Wall clock time and date at job start Tue Mar 31 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40371 * 126.65082 * 2 1 4 4 C 1.35129 * 107.11420 * 180.30275 * 3 2 1 5 5 O 1.33928 * 108.76915 * 359.74692 * 4 3 2 6 6 C 1.34909 * 109.38702 * 0.02562 * 5 4 3 7 7 C 1.46660 * 125.99133 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00180 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99870 * 0.02562 * 7 6 5 10 10 C 1.47433 * 125.64840 * 5.20664 * 9 7 6 11 11 C 1.54907 * 104.83278 * 155.88997 * 10 9 7 12 12 C 1.55165 * 101.58175 * 37.00634 * 11 10 9 13 13 C 1.47022 * 125.65069 * 185.22312 * 9 7 6 14 14 H 1.08995 * 110.01324 * 300.53417 * 13 9 7 15 15 C 1.53009 * 109.87748 * 61.62630 * 13 9 7 16 16 N 1.46503 * 109.46705 * 183.44786 * 15 13 9 17 17 C 1.36934 * 119.99528 * 175.01629 * 16 15 13 18 18 H 1.07996 * 120.00729 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00048 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47318 * 179.97438 * 21 19 17 23 23 H 1.48492 * 109.47296 * 300.00151 * 21 19 17 24 24 H 1.48500 * 109.47149 * 60.00226 * 21 19 17 25 25 H 1.09002 * 109.46744 * 270.12972 * 1 2 3 26 26 H 1.08995 * 109.46763 * 30.12195 * 1 2 3 27 27 H 1.08998 * 109.47248 * 150.12554 * 1 2 3 28 28 H 1.07998 * 126.43949 * 0.05100 * 3 2 1 29 29 H 1.07997 * 125.61644 * 179.78250 * 4 3 2 30 30 H 1.08995 * 110.36629 * 37.04692 * 10 9 7 31 31 H 1.09002 * 110.45248 * 274.77576 * 10 9 7 32 32 H 1.09003 * 111.00302 * 278.93438 * 11 10 9 33 33 H 1.08997 * 111.00663 * 155.07883 * 11 10 9 34 34 H 1.08995 * 110.71601 * 206.13644 * 12 11 10 35 35 H 1.09005 * 110.71683 * 82.86038 * 12 11 10 36 36 H 1.08989 * 109.47064 * 63.44635 * 15 13 9 37 37 H 1.09000 * 109.47000 * 303.44216 * 15 13 9 38 38 H 0.97004 * 120.00046 * 355.01037 * 16 15 13 39 39 H 0.96997 * 119.99941 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6743 -0.0068 5 8 3.6005 -0.6649 -0.0054 6 6 2.3220 -1.0956 0.0018 7 6 1.8842 -2.4953 0.0061 8 8 0.6967 -2.7614 0.0121 9 7 2.7969 -3.4869 0.0033 10 6 4.2572 -3.3109 0.1049 11 6 4.7802 -4.6547 0.6707 12 6 3.8481 -5.6741 -0.0360 13 6 2.5015 -4.9233 -0.1018 14 1 1.8629 -5.2342 0.7250 15 6 1.8073 -5.2155 -1.4337 16 7 1.4434 -6.6333 -1.4938 17 6 0.7173 -7.1094 -2.5527 18 1 0.4126 -6.4398 -3.3433 19 6 0.3730 -8.4530 -2.6100 20 7 0.7438 -9.2691 -1.6462 21 14 -0.6181 -9.1024 -4.0541 22 1 -0.8524 -10.5584 -3.8789 23 1 -1.9220 -8.3948 -4.1178 24 1 0.1330 -8.8706 -5.3140 25 1 -0.3633 0.0023 1.0277 26 1 -0.3633 0.8889 -0.5157 27 1 -0.3633 -0.8911 -0.5119 28 1 2.0308 2.1595 0.0008 29 1 4.5047 1.2914 -0.0120 30 1 4.4943 -2.4942 0.7867 31 1 4.6872 -3.1202 -0.8784 32 1 4.6568 -4.6975 1.7529 33 1 5.8210 -4.8178 0.3909 34 1 3.7534 -6.5846 0.5556 35 1 4.2130 -5.9001 -1.0380 36 1 2.4831 -4.9787 -2.2552 37 1 0.9076 -4.6057 -1.5159 38 1 1.7168 -7.2348 -0.7835 39 1 0.5035 -10.2080 -1.6865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319048912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:05 Heat of formation + Delta-G solvation = -4.454936 kcal Electronic energy + Delta-G solvation = -21837.987096 eV Core-core repulsion = 18554.749663 eV Total energy + Delta-G solvation = -3283.237433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.81315 -39.82958 -37.43618 -34.51737 -34.15743 -31.86671 -31.29895 -30.34716 -28.70679 -27.57753 -25.07446 -23.85515 -22.33754 -21.88602 -21.48645 -20.06937 -19.15826 -17.64912 -16.88679 -16.70317 -16.26767 -16.00384 -15.05469 -14.44232 -14.09198 -13.99560 -13.65805 -13.27985 -13.24471 -13.12479 -13.09646 -12.69867 -12.64743 -12.49029 -12.20430 -11.83414 -11.54606 -11.08785 -10.87885 -10.78804 -10.53100 -10.39273 -10.03711 -9.95123 -9.81805 -9.64983 -8.81459 -8.79380 -8.38711 -6.86701 -5.70981 -2.99226 1.01808 2.21322 2.58825 3.12823 3.25950 3.49309 3.52948 3.54815 4.41829 4.63385 4.65621 4.68335 4.69709 4.98308 5.05941 5.34324 5.40812 5.42814 5.45586 5.60732 5.64151 5.68794 5.71770 5.82702 5.92244 5.97181 6.05975 6.08062 6.09039 6.18963 6.34241 6.44253 6.53884 6.77443 6.86961 6.98007 7.59916 7.76365 8.19130 8.47980 9.59003 10.14968 10.51090 11.52052 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.004338 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.152848 B = 6452.517261 C = 7322.777741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.092 4.092 3 C -0.224 4.224 4 C -0.015 4.015 5 O -0.160 6.160 6 C -0.073 4.073 7 C 0.611 3.389 8 O -0.507 6.507 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.134 4.134 12 C -0.121 4.121 13 C 0.131 3.869 14 H 0.081 0.919 15 C 0.146 3.854 16 N -0.727 5.727 17 C -0.235 4.235 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.016 0.984 37 H 0.036 0.964 38 H 0.384 0.616 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.045 20.072 6.400 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.243 4.243 4 C -0.085 4.085 5 O -0.056 6.056 6 C -0.124 4.124 7 C 0.399 3.601 8 O -0.384 6.384 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.172 4.172 12 C -0.159 4.159 13 C 0.028 3.972 14 H 0.099 0.901 15 C 0.018 3.982 16 N -0.372 5.372 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.224 0.776 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.217 0.783 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.495 19.742 6.248 22.780 hybrid contribution -0.374 -0.233 -0.594 0.740 sum 9.121 19.510 5.654 22.266 Atomic orbital electron populations 1.20431 0.88197 1.03723 1.02853 1.20640 0.97722 0.90918 1.00242 1.21720 0.92497 1.00034 1.10055 1.24327 0.99841 0.81037 1.03252 1.84163 1.28450 1.22293 1.70660 1.21957 0.81318 0.94771 1.14400 1.16156 0.85052 0.81157 0.77713 1.90898 1.15138 1.81801 1.50569 1.48387 1.06897 1.06791 1.71579 1.22385 0.79955 0.98546 1.01239 1.22810 0.99794 0.94060 1.00518 1.22691 0.93133 0.97856 1.02249 1.21882 0.97265 0.77844 1.00186 0.90137 1.20942 0.96815 0.88167 0.92276 1.42186 1.65478 1.02907 1.26638 1.19177 1.25745 0.92452 0.99289 0.91301 1.24713 1.01583 0.96167 0.98475 1.69647 1.51313 1.04090 1.33360 0.86249 0.80120 0.77702 0.82028 1.21683 1.21251 1.21321 0.90884 0.91611 0.89233 0.82868 0.77584 0.90367 0.91206 0.90767 0.89847 0.89574 0.89774 0.96642 0.94601 0.78265 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.81 36.01 0.35 -0.81 16 2 C -0.09 -1.19 6.20 -104.43 -0.65 -1.84 16 3 C -0.22 -2.17 10.83 -39.89 -0.43 -2.61 16 4 C -0.01 -0.13 12.08 29.63 0.36 0.23 16 5 O -0.16 -1.88 8.01 5.02 0.04 -1.84 16 6 C -0.07 -1.05 6.92 -36.79 -0.25 -1.30 16 7 C 0.61 10.58 7.55 -12.86 -0.10 10.48 16 8 O -0.51 -10.34 13.93 5.19 0.07 -10.27 16 9 N -0.60 -9.69 3.06 -164.55 -0.50 -10.19 16 10 C 0.10 1.24 5.99 -2.53 -0.02 1.22 16 11 C -0.13 -1.49 7.09 -24.58 -0.17 -1.67 16 12 C -0.12 -1.81 6.01 -24.89 -0.15 -1.96 16 13 C 0.13 2.36 2.94 -66.95 -0.20 2.16 16 14 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.15 3.27 5.64 -4.04 -0.02 3.25 16 16 N -0.73 -19.26 5.44 -59.91 -0.33 -19.59 16 17 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 21 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.32 6.45 -51.93 -0.34 0.98 16 28 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.08 0.85 6.56 -51.93 -0.34 0.51 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.34 7.79 -51.93 -0.40 0.93 16 36 H 0.02 0.35 8.06 -51.94 -0.42 -0.06 16 37 H 0.04 0.89 6.93 -51.93 -0.36 0.53 16 38 H 0.38 10.38 7.40 -40.82 -0.30 10.08 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -34.12 323.35 -7.18 -41.30 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.51 Total: 6.05 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.52 Total: -0.38 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.11 Total: -57.78 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.11 Total: -12.12 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.12 -7.18 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319048912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.849 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds