Wall clock time and date at job start Tue Mar 31 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41385 * 126.58036 * 2 1 4 4 C 1.34509 * 106.83821 * 179.97438 * 3 2 1 5 5 O 1.34309 * 108.42424 * 359.73471 * 4 3 2 6 6 C 1.34299 * 109.47446 * 0.44184 * 5 4 3 7 7 C 1.50701 * 125.79179 * 179.82414 * 6 5 4 8 8 C 1.50694 * 109.46984 * 269.69113 * 7 6 5 9 9 O 1.21283 * 120.00206 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99738 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00047 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47259 * 179.97438 * 11 10 8 13 13 C 1.53493 * 114.20766 * 184.99977 * 12 11 10 14 14 N 1.47058 * 87.98843 * 220.15387 * 13 12 11 15 15 C 1.36939 * 136.05576 * 206.86742 * 14 13 12 16 16 H 1.07999 * 120.00262 * 6.89608 * 15 14 13 17 17 C 1.38820 * 119.99870 * 186.90334 * 15 14 13 18 18 N 1.31623 * 119.99962 * 7.45800 * 17 15 14 19 19 Si 1.86800 * 119.99890 * 187.46108 * 17 15 14 20 20 H 1.48508 * 109.46943 * 94.79809 * 19 17 15 21 21 H 1.48498 * 109.46995 * 214.79830 * 19 17 15 22 22 H 1.48493 * 109.47191 * 334.80093 * 19 17 15 23 23 C 1.47065 * 87.88764 * 27.11926 * 14 13 12 24 24 H 1.09004 * 109.46770 * 270.03789 * 1 2 3 25 25 H 1.08999 * 109.47104 * 30.03824 * 1 2 3 26 26 H 1.09000 * 109.46818 * 150.03911 * 1 2 3 27 27 H 1.07991 * 126.57978 * 359.97438 * 3 2 1 28 28 H 1.08008 * 125.78692 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47132 * 149.68789 * 7 6 5 30 30 H 1.09007 * 109.46720 * 29.68920 * 7 6 5 31 31 H 0.97003 * 120.00864 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.46749 * 60.00815 * 11 10 8 33 33 H 1.08996 * 109.47078 * 300.00616 * 11 10 8 34 34 H 1.08997 * 113.28437 * 318.07176 * 12 11 10 35 35 H 1.09000 * 113.46649 * 105.36540 * 13 12 11 36 36 H 1.09005 * 113.52085 * 334.94325 * 13 12 11 37 37 H 0.96998 * 119.99720 * 180.02562 * 18 17 15 38 38 H 1.09003 * 113.46183 * 87.65927 * 23 14 13 39 39 H 1.08992 * 113.47023 * 218.10216 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6617 0.0068 6 6 2.3087 -1.0803 0.0005 7 6 1.8522 -2.5165 0.0007 8 6 1.7006 -2.9955 -1.4200 9 8 1.9402 -2.2448 -2.3420 10 7 1.2998 -4.2585 -1.6661 11 6 1.1519 -4.7241 -3.0473 12 6 0.6897 -6.1827 -3.0471 13 6 0.6155 -6.8196 -4.4417 14 7 -0.6296 -7.4775 -4.0182 15 6 -1.3046 -8.6205 -4.3546 16 1 -0.8561 -9.3333 -5.0307 17 6 -2.5655 -8.8628 -3.8268 18 7 -3.1741 -7.9321 -3.1226 19 14 -3.3983 -10.5097 -4.1158 20 1 -3.1280 -11.4096 -2.9658 21 1 -4.8630 -10.3066 -4.2519 22 1 -2.8658 -11.1222 -5.3593 23 6 -0.8341 -6.3646 -3.0788 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5144 26 1 -0.3633 -0.8903 -0.5132 27 1 2.0368 2.1690 -0.0004 28 1 4.5061 1.2923 0.0011 29 1 0.8937 -2.5930 0.5142 30 1 2.5902 -3.1322 0.5150 31 1 1.1085 -4.8591 -0.9288 32 1 2.1101 -4.6471 -3.5612 33 1 0.4135 -4.1086 -3.5611 34 1 1.1975 -6.7955 -2.3024 35 1 1.4281 -7.5173 -4.6440 36 1 0.4726 -6.0953 -5.2437 37 1 -4.0550 -8.1016 -2.7535 38 1 -1.3633 -5.5184 -3.5171 39 1 -1.2541 -6.6755 -2.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318155078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:26 Heat of formation + Delta-G solvation = 5.107416 kcal Electronic energy + Delta-G solvation = -20847.009496 eV Core-core repulsion = 17564.186718 eV Total energy + Delta-G solvation = -3282.822778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.49713 -40.81208 -39.76363 -35.76828 -35.18270 -34.23440 -33.09094 -30.76958 -29.67580 -27.86849 -26.61378 -26.34308 -23.86854 -22.41647 -21.84937 -20.96996 -20.31898 -18.74833 -18.23338 -17.96073 -17.01868 -16.96570 -16.72278 -16.52527 -15.82678 -15.35216 -15.32511 -14.71971 -14.53240 -14.31487 -14.00609 -13.92933 -13.60818 -13.38747 -13.32789 -13.04248 -12.97122 -12.85683 -12.66142 -12.32170 -12.22115 -11.84554 -11.69313 -11.13657 -10.94335 -10.84338 -10.48509 -10.04596 -9.24951 -8.94561 -7.94474 -5.26419 0.77683 1.46223 1.47939 1.56993 1.62713 1.66284 2.06729 2.40163 2.47752 3.29290 3.43050 3.63669 3.68550 3.97634 4.01122 4.08887 4.13143 4.31755 4.35800 4.48069 4.59114 4.65340 4.78875 4.81121 4.86262 4.86633 4.91409 4.99227 5.08879 5.17445 5.20781 5.34775 5.41596 5.51539 5.63899 5.69616 5.90405 6.24613 6.58071 6.89437 7.25840 7.57868 8.59588 9.24584 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039778 B = 0.002900 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.744250 B = 9652.302040 C =10053.488931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.184 4.184 3 C -0.229 4.229 4 C -0.040 4.040 5 O -0.191 6.191 6 C -0.021 4.021 7 C -0.055 4.055 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.712 5.712 11 C 0.145 3.855 12 C -0.116 4.116 13 C 0.122 3.878 14 N -0.644 5.644 15 C -0.233 4.233 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.953 5.953 19 Si 0.981 3.019 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.167 3.833 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.165 0.835 28 H 0.237 0.763 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.249 0.751 38 H 0.011 0.989 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.384 14.515 10.701 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.185 4.185 3 C -0.248 4.248 4 C -0.107 4.107 5 O -0.088 6.088 6 C -0.071 4.071 7 C -0.094 4.094 8 C 0.298 3.702 9 O -0.463 6.463 10 N -0.364 5.364 11 C 0.021 3.979 12 C -0.136 4.136 13 C -0.004 4.004 14 N -0.370 5.370 15 C -0.361 4.361 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.809 3.191 20 H -0.210 1.210 21 H -0.222 1.222 22 H -0.192 1.192 23 C 0.041 3.959 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.182 0.818 28 H 0.253 0.747 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.527 14.579 10.011 21.672 hybrid contribution -1.101 -0.691 -0.215 1.317 sum 11.426 13.889 9.795 20.479 Atomic orbital electron populations 1.20223 0.88352 1.02595 1.02863 1.20602 0.98094 0.92645 1.07155 1.22030 0.92894 1.00487 1.09355 1.24701 1.01013 0.80031 1.04939 1.83962 1.29062 1.24005 1.71750 1.21679 0.81218 0.96134 1.08046 1.20194 1.06398 0.88984 0.93868 1.20930 0.75956 0.81489 0.91788 1.90715 1.51766 1.55915 1.47877 1.45888 1.68104 1.13019 1.09408 1.21068 1.00774 0.92987 0.83097 1.23228 0.96769 0.94485 0.99112 1.22508 0.89045 0.94172 0.94624 1.46072 1.25051 1.21032 1.44836 1.19372 0.97858 0.94706 1.24175 0.89682 1.25698 0.97183 1.01791 1.01345 1.70031 1.15007 1.34056 1.41027 0.85022 0.77036 0.78917 0.78118 1.21035 1.22219 1.19221 1.21989 0.92337 0.88312 0.93276 0.89626 0.91220 0.92528 0.81776 0.74721 0.83305 0.84251 0.74543 0.90885 0.93087 0.86936 0.92258 0.94289 0.94179 0.97144 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 9.99 71.24 0.71 -0.90 16 2 C -0.18 -4.25 6.16 -19.94 -0.12 -4.37 16 3 C -0.23 -4.64 10.87 22.19 0.24 -4.40 16 4 C -0.04 -0.76 12.09 66.97 0.81 0.05 16 5 O -0.19 -4.67 10.65 -2.51 -0.03 -4.70 16 6 C -0.02 -0.50 5.81 24.83 0.14 -0.35 16 7 C -0.06 -1.00 5.85 29.10 0.17 -0.83 16 8 C 0.51 13.32 7.82 87.66 0.69 14.01 16 9 O -0.58 -20.96 16.03 -3.04 -0.05 -21.01 16 10 N -0.71 -16.88 5.56 -463.05 -2.57 -19.45 16 11 C 0.15 4.22 5.59 86.38 0.48 4.70 16 12 C -0.12 -3.85 4.09 -10.46 -0.04 -3.90 16 13 C 0.12 4.76 8.26 83.18 0.69 5.45 16 14 N -0.64 -32.84 3.76 -738.51 -2.78 -35.62 16 15 C -0.23 -13.07 10.73 84.04 0.90 -12.17 16 16 H 0.09 4.55 7.84 -2.91 -0.02 4.53 16 17 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 18 N -0.95 -57.35 11.86 21.65 0.26 -57.09 16 19 Si 0.98 45.35 29.56 68.60 2.03 47.38 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.17 7.60 6.79 83.18 0.56 8.17 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.17 7.78 -2.39 -0.02 1.15 16 27 H 0.16 2.51 8.06 -2.92 -0.02 2.49 16 28 H 0.24 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.15 1.87 7.76 -2.38 -0.02 1.85 16 30 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.42 7.49 8.47 -92.71 -0.79 6.71 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.70 7.82 -2.39 -0.02 1.68 16 34 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.50 8.11 -2.38 -0.02 1.48 16 37 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.01 0.53 7.89 -2.39 -0.02 0.51 16 39 H 0.03 1.67 7.63 -2.39 -0.02 1.65 16 Total: -1.00 -77.57 334.88 2.82 -74.75 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.27 Total: 13.63 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.70 Total: 2.11 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -5.10 Total: -112.16 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.08 Total: -25.71 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.57 2.82 -74.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318155078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.856 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds