.08 4.13 5.36 -2.39 -0.01 4.12 16 34 H 0.25 13.79 8.32 -92.71 -0.77 13.02 16 35 H 0.11 4.03 8.14 -2.39 -0.02 4.02 16 36 H 0.07 3.20 6.37 -2.39 -0.02 3.18 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -67.57 335.93 3.27 -64.30 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.30 Total: 26.11 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.29 Total: 0.78 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.23 Total: -108.29 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.12 Total: -29.43 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.57 3.27 -64.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317547696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.372 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds