Wall clock time and date at job start Tue Mar 31 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41385 * 126.58036 * 2 1 4 4 C 1.34509 * 106.83821 * 179.97438 * 3 2 1 5 5 O 1.34309 * 108.42424 * 359.73471 * 4 3 2 6 6 C 1.34299 * 109.47446 * 0.44184 * 5 4 3 7 7 C 1.50701 * 125.79179 * 179.82414 * 6 5 4 8 8 C 1.50694 * 109.46984 * 269.69113 * 7 6 5 9 9 O 1.21283 * 120.00206 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99738 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00047 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47259 * 179.97438 * 11 10 8 13 13 C 1.53493 * 114.20766 * 184.99977 * 12 11 10 14 14 N 1.47058 * 87.98843 * 220.15387 * 13 12 11 15 15 C 1.36939 * 136.05576 * 206.86742 * 14 13 12 16 16 H 1.07999 * 120.00262 * 6.89608 * 15 14 13 17 17 C 1.38820 * 119.99870 * 186.90334 * 15 14 13 18 18 N 1.31623 * 119.99962 * 7.45800 * 17 15 14 19 19 Si 1.86800 * 119.99890 * 187.46108 * 17 15 14 20 20 H 1.48508 * 109.46943 * 94.79809 * 19 17 15 21 21 H 1.48498 * 109.46995 * 214.79830 * 19 17 15 22 22 H 1.48493 * 109.47191 * 334.80093 * 19 17 15 23 23 C 1.47065 * 87.88764 * 27.11926 * 14 13 12 24 24 H 1.09004 * 109.46770 * 270.03789 * 1 2 3 25 25 H 1.08999 * 109.47104 * 30.03824 * 1 2 3 26 26 H 1.09000 * 109.46818 * 150.03911 * 1 2 3 27 27 H 1.07991 * 126.57978 * 359.97438 * 3 2 1 28 28 H 1.08008 * 125.78692 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47132 * 149.68789 * 7 6 5 30 30 H 1.09007 * 109.46720 * 29.68920 * 7 6 5 31 31 H 0.97003 * 120.00864 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.46749 * 60.00815 * 11 10 8 33 33 H 1.08996 * 109.47078 * 300.00616 * 11 10 8 34 34 H 1.08997 * 113.28437 * 318.07176 * 12 11 10 35 35 H 1.09000 * 113.46649 * 105.36540 * 13 12 11 36 36 H 1.09005 * 113.52085 * 334.94325 * 13 12 11 37 37 H 0.96998 * 119.99720 * 180.02562 * 18 17 15 38 38 H 1.09003 * 113.46183 * 87.65927 * 23 14 13 39 39 H 1.08992 * 113.47023 * 218.10216 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6617 0.0068 6 6 2.3087 -1.0803 0.0005 7 6 1.8522 -2.5165 0.0007 8 6 1.7006 -2.9955 -1.4200 9 8 1.9402 -2.2448 -2.3420 10 7 1.2998 -4.2585 -1.6661 11 6 1.1519 -4.7241 -3.0473 12 6 0.6897 -6.1827 -3.0471 13 6 0.6155 -6.8196 -4.4417 14 7 -0.6296 -7.4775 -4.0182 15 6 -1.3046 -8.6205 -4.3546 16 1 -0.8561 -9.3333 -5.0307 17 6 -2.5655 -8.8628 -3.8268 18 7 -3.1741 -7.9321 -3.1226 19 14 -3.3983 -10.5097 -4.1158 20 1 -3.1280 -11.4096 -2.9658 21 1 -4.8630 -10.3066 -4.2519 22 1 -2.8658 -11.1222 -5.3593 23 6 -0.8341 -6.3646 -3.0788 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5144 26 1 -0.3633 -0.8903 -0.5132 27 1 2.0368 2.1690 -0.0004 28 1 4.5061 1.2923 0.0011 29 1 0.8937 -2.5930 0.5142 30 1 2.5902 -3.1322 0.5150 31 1 1.1085 -4.8591 -0.9288 32 1 2.1101 -4.6471 -3.5612 33 1 0.4135 -4.1086 -3.5611 34 1 1.1975 -6.7955 -2.3024 35 1 1.4281 -7.5173 -4.6440 36 1 0.4726 -6.0953 -5.2437 37 1 -4.0550 -8.1016 -2.7535 38 1 -1.3633 -5.5184 -3.5171 39 1 -1.2541 -6.6755 -2.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318155078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:26 Heat of formation + Delta-G solvation = 29.299820 kcal Electronic energy + Delta-G solvation = -20845.960435 eV Core-core repulsion = 17564.186718 eV Total energy + Delta-G solvation = -3281.773717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.67691 -39.59378 -38.16255 -34.49312 -34.30512 -32.42050 -32.06322 -29.42507 -28.50890 -26.54209 -25.36696 -24.61780 -22.17304 -21.56933 -20.76878 -19.78019 -19.04188 -17.26634 -17.07421 -16.71569 -15.85053 -15.76970 -15.59788 -14.90859 -14.39252 -14.23846 -13.71528 -13.59150 -13.27399 -13.20583 -13.00221 -12.84407 -12.57546 -12.38444 -12.06902 -11.57638 -11.45652 -11.27485 -11.10836 -10.81561 -10.59436 -10.08032 -9.84083 -9.79524 -9.67369 -9.27831 -8.85656 -8.79676 -8.42112 -6.92056 -5.82330 -3.13099 1.61565 2.47909 2.67097 2.86684 3.36821 3.40874 3.42717 3.44255 4.42737 4.44456 4.77880 4.80945 4.86397 5.02475 5.16500 5.18806 5.24472 5.34876 5.37146 5.54355 5.65234 5.69079 5.76268 5.81847 5.95206 6.01381 6.10461 6.21605 6.36214 6.47648 6.50020 6.63582 6.71565 7.06611 7.12398 7.30070 7.47634 7.60007 7.93112 8.29243 8.99956 9.66309 10.60965 11.36487 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039778 B = 0.002900 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.744250 B = 9652.302040 C =10053.488931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.166 4.166 3 C -0.210 4.210 4 C -0.039 4.039 5 O -0.172 6.172 6 C 0.006 3.994 7 C -0.063 4.063 8 C 0.510 3.490 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.134 3.866 12 C -0.160 4.160 13 C 0.127 3.873 14 N -0.610 5.610 15 C -0.220 4.220 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.169 3.831 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.146 0.854 28 H 0.201 0.799 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.403 0.597 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.254 0.746 38 H 0.030 0.970 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.131 14.625 9.865 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.167 4.167 3 C -0.230 4.230 4 C -0.107 4.107 5 O -0.068 6.068 6 C -0.044 4.044 7 C -0.102 4.102 8 C 0.295 3.705 9 O -0.411 6.411 10 N -0.373 5.373 11 C 0.010 3.990 12 C -0.180 4.180 13 C 0.000 4.000 14 N -0.336 5.336 15 C -0.347 4.347 16 H 0.100 0.900 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.043 3.957 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.218 0.782 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.237 0.763 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.246 14.702 9.160 20.652 hybrid contribution -0.757 -0.810 0.080 1.111 sum 10.489 13.892 9.240 19.707 Atomic orbital electron populations 1.20193 0.89227 1.02952 1.01771 1.20179 0.97104 0.92004 1.07417 1.21671 0.92657 0.99706 1.08932 1.23912 0.99671 0.80583 1.06547 1.83974 1.28684 1.22795 1.71368 1.21267 0.81136 0.95035 1.07010 1.20109 1.04205 0.89659 0.96277 1.20326 0.77358 0.82102 0.90695 1.90736 1.49591 1.54688 1.46061 1.46023 1.68558 1.12729 1.09959 1.21363 1.01013 0.94966 0.81615 1.23607 1.00992 0.92980 1.00417 1.22319 0.90735 0.93968 0.93004 1.45663 1.23513 1.20831 1.43567 1.18966 0.97501 0.93517 1.24737 0.90044 1.24842 0.96326 0.98302 1.00992 1.69858 1.14916 1.32153 1.39637 0.86082 0.78720 0.83036 0.77814 1.21520 1.21684 1.20536 1.22025 0.88890 0.89670 0.95105 0.91493 0.91474 0.91581 0.83621 0.78231 0.85903 0.87093 0.76298 0.91842 0.91295 0.88858 0.94004 0.94816 0.93624 0.95202 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.99 36.01 0.36 -0.49 16 2 C -0.17 -1.99 6.16 -104.74 -0.65 -2.64 16 3 C -0.21 -2.27 10.87 -39.70 -0.43 -2.70 16 4 C -0.04 -0.41 12.09 29.41 0.36 -0.05 16 5 O -0.17 -2.20 10.65 5.70 0.06 -2.14 16 6 C 0.01 0.07 5.81 -35.62 -0.21 -0.13 16 7 C -0.06 -0.63 5.85 -29.04 -0.17 -0.80 16 8 C 0.51 6.98 7.82 -10.99 -0.09 6.89 16 9 O -0.53 -9.68 16.03 5.56 0.09 -9.60 16 10 N -0.72 -9.18 5.56 -60.29 -0.33 -9.52 16 11 C 0.13 2.04 5.59 -4.04 -0.02 2.01 16 12 C -0.16 -2.77 4.09 -90.10 -0.37 -3.13 16 13 C 0.13 2.54 8.26 -8.52 -0.07 2.47 16 14 N -0.61 -15.56 3.76 -184.78 -0.70 -16.25 16 15 C -0.22 -6.16 10.73 -15.06 -0.16 -6.32 16 16 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.12 11.86 55.49 0.66 -26.47 16 19 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.17 3.81 6.79 -8.51 -0.06 3.75 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16 27 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.12 0.92 7.76 -51.93 -0.40 0.52 16 30 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.15 7.82 -51.93 -0.41 0.75 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.03 0.71 7.89 -51.93 -0.41 0.30 16 39 H 0.06 1.42 7.63 -51.93 -0.40 1.02 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -35.23 334.88 -7.52 -42.74 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.71 Total: 0.69 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.60 Total: -1.45 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.37 Total: -52.23 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.15 Total: -11.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.23 -7.52 -42.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318155078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds